Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Forward (+)

385171 .. 387478

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGACTCTGAGTCGTTTATTGGTTTTCATGTCTCTGTTTTCCGGTTTAGTTTCTGGATTTGCTCTGCAAAATCTTCCAATCACATCTTTTGAAGAAAGTTACACTCAACTTTTTGGTGACAAGAACTTATTTGTTCATCAAGATGGCAAATCTGTCCGGTTAACGCTCGATGAAAGAACCGGTTCCGGTTTTGTTTCAAATGATTATTACTTGCATGGATTCTTCAGTGCTTCAATTAAATTACCTTCTGATTATACAGCTGGAGTTGTTGTTGCCTTTTATATGTCTAATGGAGATATGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGTAACATTAGAGAAAAAGAATGGAGAGTTCAGACAAACATTTACGGTAATGGAAGTACTCATTCAGGAAGAGAAGAGAGATATAATCTCTGGTTTGATCCTACTGAAGATTTTCATCAATACAGTATCCTCTGGTCTGATTCTCACATCATATTCTTTGTAGACAATGTTCCTATTAGAGAGGTCAAACGTACTGCGGAAATGGGTGGTCACTTTCCATCAAAGCCGATGTCTCTCTACACAACAATATGGGACGGTTCTAAATGGGCAACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCGCCTTACATTGCGCGGTTCTCGGATCTAGTCCTGCACGGCTGCCCCGTGGACCCTATCGAGCAGTTTCCGAGGTGCGATGAAGGCGCGGCTGAGGATATGCGTGCGGCGCAAGAGATTACTCCTTCACAAAGGAGTAAAATGGATGTTTTCAGACGGAGACTCATGACATATTCATATTGCTATGATCGGGCTAGGTACAATGTTGCTTTATCGGAGTGTGTGGTGAATCCCGCTGAGGCTCAAAGGCTTAGGGTTTATGATCCGGTCAGATTTGGCGGCATTCCGAGGCGCCACCGCAATGGAAAGCACCGGAGCAAGAGAAGCCGGGTTGATGGAACCGAGTCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

333

Amino Acids

38.41

Weight (kDa)

6.56

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	32 - 215	4.1e-59	Glycosyl hydrolases family 16
XET_C	PF06955	250 - 290	3.2e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	939
AccI	GTMKAC	1 cut(s)	504
AccII	CGCG	2 cut(s)	664, 737
AciI	CCGC	7 cut(s)	539, 664, 737, 755, 882, 927, 946
AclWI	GGATC	3 cut(s)	434, 681, 905
AcuI	CTGAAG	2 cut(s)	211, 468
AcyI	GRCGYC	1 cut(s)	940
AfaI	GTAC	4 cut(s)	400, 535, 629, 848
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	95, 201, 237
AhdI	GACNNNNNGTC	1 cut(s)	12
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	3 cut(s)	39, 579, 802
AlwI	GGATC	3 cut(s)	434, 681, 905
ApeKI	GCWGC	1 cut(s)	690
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AsiGI	ACCGGT	1 cut(s)	182
Asp700I	GAANNNNTTC	2 cut(s)	184, 453
AspLEI	GCGC	5 cut(s)	652, 664, 737, 760, 942
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	977
AsuHPI	GGTGA	2 cut(s)	131, 886
AvaII	GGWCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	939
BbvCI	CCTCAGC	2 cut(s)	741, 885
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	3 cut(s)	140, 568, 977
BceAI	ACGGC	1 cut(s)	703
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	977
BcoDI	GTCTC	3 cut(s)	39, 579, 802
BfaI	CTAG	2 cut(s)	677, 843
BfoI	RGCGCY	1 cut(s)	943
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	4 cut(s)	691, 738, 756, 928
BlsI	GCNGC	4 cut(s)	692, 739, 757, 929
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	977
Bme18I	GGWCC	1 cut(s)	700
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	4 cut(s)	187, 702, 941, 988
BmrFI	CCNGG	1 cut(s)	977
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	3 cut(s)	741, 885, 899
BpuMI	CCSGG	1 cut(s)	977
BsaBI	GATNNNNATC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	940
BsaJI	CCNNGG	3 cut(s)	696, 719, 935
BsaWI	WCCGGW	6 cut(s)	44, 159, 182, 188, 913, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse118I	RCCGGY	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	657, 955
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	696, 719, 935
BseGI	GGATG	1 cut(s)	799
BseJI	GATNNNNATC	1 cut(s)	456
BseMI	GCAATG	2 cut(s)	657, 955
BseMII	CTCAG	2 cut(s)	732, 876
BseXI	GCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	664, 737
BshNI	GGYRCC	1 cut(s)	939
BshTI	ACCGGT	1 cut(s)	182
BsiSI	CCGG	7 cut(s)	45, 160, 183, 189, 914, 961, 976
BslFI	GGGAC	1 cut(s)	608
BsmAI	GTCTC	3 cut(s)	39, 579, 802
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	930
Bsp143I	GATC	4 cut(s)	439, 673, 835, 910
BspACI	CCGC	7 cut(s)	539, 664, 737, 755, 882, 927, 946
BspCNI	CTCAG	2 cut(s)	733, 877
BspFNI	CGCG	2 cut(s)	664, 737
BspHI	TCATGA	2 cut(s)	316, 813
BspLI	GGNNCC	4 cut(s)	187, 702, 941, 988
BspPI	GGATC	3 cut(s)	434, 681, 905
BspT107I	GGYRCC	1 cut(s)	939
BsrDI	GCAATG	2 cut(s)	657, 955
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	696, 719, 935
BssMI	GATC	4 cut(s)	439, 673, 835, 910
BssNI	GRCGYC	1 cut(s)	940
Bst4CI	ACNGT	5 cut(s)	389, 467, 599, 620, 632
Bst6I	CTCTTC	2 cut(s)	406, 411
BstACI	GRCGYC	1 cut(s)	940
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	4 cut(s)	11, 741, 885, 899
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	1 cut(s)	799
BstFNI	CGCG	2 cut(s)	664, 737
BstH2I	RGCGCY	1 cut(s)	943
BstHHI	GCGC	5 cut(s)	652, 664, 737, 760, 942
BstKTI	GATC	4 cut(s)	442, 676, 838, 913
BstMAI	GTCTC	3 cut(s)	39, 579, 802
BstMBI	GATC	4 cut(s)	439, 673, 835, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	732, 757, 972
BstSCI	CCNGG	1 cut(s)	975
BstUI	CGCG	2 cut(s)	664, 737
BstV1I	GCAGC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	673
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	479
BtgI	CCRYGG	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	799
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	753
CciI	TCATGA	2 cut(s)	316, 813
CfoI	GCGC	5 cut(s)	652, 664, 737, 760, 942
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	700
Csp6I	GTAC	4 cut(s)	399, 534, 628, 847
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	4 cut(s)	31, 218, 317, 814
CviJI	RGCY	8 cut(s)	263, 568, 690, 740, 842, 890, 898, 975
CviKI_1	RGCY	8 cut(s)	263, 568, 690, 740, 842, 890, 898, 975
CviQI	GTAC	4 cut(s)	399, 534, 628, 847
DdeI	CTNAG	4 cut(s)	11, 741, 885, 899
DinI	GGCGCC	1 cut(s)	941
DpnI	GATC	4 cut(s)	441, 675, 837, 912
DpnII	GATC	4 cut(s)	439, 673, 835, 910
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	406, 411
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	2 cut(s)	406, 411
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	2 cut(s)	211, 468
EgeI	GGCGCC	1 cut(s)	941
EheI	GGCGCC	1 cut(s)	941
FaeI	CATG	4 cut(s)	34, 221, 320, 817
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	4 cut(s)	30, 217, 316, 813
FauI	CCCGC	1 cut(s)	889
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	691, 738, 756, 928
FokI	GGATG	1 cut(s)	806
Fsp4HI	GCNGC	4 cut(s)	691, 738, 756, 928
FspBI	CTAG	2 cut(s)	677, 843
GlaI	GCGC	5 cut(s)	651, 663, 736, 759, 941
GluI	GCNGC	4 cut(s)	691, 738, 756, 928
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	943
HapII	CCGG	7 cut(s)	45, 160, 183, 189, 914, 961, 976
HhaI	GCGC	5 cut(s)	652, 664, 737, 760, 942
Hin1I	GRCGYC	1 cut(s)	940
Hin1II	CATG	4 cut(s)	34, 221, 320, 817
Hin6I	GCGC	5 cut(s)	650, 662, 735, 758, 940
HinP1I	GCGC	5 cut(s)	650, 662, 735, 758, 940
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	8 cut(s)	7, 13, 222, 313, 482, 810, 877, 992
HpaI	GTTAAC	1 cut(s)	165
HpaII	CCGG	7 cut(s)	45, 160, 183, 189, 914, 961, 976
HphI	GGTGA	2 cut(s)	131, 886
Hpy166II	GTNNAC	4 cut(s)	165, 505, 637, 700
Hpy188III	TCNNGA	5 cut(s)	57, 143, 317, 408, 814
Hpy8I	GTNNAC	4 cut(s)	165, 505, 637, 700
HpyAV	CCTTC	3 cut(s)	258, 725, 783
HpyCH4III	ACNGT	5 cut(s)	389, 467, 599, 620, 632
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	3 cut(s)	70, 217, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	732, 757, 972
HpyF3I	CTNAG	4 cut(s)	11, 741, 885, 899
HpySE526I	ACGT	1 cut(s)	532
Hsp92I	GRCGYC	1 cut(s)	940
Hsp92II	CATG	4 cut(s)	34, 221, 320, 817
HspAI	GCGC	5 cut(s)	650, 662, 735, 758, 940
KasI	GGCGCC	1 cut(s)	939
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	439, 673, 835, 910
LmnI	GCTCC	1 cut(s)	963
Lsp1109I	GCAGC	1 cut(s)	677
MaeI	CTAG	2 cut(s)	677, 843
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	4 cut(s)	101, 119, 344, 551
MalI	GATC	4 cut(s)	441, 675, 837, 912
MboI	GATC	4 cut(s)	439, 673, 835, 910
MboII	GAAGA	7 cut(s)	68, 107, 217, 322, 423, 428, 461
MflI	RGATCY	1 cut(s)	673
MluCI	AATT	2 cut(s)	237, 242
Mly113I	GGCGCC	1 cut(s)	940
MlyI	GAGTC	3 cut(s)	22, 804, 1001
MnlI	CCTC	6 cut(s)	482, 517, 714, 736, 880, 930
MroXI	GAANNNNTTC	2 cut(s)	184, 453
MseI	TTAA	2 cut(s)	164, 240
MslI	CAYNNNNRTG	2 cut(s)	144, 948
MspA1I	CMGCKG	2 cut(s)	263, 884
MspI	CCGG	7 cut(s)	45, 160, 183, 189, 914, 961, 976
MspR9I	CCNGG	1 cut(s)	977
Mva1269I	GAATGC	1 cut(s)	930
MvnI	CGCG	2 cut(s)	664, 737
MwoI	GCNNNNNNNGC	3 cut(s)	732, 757, 972
NarI	GGCGCC	1 cut(s)	940
NciI	CCSGG	1 cut(s)	977
NdeII	GATC	4 cut(s)	439, 673, 835, 910
NlaIII	CATG	4 cut(s)	34, 221, 320, 817
NlaIV	GGNNCC	4 cut(s)	187, 702, 941, 988
NmuCI	GTSAC	2 cut(s)	119, 551
PagI	TCATGA	2 cut(s)	316, 813
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PctI	GAATGC	1 cut(s)	930
PdmI	GAANNNNTTC	2 cut(s)	184, 453
PfeI	GAWTC	4 cut(s)	222, 313, 482, 877
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	692, 739, 757, 929
PleI	GAGTC	3 cut(s)	21, 804, 1000
PluTI	GGCGCC	1 cut(s)	943
PpsI	GAGTC	3 cut(s)	21, 804, 1000
PspN4I	GGNNCC	4 cut(s)	187, 702, 941, 988
PspPI	GGNCC	1 cut(s)	700
PsrI	GAACNNNNNNTAC	2 cut(s)	495, 527
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	4 cut(s)	400, 535, 629, 848
RsaNI	GTAC	4 cut(s)	399, 534, 628, 847
RseI	CAYNNNNRTG	2 cut(s)	144, 948
SaqAI	TTAA	2 cut(s)	164, 240
SatI	GCNGC	4 cut(s)	691, 738, 756, 928
Sau3AI	GATC	4 cut(s)	439, 673, 835, 910
Sau96I	GGNCC	1 cut(s)	700
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	3 cut(s)	22, 804, 1001
ScrFI	CCNGG	1 cut(s)	977
SetI	ASST	6 cut(s)	250, 265, 528, 535, 725, 848
SfoI	GGCGCC	1 cut(s)	941
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	2 cut(s)	144, 948
Sse9I	AATT	2 cut(s)	237, 242
SsiI	CCGC	7 cut(s)	539, 664, 737, 755, 882, 927, 946
SspDI	GGCGCC	1 cut(s)	939
SspMI	CTAG	2 cut(s)	677, 843
StyD4I	CCNGG	1 cut(s)	975
TaaI	ACNGT	5 cut(s)	389, 467, 599, 620, 632
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	171, 708, 995
TasI	AATT	2 cut(s)	237, 242
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	3 cut(s)	740, 758, 930
TfiI	GAWTC	4 cut(s)	222, 313, 482, 877
Tru1I	TTAA	2 cut(s)	164, 240
Tru9I	TTAA	2 cut(s)	164, 240
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	2 cut(s)	119, 551
TseI	GCWGC	1 cut(s)	690
Tsp45I	GTSAC	2 cut(s)	119, 551
TspDTI	ATGAA	6 cut(s)	19, 128, 189, 446, 744, 813
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	2 cut(s)	184, 453
XspI	CTAG	2 cut(s)	677, 843
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.