Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

5066525 .. 5068677

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGTTTTATAACTCGATTTTTAGTTTTCATGTCACTCTTCACCAGTTTGGTTTCTGGATTTGCTCTACAAAAGCTTCCTCTTATACAGTTCGACGAAGGTTACACACAGCTCTTTGGTGACCAGAATCTTATTGTTCACAGAGATGGAAAATCTGTCCGGTTAACGCTTGATGAAAGAACCGGTTCTGGATTTGTCTCAAATGATATTTACTTGCATGGCTTCTTCAGTTCCTCTATCAAATTGCCAGCAGATTACTCTGCAGGAGTTGTTATCGCCTTTTATTTATCAAATGGGGACTTATATGAGAAGAATCATGACGAGATTGATTTTGAGTTTTTGGGGAATATTAGAGGCAGAGAATGGAGGATTCAGACCAATATATACGGTAATGGAAGCACACACTTGGGCAGAGAAGAAAGATACAATCTTTGGTTTGATCCAACAGAGGATTTCCATCAATACAGTATCCTTTGGTCTCTATCTCACATCATATTTTATGTAGACAATGTTCCGATCAGAGAAGTCAAACGTACGGCGTCGATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATATTCAACCATATGGGATGGTTCCAAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCTTACGTCTCTCAATTCACTGATCTGATCCTCCACGGCTGCGCCGTTGACCCCACCGAGAAGTTTCCGAGCTGCAAAGATGAAGCGGTTCAGAATCTCCGGCTAGCATCGGAGATAACGGAGTCTCAGAGGAACAAGATGGAGATTTTCCGACAGAAACACATGACTTATTCGTATTGTTACGATCATATGAGGTACAAGGTGGTTTTGTCGGAGTGTGTTGTGAATCCGGCTGAGGCTAAGCGTCTCAGGGTCTATGATCCGGTCACGTTCGGTGGGATTCCTCACGGCCACCGTCGTGGGAAGCATCGGAGCAGGAGCCGATTAGCTCGAACTGAGTCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

332

Amino Acids

38.25

Weight (kDa)

7.72

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	33 - 215	6.9e-58	Glycosyl hydrolases family 16
XET_C	PF06955	254 - 290	3.7e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	2 cut(s)	549, 737
AclWI	GGATC	3 cut(s)	434, 673, 905
AcoI	YGGCCR	1 cut(s)	940
AcuI	CTGAAG	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	3 cut(s)	535, 629, 848
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	585
AleI	CACNNNNGTG	1 cut(s)	948
AluBI	AGCT	4 cut(s)	76, 112, 723, 980
AluI	AGCT	4 cut(s)	76, 112, 723, 980
Alw26I	GTCTC	5 cut(s)	202, 483, 664, 780, 902
AlwI	GGATC	3 cut(s)	434, 673, 905
AoxI	GGCC	1 cut(s)	940
ApeKI	GCWGC	2 cut(s)	690, 723
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AsiGI	ACCGGT	1 cut(s)	182
Asp700I	GAANNNNTTC	2 cut(s)	184, 738
AspLEI	GCGC	1 cut(s)	695
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	3 cut(s)	34, 131, 563
AsuNHI	GCTAGC	1 cut(s)	754
BbvCI	CCTCAGC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	677, 710
BccI	CCATC	6 cut(s)	140, 465, 538, 590, 611, 784
BceAI	ACGGC	4 cut(s)	552, 680, 703, 955
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	5 cut(s)	202, 483, 664, 780, 902
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	2 cut(s)	691, 724
BlpI	GCTNAGC	1 cut(s)	891
BlsI	GCNGC	2 cut(s)	692, 725
Bme1390I	CCNGG	1 cut(s)	560
BmiI	GGNNCC	2 cut(s)	601, 971
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	767, 967
BmtI	GCTAGC	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	891
BpuMI	CCSGG	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	685
BsaWI	WCCGGW	3 cut(s)	159, 182, 913
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	1 cut(s)	601
BseJI	GATNNNNATC	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	791, 876, 913, 978
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	677, 710
BshFI	GGCC	1 cut(s)	942
BshTI	ACCGGT	1 cut(s)	182
BsiSI	CCGG	6 cut(s)	160, 183, 560, 751, 881, 914
BsiWI	CGTACG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	311
BsmAI	GTCTC	5 cut(s)	202, 483, 664, 780, 902
BsmBI	CGTCTC	2 cut(s)	664, 902
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	942
Bso31I	GGTCTC	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
Bsp1720I	GCTNAGC	1 cut(s)	891
BspACI	CCGC	2 cut(s)	549, 737
BspANI	GGCC	1 cut(s)	942
BspCNI	CTCAG	4 cut(s)	790, 877, 912, 979
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	601, 971
BspMAI	CTGCAG	1 cut(s)	265
BspOI	GCTAGC	1 cut(s)	758
BspPI	GGATC	3 cut(s)	434, 673, 905
BspTNI	GGTCTC	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
BssNI	GRCGYC	1 cut(s)	539
Bst4CI	ACNGT	5 cut(s)	90, 389, 467, 632, 947
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	249, 756
BstDEI	CTNAG	5 cut(s)	777, 885, 891, 899, 987
BstDSI	CCRYGG	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	6 cut(s)	442, 519, 676, 681, 838, 913
BstMAI	GTCTC	5 cut(s)	202, 483, 664, 780, 902
BstMBI	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	677, 710
BstXI	CCANNNNNNTGG	1 cut(s)	950
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	249, 756
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	182
CseI	GACGC	2 cut(s)	528, 884
Csp6I	GTAC	3 cut(s)	534, 628, 847
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	4 cut(s)	31, 218, 317, 814
CviQI	GTAC	3 cut(s)	534, 628, 847
DdeI	CTNAG	5 cut(s)	777, 885, 891, 899, 987
DpnI	GATC	6 cut(s)	441, 518, 675, 680, 837, 912
DpnII	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
Esp3I	CGTCTC	2 cut(s)	664, 902
FaeI	CATG	4 cut(s)	34, 221, 320, 817
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	4 cut(s)	30, 217, 316, 813
FauNDI	CATATG	2 cut(s)	590, 840
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	691, 724
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	691, 724
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	2 cut(s)	691, 724
HaeIII	GGCC	1 cut(s)	942
HapII	CCGG	6 cut(s)	160, 183, 560, 751, 881, 914
HgaI	GACGC	2 cut(s)	528, 884
HhaI	GCGC	1 cut(s)	695
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	4 cut(s)	34, 221, 320, 817
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HincII	GTYRAC	2 cut(s)	165, 700
HindII	GTYRAC	2 cut(s)	165, 700
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	8 cut(s)	127, 313, 370, 745, 773, 877, 931, 989
HpaI	GTTAAC	1 cut(s)	165
HpaII	CCGG	6 cut(s)	160, 183, 560, 751, 881, 914
HphI	GGTGA	3 cut(s)	34, 131, 563
Hpy166II	GTNNAC	4 cut(s)	139, 165, 505, 700
Hpy188III	TCNNGA	3 cut(s)	57, 189, 317
Hpy8I	GTNNAC	4 cut(s)	139, 165, 505, 700
Hpy99I	CGWCG	3 cut(s)	98, 544, 951
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	5 cut(s)	90, 389, 467, 632, 947
HpyCH4IV	ACGT	3 cut(s)	532, 657, 920
HpyCH4V	TGCA	3 cut(s)	217, 263, 726
HpyF3I	CTNAG	5 cut(s)	777, 885, 891, 899, 987
HpySE526I	ACGT	3 cut(s)	532, 657, 920
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	4 cut(s)	34, 221, 320, 817
HspAI	GCGC	1 cut(s)	693
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
LmnI	GCTCC	2 cut(s)	963, 969
Lsp1109I	GCAGC	2 cut(s)	677, 710
LweI	GCATC	2 cut(s)	767, 967
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	3 cut(s)	532, 657, 920
MaeIII	GTNAC	6 cut(s)	33, 101, 119, 551, 830, 916
MalI	GATC	6 cut(s)	441, 518, 675, 680, 837, 912
MboI	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
MboII	GAAGA	4 cut(s)	31, 217, 322, 428
MluCI	AATT	3 cut(s)	242, 637, 665
MlyI	GAGTC	2 cut(s)	782, 998
MmeI	TCCRAC	3 cut(s)	467, 826, 843
MroXI	GAANNNNTTC	2 cut(s)	184, 738
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	2 cut(s)	144, 948
MspI	CCGG	6 cut(s)	160, 183, 560, 751, 881, 914
MspR9I	CCNGG	1 cut(s)	560
NciI	CCSGG	1 cut(s)	560
NdeI	CATATG	2 cut(s)	590, 840
NdeII	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
NheI	GCTAGC	1 cut(s)	754
NlaIII	CATG	4 cut(s)	34, 221, 320, 817
NlaIV	GGNNCC	2 cut(s)	601, 971
NmuCI	GTSAC	4 cut(s)	33, 119, 551, 916
OliI	CACNNNNGTG	1 cut(s)	948
PagI	TCATGA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PdmI	GAANNNNTTC	2 cut(s)	184, 738
PfeI	GAWTC	6 cut(s)	127, 313, 370, 745, 877, 931
Pfl23II	CGTACG	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	692, 725
PleI	GAGTC	2 cut(s)	781, 997
PpsI	GAGTC	2 cut(s)	781, 997
PsiI	TTATAA	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	119
PspLI	CGTACG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	601, 971
PsrI	GAACNNNNNNTAC	2 cut(s)	495, 527
PstI	CTGCAG	1 cut(s)	265
RsaI	GTAC	3 cut(s)	535, 629, 848
RsaNI	GTAC	3 cut(s)	534, 628, 847
RseI	CAYNNNNRTG	2 cut(s)	144, 948
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	691, 724
Sau3AI	GATC	6 cut(s)	439, 516, 673, 678, 835, 910
SchI	GAGTC	2 cut(s)	782, 998
ScrFI	CCNGG	1 cut(s)	560
SfaNI	GCATC	2 cut(s)	767, 967
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	144, 948
Sse9I	AATT	3 cut(s)	242, 637, 665
SsiI	CCGC	2 cut(s)	549, 737
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	755
StyD4I	CCNGG	1 cut(s)	558
TaaI	ACNGT	5 cut(s)	90, 389, 467, 632, 947
TaiI	ACGT	3 cut(s)	535, 660, 923
TaqI	TCGA	5 cut(s)	16, 93, 542, 982, 992
TasI	AATT	3 cut(s)	242, 637, 665
TfiI	GAWTC	6 cut(s)	127, 313, 370, 745, 877, 931
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	4 cut(s)	33, 119, 551, 916
TseI	GCWGC	2 cut(s)	690, 723
Tsp45I	GTSAC	4 cut(s)	33, 119, 551, 916
TspDTI	ATGAA	3 cut(s)	19, 189, 747
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	676
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	2 cut(s)	184, 738
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.