Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Forward (+)

31780500 .. 31783460

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G337000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTTTCTCTCATCTGGGATTGTTTGTCTGTGCTTGCCATGTGCTTGTTCTAGGAGCTCTCGCTTCTGCTTCATCCAGAAATTTACCAATCATATCCTTTGATGAAGGGTATAACAAGCTTTTTGGAGACGACAACCTCATGATCCTTAGAGATGGGAAATCCGTTCATCTCTCACTGGACGAACGGACGGGGTCTGGATTTGTTTCTCAGGACCTCTACCATCATGGATTTTTCAGTGCTTCCATTAAGTTGCCCGCTGATTATACTGCTGGAGTTGTTGTTGCCTTTTATATGTCAAATGGTGACATGTTTCCGAAGAACCATGACGAAATTGATTTTGAGTTTTTGGGGAATATACGAGGCAAAGAATGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAGCACCGGCAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGATGATTTCCATCAGTACAGTATTCTCTGGACTGACTCTCAGATCATATTTTATGTGGACGATGTTCCCATTAGAGAGGTTAAGAGAACAGAATCTATGGGTGGTGACTTTCCCTCTAAGCCAATGTCATTGTATGCCACAATATGGGATGGATCTGATTGGGCTACCAATGGTGGAAAATACAGAGTGAATTACAAGTATGCCCCGTATTTGGCCCAGTTCTCTGACCTTGTTCTACACGGCTGTGCAGTTGATCCAATTGAACAGTTATCCAAGAAGTGTGATAACACCCGAAGTTCTGAATCGGTACCTACTGGTGTTACACGCCTACAAAGAATTAAAATGGATAGTTTCAGGAAGAAGCACATGACATACTCCTACTGCTATGACAGAATCCGATACAAGTCTCCTCCTCCAGAGTGTGTGATTAATCCCCAAGAAGCTGAAAGGCTGCGAGTGTTTGACCCCGTCACATTCGGGAAAGGGAGACGCCACCATGGAAAGCATCACCACCGGAGCAGAGGAAGCCAGGCAGAGGGCCACTTCTATATGAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

339

Amino Acids

38.61

Weight (kDa)

6.94

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	763
AccB1I	GGYRCC	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	600
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	4 cut(s)	139, 443, 616, 704
AcsI	RAATTY	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	946
AfaI	GTAC	2 cut(s)	473, 765
AfiI	CCNNNNNNNGG	3 cut(s)	600, 667, 991
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	719
AjnI	CCWGG	1 cut(s)	984
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	3 cut(s)	59, 121, 899
AluI	AGCT	3 cut(s)	59, 121, 899
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	3 cut(s)	123, 867, 937
AlwI	GGATC	4 cut(s)	139, 443, 616, 704
AoxI	GGCC	2 cut(s)	669, 994
ApeKI	GCWGC	1 cut(s)	907
ApoI	RAATTY	1 cut(s)	82
AseI	ATTAAT	1 cut(s)	885
Asp718I	GGTACC	1 cut(s)	763
AspS9I	GGNCC	3 cut(s)	214, 670, 994
AsuHPI	GGTGA	3 cut(s)	317, 572, 956
AvaII	GGWCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	894
BccI	CCATC	4 cut(s)	149, 231, 474, 599
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	1 cut(s)	986
BcoDI	GTCTC	3 cut(s)	123, 867, 937
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	908
BlsI	GCNGC	1 cut(s)	909
Bme1390I	CCNGG	1 cut(s)	986
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	3 cut(s)	214, 670, 994
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	1 cut(s)	986
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	1 cut(s)	970
BmuI	ACTGGG	1 cut(s)	667
BpmI	CTGGAG	2 cut(s)	294, 855
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	946
BsaJI	CCNNGG	1 cut(s)	952
BsaWI	WCCGGW	1 cut(s)	969
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	600, 667, 991
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	183, 673, 775
Bse3DI	GCAATG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	986
BseDI	CCNNGG	1 cut(s)	952
BseGI	GGATG	2 cut(s)	74, 610
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	600, 667, 991
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	224, 509
BseNI	ACTGG	3 cut(s)	183, 673, 775
BseRI	GAGGAG	2 cut(s)	855, 858
BseXI	GCAGC	1 cut(s)	894
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	2 cut(s)	671, 996
BshNI	GGYRCC	1 cut(s)	763
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	417, 970
BslI	CCNNNNNNNGG	3 cut(s)	600, 667, 991
BsmAI	GTCTC	3 cut(s)	123, 867, 937
BsmBI	CGTCTC	2 cut(s)	123, 937
BsnI	GGCC	2 cut(s)	671, 996
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	144, 448, 498, 608, 709
Bsp19I	CCATGG	1 cut(s)	952
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	671, 996
BspCNI	CTCAG	2 cut(s)	223, 508
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	765
BspPI	GGATC	4 cut(s)	139, 443, 616, 704
BspT107I	GGYRCC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	183, 673, 775
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	5 cut(s)	144, 448, 498, 608, 709
BssNI	GRCGYC	1 cut(s)	946
BssT1I	CCWWGG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	2 cut(s)	476, 723
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	946
BstC8I	GCNNGC	2 cut(s)	37, 258
BstDEI	CTNAG	4 cut(s)	149, 210, 495, 573
BstDSI	CCRYGG	1 cut(s)	952
BstF5I	GGATG	2 cut(s)	74, 610
BstKTI	GATC	5 cut(s)	147, 451, 501, 611, 712
BstMAI	GTCTC	3 cut(s)	123, 867, 937
BstMBI	GATC	5 cut(s)	144, 448, 498, 608, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 981
BstNI	CCWGG	1 cut(s)	986
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	984
BstV1I	GCAGC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	2 cut(s)	671, 996
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	2 cut(s)	74, 610
BtsIMutI	CAGTG	2 cut(s)	176, 244
Cac8I	GCNNGC	2 cut(s)	37, 258
CciI	TCATGA	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	3 cut(s)	214, 670, 994
CseI	GACGC	1 cut(s)	954
Csp6I	GTAC	2 cut(s)	472, 764
CviAII	CATG	7 cut(s)	41, 142, 227, 310, 326, 823, 953
CviQI	GTAC	2 cut(s)	472, 764
DdeI	CTNAG	4 cut(s)	149, 210, 495, 573
DpnI	GATC	5 cut(s)	146, 450, 500, 610, 711
DpnII	GATC	5 cut(s)	144, 448, 498, 608, 709
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	952
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	984
EcoT14I	CCWWGG	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	952
Esp3I	CGTCTC	2 cut(s)	123, 937
FaeI	CATG	7 cut(s)	44, 145, 230, 313, 329, 826, 956
FatI	CATG	7 cut(s)	40, 141, 226, 309, 325, 822, 952
FauI	CCCGC	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	908
FokI	GGATG	2 cut(s)	61, 617
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	908
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	908
GsuI	CTGGAG	2 cut(s)	294, 855
HaeIII	GGCC	2 cut(s)	671, 996
HapII	CCGG	2 cut(s)	417, 970
HgaI	GACGC	1 cut(s)	954
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	7 cut(s)	44, 145, 230, 313, 329, 826, 956
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	5 cut(s)	379, 491, 548, 758, 849
HpaII	CCGG	2 cut(s)	417, 970
HphI	GGTGA	3 cut(s)	317, 572, 956
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	8 cut(s)	318, 384, 457, 498, 613, 682, 757, 854
Hpy188III	TCNNGA	8 cut(s)	78, 142, 198, 212, 484, 811, 872, 934
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	101, 462
HpyCH4III	ACNGT	2 cut(s)	476, 723
HpyCH4V	TGCA	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 981
HpyF3I	CTNAG	4 cut(s)	149, 210, 495, 573
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	7 cut(s)	44, 145, 230, 313, 329, 826, 956
KpnI	GGTACC	1 cut(s)	767
Kzo9I	GATC	5 cut(s)	144, 448, 498, 608, 709
LmnI	GCTCC	2 cut(s)	56, 972
Lsp1109I	GCAGC	1 cut(s)	894
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	4 cut(s)	305, 560, 775, 925
MalI	GATC	5 cut(s)	146, 450, 500, 610, 711
MboI	GATC	5 cut(s)	144, 448, 498, 608, 709
MboII	GAAGA	3 cut(s)	331, 437, 826
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	5 cut(s)	82, 333, 646, 714, 792
MlyI	GAGTC	1 cut(s)	485
MseI	TTAA	4 cut(s)	249, 537, 795, 885
MslI	CAYNNNNRTG	1 cut(s)	699
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	2 cut(s)	417, 970
MspR9I	CCNGG	1 cut(s)	986
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	986
MwoI	GCNNNNNNNGC	2 cut(s)	405, 981
NcoI	CCATGG	1 cut(s)	952
NdeII	GATC	5 cut(s)	144, 448, 498, 608, 709
NlaIII	CATG	7 cut(s)	44, 145, 230, 313, 329, 826, 956
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	3 cut(s)	305, 560, 925
NspI	RCATGY	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	699
PagI	TCATGA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	309
PfeI	GAWTC	4 cut(s)	379, 548, 758, 849
PflFI	GACNNNGTC	2 cut(s)	193, 923
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	909
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	984
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	3 cut(s)	214, 670, 994
PspPPI	RGGWCCY	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	2 cut(s)	193, 923
RsaI	GTAC	2 cut(s)	473, 765
RsaNI	GTAC	2 cut(s)	472, 764
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	4 cut(s)	249, 537, 795, 885
SatI	GCNGC	1 cut(s)	908
Sau3AI	GATC	5 cut(s)	144, 448, 498, 608, 709
Sau96I	GGNCC	3 cut(s)	214, 670, 994
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	986
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	8 cut(s)	61, 123, 141, 219, 537, 687, 769, 901
SfaNI	GCATC	1 cut(s)	970
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	5 cut(s)	82, 333, 646, 714, 792
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	984
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	2 cut(s)	476, 723
TasI	AATT	5 cut(s)	82, 333, 646, 714, 792
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	4 cut(s)	379, 548, 758, 849
Tru1I	TTAA	4 cut(s)	249, 537, 795, 885
Tru9I	TTAA	4 cut(s)	249, 537, 795, 885
TscAI	CASTG	2 cut(s)	183, 244
TseFI	GTSAC	3 cut(s)	305, 560, 925
TseI	GCWGC	1 cut(s)	907
Tsp45I	GTSAC	3 cut(s)	305, 560, 925
TspDTI	ATGAA	3 cut(s)	63, 120, 158
TspGWI	ACGGA	2 cut(s)	154, 202
TspRI	CASTG	2 cut(s)	183, 244
Tth111I	GACNNNGTC	2 cut(s)	193, 923
Van91I	CCANNNNNTGG	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	885
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.