Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

832647 .. 834890

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGGTTTTTTCATCTGGGATTGTTTCTGTGTGCCTGTCAAGTGCTTGTTCTTGGAGTTGTTGCTTCTGCACCCTCCGGAAAGCTACCAATCATACCCTTTGATGAAGGGTACACCAAGCTTTTTGGTGAAGACAATTTGATGATTCTTAGAGATGGGAAATCCGTCCATCTCTCGCTAAACGAACGGACAGGGTCTGGATTTGTTTCTCAGGACCTCTACCAGCATGGGTTTTTCAGTGCTTCCATTAAGCTGCCTGCTGATTATACTGCTGGAGTTGTTGTGGCGTTTTATATGTCGAACGGCGACATGTTTCCGAAGTACCATGATGAAATTGATTTTGAGTTCTTGGGGAACATACGGGGCAGAGAATGGAGGGTTCAGACCAATATTTACGGCAACGGAAGCACCAACACCGGCAGGGAAGAGAGATACAATCTATGGTTTGATCGATCCGACGATTACCATCAGTACAGCATTCTCTGGACTGACTCTCAGATCATCTTTTATGTTGACAATGTTCCCATTAGAGAGTTCAAGAAAACAGAATCAATGGGTGGTGACTTCCCGGCTAAGCCAATGTCATTGTATGCCACGATATGGGATGGATCTGATTGGGCTACCAACGGGGGCAAATACCGAGTGAATTACAAGTATGCTCCCTATTTGGCTGAGTTCTCTGACCTTGTTCTACACGGCTGTGCAGTCGATCCAATTGAACAATTATCAAAGAAATGCGAAAACACCCAAAGTTCAGAATCGGTCCCTACTGGCGTTACCCGCCTCCAAAGAATGAAGATGGAGAGTTTCAGGAAGAAGCACATGACATACTCCTACTGCTATGATAGAATCCGTTACAAGTCCTCTCCTTCAGAGTGTGTGATCAATCCCCAAGAAGCTGAAAGACTGCGTGTGTTTGACCCTGTCACATTCGGGAAAGGGAGGCGCCACCATGGAAAGCATCACCACCGGAGCAGAGTAAACCAGGCAGATGAGGCAACTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

337

Amino Acids

38.48

Weight (kDa)

6.86

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	945
AccB7I	CCANNNNNTGG	1 cut(s)	600
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	1 cut(s)	781
AclWI	GGATC	3 cut(s)	447, 616, 704
AcuI	CTGAAG	1 cut(s)	855
AcyI	GRCGYC	1 cut(s)	946
AfaI	GTAC	3 cut(s)	113, 323, 473
AfiI	CCNNNNNNNGG	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	538, 719
AjnI	CCWGG	1 cut(s)	984
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	4 cut(s)	85, 121, 253, 899
AluI	AGCT	4 cut(s)	85, 121, 253, 899
AlwI	GGATC	3 cut(s)	447, 616, 704
AlwNI	CAGNNNCTG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	2 cut(s)	214, 763
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	140, 572, 956
AvaII	GGWCC	2 cut(s)	214, 763
BanI	GGYRCC	1 cut(s)	945
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	5 cut(s)	149, 177, 474, 599, 793
BceAI	ACGGC	3 cut(s)	319, 412, 712
BciT130I	CCWGG	1 cut(s)	986
BclI	TGATCA	1 cut(s)	882
BcnI	CCSGG	1 cut(s)	569
BfoI	RGCGCY	1 cut(s)	949
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	569, 986
Bme18I	GGWCC	2 cut(s)	214, 763
BmgT120I	GGNCC	2 cut(s)	214, 763
BmiI	GGNNCC	2 cut(s)	765, 947
BmrFI	CCNGG	2 cut(s)	569, 986
BmsI	GCATC	1 cut(s)	970
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	573
BpuMI	CCSGG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	946
BsaJI	CCNNGG	1 cut(s)	952
BsaWI	WCCGGW	2 cut(s)	77, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	775
Bse8I	GATNNNNATC	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	986
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	224, 509, 663
BseNI	ACTGG	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	240
BsgI	GTGCAG	2 cut(s)	54, 723
BshNI	GGYRCC	1 cut(s)	945
BshVI	ATCGAT	1 cut(s)	451
BsiSI	CCGG	4 cut(s)	78, 417, 569, 970
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	477
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	952
BspACI	CCGC	1 cut(s)	781
BspCNI	CTCAG	3 cut(s)	223, 508, 664
BspDI	ATCGAT	1 cut(s)	451
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	765, 947
BspPI	GGATC	3 cut(s)	447, 616, 704
BspT107I	GGYRCC	1 cut(s)	945
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	775
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
BssNI	GRCGYC	1 cut(s)	946
BssT1I	CCWWGG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	986
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	946
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	5 cut(s)	149, 210, 495, 573, 672
BstDSI	CCRYGG	1 cut(s)	952
BstF5I	GGATG	1 cut(s)	610
BstH2I	RGCGCY	1 cut(s)	949
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	6 cut(s)	451, 455, 501, 611, 712, 885
BstMBI	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 780, 995
BstNI	CCWGG	1 cut(s)	986
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	2 cut(s)	567, 984
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
Bsu15I	ATCGAT	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	948
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	214, 763
ClaI	ATCGAT	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	112, 322, 472
CviAII	CATG	5 cut(s)	227, 310, 326, 823, 953
CviJI	RGCY	9 cut(s)	85, 121, 253, 572, 577, 620, 671, 699, 899
CviKI_1	RGCY	9 cut(s)	85, 121, 253, 572, 577, 620, 671, 699, 899
CviQI	GTAC	3 cut(s)	112, 322, 472
DdeI	CTNAG	5 cut(s)	149, 210, 495, 573, 672
DinI	GGCGCC	1 cut(s)	947
DpnI	GATC	6 cut(s)	450, 454, 500, 610, 711, 884
DpnII	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	952
Eco47I	GGWCC	2 cut(s)	214, 763
Eco57I	CTGAAG	1 cut(s)	855
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	984
EcoT14I	CCWWGG	1 cut(s)	952
EgeI	GGCGCC	1 cut(s)	947
EheI	GGCGCC	1 cut(s)	947
ErhI	CCWWGG	1 cut(s)	952
FaeI	CATG	5 cut(s)	230, 313, 329, 826, 956
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	5 cut(s)	226, 309, 325, 822, 952
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	254
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	949
HapII	CCGG	4 cut(s)	78, 417, 569, 970
HhaI	GCGC	1 cut(s)	948
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	230, 313, 329, 826, 956
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	5 cut(s)	145, 491, 548, 758, 849
HpaII	CCGG	4 cut(s)	78, 417, 569, 970
HphI	GGTGA	3 cut(s)	140, 572, 956
Hpy166II	GTNNAC	3 cut(s)	114, 514, 982
Hpy188I	TCNGA	8 cut(s)	318, 384, 457, 498, 613, 682, 757, 874
Hpy188III	TCNNGA	7 cut(s)	78, 198, 212, 484, 538, 811, 934
Hpy8I	GTNNAC	3 cut(s)	114, 514, 982
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	101, 879
HpyCH4V	TGCA	2 cut(s)	71, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 780, 995
HpyF3I	CTNAG	5 cut(s)	149, 210, 495, 573, 672
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	5 cut(s)	230, 313, 329, 826, 956
HspAI	GCGC	1 cut(s)	946
KasI	GGCGCC	1 cut(s)	945
Kpn2I	TCCGGA	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
LmnI	GCTCC	2 cut(s)	664, 972
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	970
MaeIII	GTNAC	4 cut(s)	560, 775, 854, 925
MalI	GATC	6 cut(s)	450, 454, 500, 610, 711, 884
MboI	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
MboII	GAAGA	4 cut(s)	143, 437, 808, 826
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	608
MluCI	AATT	5 cut(s)	136, 333, 646, 714, 722
Mly113I	GGCGCC	1 cut(s)	946
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	85, 227, 369, 794, 874, 936, 988
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	4 cut(s)	78, 417, 569, 970
MspR9I	CCNGG	2 cut(s)	569, 986
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	986
MwoI	GCNNNNNNNGC	3 cut(s)	405, 780, 995
NarI	GGCGCC	1 cut(s)	946
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	952
NdeII	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
NlaIII	CATG	5 cut(s)	230, 313, 329, 826, 956
NlaIV	GGNNCC	2 cut(s)	765, 947
NmuCI	GTSAC	2 cut(s)	560, 925
NspI	RCATGY	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	699
PciI	ACATGT	1 cut(s)	309
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	145, 548, 758, 849
PflFI	GACNNNGTC	2 cut(s)	193, 923
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	485
PluTI	GGCGCC	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	984
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	2 cut(s)	765, 947
PspPI	GGNCC	2 cut(s)	214, 763
PspPPI	RGGWCCY	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	2 cut(s)	193, 923
RsaI	GTAC	3 cut(s)	113, 323, 473
RsaNI	GTAC	3 cut(s)	112, 322, 472
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	6 cut(s)	448, 452, 498, 608, 709, 882
Sau96I	GGNCC	2 cut(s)	214, 763
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	569, 986
SetI	ASST	6 cut(s)	87, 123, 219, 255, 687, 901
SfaNI	GCATC	1 cut(s)	970
SfoI	GGCGCC	1 cut(s)	947
SinI	GGWCC	2 cut(s)	214, 763
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	5 cut(s)	136, 333, 646, 714, 722
SsiI	CCGC	1 cut(s)	781
SspDI	GGCGCC	1 cut(s)	945
SspI	AATATT	1 cut(s)	391
StyD4I	CCNGG	2 cut(s)	567, 984
StyI	CCWWGG	1 cut(s)	952
TaqI	TCGA	3 cut(s)	299, 451, 708
TaqII	GACCGA	1 cut(s)	751
TasI	AATT	5 cut(s)	136, 333, 646, 714, 722
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	4 cut(s)	145, 548, 758, 849
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	560, 925
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	2 cut(s)	560, 925
TspDTI	ATGAA	3 cut(s)	120, 345, 809
TspGWI	ACGGA	4 cut(s)	154, 202, 417, 842
TspRI	CASTG	1 cut(s)	244
Tth111I	GACNNNGTC	2 cut(s)	193, 923
Van91I	CCANNNNNTGG	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	214, 763
XceI	RCATGY	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.