Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

62416442 .. 62418939

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010057

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCGAATGCTGACATGTTCCCCAAGAACCATGACGAAATCGATTTCGAGTTTCTGGGTAATATAAGAGGCAAAGAATGGAGGGTTCAGACCAACGTTTATGGCAATGGAAGCACTGATACTGGGAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGAGGATTACCACCAGTACAGTATTCTCTGGACTGACTCTCATATCATAGTGGTTAAGAAATCGGAGGCGATGGGTGGTGACTATCCCTCGAAGCCAATGTCATTGTATGCTACAATATGGGATGGATCCGATTGGGCTACCAATGGAGGCAAATACAGAGTCAACTACAAGTATGCTCCATTCAAGGCCGAGTTCTCTGACCTTGCTCTACATGGCTGTGCAGTTGATCCAATTGAACAGGTATCAAAGAAATGTGATAAAACCCAAGGTTCTGAATATATCCCTACCGGTGTTACGCGCCTACAAAGAATGAGGATGGAGAGTTTCAGGAAGAGGCAGATGACATACTCATATTGCTACGACAGAATACGATACAAGGTTGCTCCACCAGAGTGTGTGATCAATCCCCAAGAAGCTGAAAGACTCCGCGTGTTTGACCCCGTTACATTCGGGCACGGGCACCACCGTCAACGAAAACATCACCGCAGGAGCAGCAGCAGAGCAAGCCTAGCGGATACAACTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

231

Amino Acids

26.77

Weight (kDa)

8.56

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	5 - 111	4.3e-31	Glycosyl hydrolases family 16
XET_C	PF06955	151 - 186	3.3e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	621
AccII	CGCG	2 cut(s)	460, 591
AciI	CCGC	3 cut(s)	589, 646, 674
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	4 cut(s)	149, 282, 295, 383
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	449
AgsI	TTSAA	2 cut(s)	346, 398
AleI	CACNNNNGTG	1 cut(s)	553
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
AlwI	GGATC	4 cut(s)	149, 282, 295, 383
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	654, 657
ArsI	GACNNNNNNTTYG	4 cut(s)	245, 277, 306, 338
AsiGI	ACCGGT	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	251, 635
BaeGI	GKGCMC	2 cut(s)	618, 624
BamHI	GGATCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	621
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbvI	GCAGC	2 cut(s)	666, 669
BccI	CCATC	3 cut(s)	226, 278, 472
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	1 cut(s)	561
BfaI	CTAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	2 cut(s)	655, 658
BlsI	GCNGC	2 cut(s)	656, 659
BmiI	GGNNCC	2 cut(s)	289, 623
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	427
BsaWI	WCCGGW	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	127, 175
Bse3DI	GCAATG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	2 cut(s)	289, 483
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	127, 175
BseSI	GKGCMC	2 cut(s)	618, 624
BseXI	GCAGC	2 cut(s)	666, 669
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	2 cut(s)	460, 591
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	621
BshTI	ACCGGT	1 cut(s)	449
BshVI	ATCGAT	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	618, 624
Bsp143I	GATC	4 cut(s)	154, 287, 388, 561
BspACI	CCGC	3 cut(s)	589, 646, 674
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	2 cut(s)	460, 591
BspLI	GGNNCC	2 cut(s)	289, 623
BspPI	GGATC	4 cut(s)	149, 282, 295, 383
BspT107I	GGYRCC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	127, 175
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	4 cut(s)	154, 287, 388, 561
BssT1I	CCWWGG	1 cut(s)	427
Bst4CI	ACNGT	2 cut(s)	182, 629
Bst6I	CTCTTC	2 cut(s)	126, 488
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	289, 483
BstFNI	CGCG	2 cut(s)	460, 591
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	157, 290, 391, 564
BstMBI	GATC	4 cut(s)	154, 287, 388, 561
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 654, 666, 671
BstNSI	RCATGY	1 cut(s)	19
BstSLI	GKGCMC	2 cut(s)	618, 624
BstUI	CGCG	2 cut(s)	460, 591
BstV1I	GCAGC	2 cut(s)	666, 669
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	1 cut(s)	350
BsuTUI	ATCGAT	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	289, 483
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	178
CspAI	ACCGGT	1 cut(s)	449
CviAII	CATG	3 cut(s)	16, 32, 374
CviJI	RGCY	6 cut(s)	256, 299, 350, 378, 578, 669
CviKI_1	RGCY	6 cut(s)	256, 299, 350, 378, 578, 669
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	4 cut(s)	156, 289, 390, 563
DpnII	GATC	4 cut(s)	154, 287, 388, 561
Eam1104I	CTCTTC	2 cut(s)	126, 488
EarI	CTCTTC	2 cut(s)	126, 488
Eco130I	CCWWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	3 cut(s)	19, 35, 377
FatI	CATG	3 cut(s)	15, 31, 373
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	655, 658
FokI	GGATG	2 cut(s)	296, 490
Fsp4HI	GCNGC	2 cut(s)	655, 658
FspBI	CTAG	1 cut(s)	671
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	2 cut(s)	655, 658
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	19, 35, 377
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	325, 632
HindII	GTYRAC	2 cut(s)	325, 632
HinfI	GANTC	3 cut(s)	197, 321, 585
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	2 cut(s)	251, 635
Hpy166II	GTNNAC	2 cut(s)	325, 632
Hpy188I	TCNGA	6 cut(s)	90, 163, 226, 292, 361, 436
Hpy188III	TCNNGA	2 cut(s)	190, 490
Hpy8I	GTNNAC	2 cut(s)	325, 632
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	2 cut(s)	182, 629
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 654, 666, 671
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	19, 35, 377
HspAI	GCGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	154, 287, 388, 561
LmnI	GCTCC	3 cut(s)	343, 550, 651
Lsp1109I	GCAGC	2 cut(s)	666, 669
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	239, 454, 604
MalI	GATC	4 cut(s)	156, 289, 390, 563
MboI	GATC	4 cut(s)	154, 287, 388, 561
MboII	GAAGA	2 cut(s)	143, 505
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	618, 624
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	3 cut(s)	191, 330, 579
MnlI	CCTC	8 cut(s)	62, 75, 157, 220, 259, 302, 468, 489
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	378, 553
MspI	CCGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	13
MvnI	CGCG	2 cut(s)	460, 591
MwoI	GCNNNNNNNGC	4 cut(s)	111, 654, 666, 671
NdeII	GATC	4 cut(s)	154, 287, 388, 561
NlaIII	CATG	3 cut(s)	19, 35, 377
NlaIV	GGNNCC	2 cut(s)	289, 623
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	553
PciI	ACATGT	1 cut(s)	15
PctI	GAATGC	1 cut(s)	13
PinAI	ACCGGT	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	656, 659
PleI	GAGTC	3 cut(s)	191, 329, 579
PpsI	GAGTC	3 cut(s)	191, 329, 579
PscI	ACATGT	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	289, 623
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	378, 553
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	655, 658
Sau3AI	GATC	4 cut(s)	154, 287, 388, 561
SchI	GAGTC	3 cut(s)	191, 330, 579
SduI	GDGCHC	2 cut(s)	618, 624
SetI	ASST	6 cut(s)	99, 366, 405, 433, 543, 580
SmiMI	CAYNNNNRTG	2 cut(s)	378, 553
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	3 cut(s)	589, 646, 674
SspMI	CTAG	1 cut(s)	671
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	182, 629
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	4 cut(s)	5, 42, 48, 251
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	654, 657
Tsp45I	GTSAC	1 cut(s)	239
TspRI	CASTG	1 cut(s)	121
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.