Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

1054660 .. 1057667

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1016500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGGTTTTTTCATCTGGGATTGTTTCTGTGTGCCTGCCAAGTGCTTGTTCTTGGAGTTGTTGCTTCTGCACCCTCTGGAAATTTACCAATCATACCCTTCGATGAAGGGTACACCAAGCTTTTTGGGGATGACAATTTGATGATCCTTAGAGATGGGAAATCCGTCCATCTCTCACTAGACGAACGGACAGGGTCTGGATTTGTTTCTCAGGACCTCTACCAGCATGGGTTTTTCAGTGCTTCCATTAAGCTGCCTGCTGATTACACCGCTGGAGTTGTTGTTGCGTTTTATATGTCAAATGGTGACATGTTTCCGAAGCACCATGATGAAATTGATTTCGAGTTCTTGGGGAATATACGGGGCAAAGAATGGAGGGTTCAGACCAATATTTACGGCAACGGAAGCACCAACACCGGCAGGGAAGAGAGATACAATCTCTGGTTTGATCCGTCCGACGATTACCATCAGTACAGCATTCTCTGGACTGACTCTCAGATCATCTTTTATGTTGACAATGTTCCCATTAGAGAGTTCAAGAAAACAGAATCGATGGGTGGTGACTTCCCTGCTAAGCCAATGTCATTGTATGCCACAATATGGGATGGATCTGATTGGGCTACCAATGGTGGCAAATACCGAGTGAATTACAAGTACTCTCCCTATTTGGCTGAGTTCTCCGACCTTGTTCTACACGGCTGTGCGGTCGATCCAATCGAACAATTATCAAAGAAGTGCGAAAACACCCAAAATTCAGAATCAGTCCCTACTGGTGTCACCCGCCTCCAAAGAACAAAGATGGAGGGTTTAAGGAAGAAGCACATGACATACTCCTACTGCTACGACAGAATCCGATACAAGTCTCCTCCATCAGAGTGTGTGATCAGTCCCCAAGAAGCTGAAAGACTGCGTGTGTTTGACCCCGTCACATTCGGGAAAGGGAGGCGCCGCCATGGAAAGCATCACCACCGGAGCAGAGGAAGCCAGACAGAAGAGGCAACTTCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

337

Amino Acids

38.26

Weight (kDa)

6.46

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	37 - 218	2.7e-59	Glycosyl hydrolases family 16
XET_C	PF06955	257 - 293	1.7e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	945
AccB7I	CCANNNNNTGG	1 cut(s)	600
AciI	CCGC	4 cut(s)	270, 704, 781, 949
AclWI	GGATC	4 cut(s)	139, 443, 616, 704
AcsI	RAATTY	2 cut(s)	82, 751
AcyI	GRCGYC	1 cut(s)	946
AfaI	GTAC	3 cut(s)	113, 473, 656
AfiI	CCNNNNNNNGG	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	3 cut(s)	121, 253, 899
AluI	AGCT	3 cut(s)	121, 253, 899
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	4 cut(s)	139, 443, 616, 704
AlwNI	CAGNNNCTG	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	82, 751
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	4 cut(s)	317, 572, 769, 956
AvaII	GGWCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	945
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	7 cut(s)	149, 177, 474, 547, 599, 793, 877
BceAI	ACGGC	2 cut(s)	412, 712
BclI	TGATCA	1 cut(s)	882
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	949
BisI	GCNGC	2 cut(s)	254, 949
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	2 cut(s)	255, 950
BmcAI	AGTACT	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	947
BmsI	GCATC	1 cut(s)	970
BpmI	CTGGAG	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	946
BsaJI	CCNNGG	1 cut(s)	952
BsaWI	WCCGGW	1 cut(s)	969
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	775
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	2 cut(s)	136, 610
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	224, 509, 663
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	855
BseXI	GCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	708
BshNI	GGYRCC	1 cut(s)	945
BshVI	ATCGAT	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	417, 970
BslFI	GGGAC	2 cut(s)	749, 873
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	2 cut(s)	749, 873
BsmI	GAATGC	1 cut(s)	477
Bsp143I	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	952
BspACI	CCGC	4 cut(s)	270, 704, 781, 949
BspCNI	CTCAG	3 cut(s)	223, 508, 664
BspDI	ATCGAT	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	947
BspPI	GGATC	4 cut(s)	139, 443, 616, 704
BspT107I	GGYRCC	1 cut(s)	945
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	775
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
BssNI	GRCGYC	1 cut(s)	946
BssT1I	CCWWGG	1 cut(s)	952
Bst6I	CTCTTC	2 cut(s)	420, 987
BstACI	GRCGYC	1 cut(s)	946
BstC8I	GCNNGC	2 cut(s)	37, 258
BstDEI	CTNAG	5 cut(s)	149, 210, 495, 573, 672
BstDSI	CCRYGG	1 cut(s)	952
BstF5I	GGATG	2 cut(s)	136, 610
BstH2I	RGCGCY	1 cut(s)	949
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	6 cut(s)	147, 451, 501, 611, 712, 885
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 981
BstNSI	RCATGY	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
Bsu15I	ATCGAT	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	2 cut(s)	136, 610
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	37, 258
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	948
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	112, 472, 655
CviAII	CATG	5 cut(s)	227, 310, 326, 823, 953
CviJI	RGCY	8 cut(s)	121, 253, 577, 620, 671, 699, 899, 984
CviKI_1	RGCY	8 cut(s)	121, 253, 577, 620, 671, 699, 899, 984
CviQI	GTAC	3 cut(s)	112, 472, 655
DdeI	CTNAG	5 cut(s)	149, 210, 495, 573, 672
DinI	GGCGCC	1 cut(s)	947
DpnI	GATC	6 cut(s)	146, 450, 500, 610, 711, 884
DpnII	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
Eam1104I	CTCTTC	2 cut(s)	420, 987
EarI	CTCTTC	2 cut(s)	420, 987
Eco130I	CCWWGG	1 cut(s)	952
Eco47I	GGWCC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	952
EgeI	GGCGCC	1 cut(s)	947
EheI	GGCGCC	1 cut(s)	947
ErhI	CCWWGG	1 cut(s)	952
FaeI	CATG	5 cut(s)	230, 313, 329, 826, 956
FaqI	GGGAC	2 cut(s)	749, 873
FatI	CATG	5 cut(s)	226, 309, 325, 822, 952
FauI	CCCGC	1 cut(s)	788
FbaI	TGATCA	1 cut(s)	882
Fnu4HI	GCNGC	2 cut(s)	254, 949
FokI	GGATG	2 cut(s)	143, 617
Fsp4HI	GCNGC	2 cut(s)	254, 949
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	2 cut(s)	254, 949
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	949
HapII	CCGG	2 cut(s)	417, 970
HhaI	GCGC	1 cut(s)	948
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	230, 313, 329, 826, 956
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	491, 548, 758, 849
HpaII	CCGG	2 cut(s)	417, 970
HphI	GGTGA	4 cut(s)	317, 572, 769, 956
Hpy166II	GTNNAC	2 cut(s)	114, 514
Hpy188III	TCNNGA	6 cut(s)	78, 198, 212, 484, 538, 934
Hpy8I	GTNNAC	2 cut(s)	114, 514
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	101, 109
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 981
HpyF3I	CTNAG	5 cut(s)	149, 210, 495, 573, 672
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	5 cut(s)	230, 313, 329, 826, 956
HspAI	GCGC	1 cut(s)	946
KasI	GGCGCC	1 cut(s)	945
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
LmnI	GCTCC	1 cut(s)	972
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	4 cut(s)	305, 560, 775, 925
MalI	GATC	6 cut(s)	146, 450, 500, 610, 711, 884
MboI	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
MboII	GAAGA	3 cut(s)	437, 826, 1004
MflI	RGATCY	1 cut(s)	608
MluCI	AATT	6 cut(s)	82, 136, 333, 646, 722, 751
Mly113I	GGCGCC	1 cut(s)	946
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	480, 705
MnlI	CCTC	9 cut(s)	85, 227, 369, 794, 796, 876, 936, 971, 988
MseI	TTAA	2 cut(s)	249, 809
MslI	CAYNNNNRTG	3 cut(s)	327, 699, 874
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	417, 970
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	405, 981
NarI	GGCGCC	1 cut(s)	946
NcoI	CCATGG	1 cut(s)	952
NdeII	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
NlaIII	CATG	5 cut(s)	230, 313, 329, 826, 956
NlaIV	GGNNCC	1 cut(s)	947
NmuCI	GTSAC	4 cut(s)	305, 560, 775, 925
NspI	RCATGY	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	699
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	548, 758, 849
PflFI	GACNNNGTC	2 cut(s)	193, 923
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	2 cut(s)	255, 950
PleI	GAGTC	1 cut(s)	485
PluTI	GGCGCC	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	947
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	2 cut(s)	193, 923
RsaI	GTAC	3 cut(s)	113, 473, 656
RsaNI	GTAC	3 cut(s)	112, 472, 655
RseI	CAYNNNNRTG	3 cut(s)	327, 699, 874
SaqAI	TTAA	2 cut(s)	249, 809
SatI	GCNGC	2 cut(s)	254, 949
Sau3AI	GATC	6 cut(s)	144, 448, 498, 608, 709, 882
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	485
SetI	ASST	5 cut(s)	123, 219, 255, 687, 901
SfaNI	GCATC	1 cut(s)	970
SfoI	GGCGCC	1 cut(s)	947
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	3 cut(s)	327, 699, 874
Sse9I	AATT	6 cut(s)	82, 136, 333, 646, 722, 751
SsiI	CCGC	4 cut(s)	270, 704, 781, 949
SspDI	GGCGCC	1 cut(s)	945
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	952
TaqI	TCGA	5 cut(s)	102, 342, 551, 708, 717
TasI	AATT	6 cut(s)	82, 136, 333, 646, 722, 751
TatI	WGTACW	2 cut(s)	471, 654
TauI	GCSGC	1 cut(s)	951
TfiI	GAWTC	3 cut(s)	548, 758, 849
Tru1I	TTAA	2 cut(s)	249, 809
Tru9I	TTAA	2 cut(s)	249, 809
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	4 cut(s)	305, 560, 775, 925
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	4 cut(s)	305, 560, 775, 925
TspDTI	ATGAA	2 cut(s)	120, 345
TspGWI	ACGGA	4 cut(s)	154, 202, 417, 441
TspRI	CASTG	1 cut(s)	244
Tth111I	GACNNNGTC	2 cut(s)	193, 923
Van91I	CCANNNNNTGG	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	82, 751
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.