Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

62734742 .. 62737682

Gene Structure 2941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGTTACTACTATTCTCATCTGCGGTTGTTTGCTTTGGTTGTTCTTGTAGCCGTTGTCTCTACCTCAGCCAAAAATTTACCAATTATATCCTTTGATGATGGATATAACAAGCTCTTTGGGGACGACAATCTGATGATTCTCAGGGACGGGAAATCCGTTCATCTTACGTTAAACGAACGGACAGGGTCTGGGTTTGTTTCTCAAGACCTTTATATTCATGGGTTCTTCAGTGCCTCCATTAAGTTGCCAACTGATTATACTGCCGGAATTGTGGTCGCCTTTTATATGTCGAATGCTGACATGTTCCCCAAGAACCATGACGAAATCGATTTCGAGTTTCTGGGTAATATAAGAGGCAAAGAATGGAGGGTTCAGACCAACGTTTATGGCAATGGAAGCACTGATACTGGGAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGAGGATTACCACCAGTACAGTATTCTCTGGACTGACTCTCATATCATATTCTATGTTGACAATATTCCCATTAGAGTGGTTAAGAAATCAGAGGCGATGGGTGGTGACTATCCCTCGAAGCCAATGTCATTGTATGCTACAATATGGGATGGATCTGATTGGGCTACCAATGGAGGCAAATATAGAGTCAACTACAAGTATGCTCCATTCAAGGCCGAGTTCTCTGACCTTGTTCTACATGGCTGTGCAGTTGATCCAATTGAACAGGTATCAAAGAAATGTGATAAAACCCAAGGTTCTGAATATATCCCTACCGGTGTTACGCGCCTACAAAGAATGAGGATGGAGAGTTTCAGGAAGAGGCAGATGACATACTCCTATTGCTACGACAGAATACGATACAAGGTTGCTCCACCAGAGTGTGTGATCAATCCCCAAGAAGCTGAAAGACTCCGCGTGTTTGACCCCGTTACATTCGGGCATGGGCACCACCGTCAACGAAAACATCACCGCAGGAGCAGCAGCAGAGCAAGCCTAGCGGATACCACTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

335

Amino Acids

38.56

Weight (kDa)

8.19

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 216	1.4e-59	Glycosyl hydrolases family 16
XET_C	PF06955	256 - 291	5.2e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	936
AccII	CGCG	2 cut(s)	775, 906
AciI	CCGC	4 cut(s)	25, 904, 961, 989
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	3 cut(s)	437, 610, 698
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	214
AfaI	GTAC	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	303
AgeI	ACCGGT	1 cut(s)	764
AgsI	TTSAA	2 cut(s)	661, 713
AleI	CACNNNNGTG	1 cut(s)	868
AluBI	AGCT	2 cut(s)	115, 893
AluI	AGCT	2 cut(s)	115, 893
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	3 cut(s)	437, 610, 698
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	2 cut(s)	969, 972
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	4 cut(s)	560, 592, 621, 653
AsiGI	ACCGGT	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	566, 950
BaeGI	GKGCMC	1 cut(s)	939
BanI	GGYRCC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
BbvCI	CCTCAGC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	981, 984
BccI	CCATC	4 cut(s)	95, 541, 593, 787
BceAI	ACGGC	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	985
BclI	TGATCA	1 cut(s)	876
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	986
BfuI	GTATCC	1 cut(s)	985
BisI	GCNGC	2 cut(s)	970, 973
BlsI	GCNGC	2 cut(s)	971, 974
BmiI	GGNNCC	1 cut(s)	938
BmrI	ACTGGG	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	742
BsaWI	WCCGGW	1 cut(s)	764
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	415, 463
Bse3DI	GCAATG	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	742
BseGI	GGATG	2 cut(s)	604, 798
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	81, 157, 441
BseNI	ACTGG	2 cut(s)	415, 463
BseSI	GKGCMC	1 cut(s)	939
BseXI	GCAGC	2 cut(s)	981, 984
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	775, 906
BshFI	GGCC	1 cut(s)	665
BshNI	GGYRCC	1 cut(s)	936
BshTI	ACCGGT	1 cut(s)	764
BshVI	ATCGAT	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	267, 765
BslFI	GGGAC	2 cut(s)	137, 161
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	137, 161
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp143I	GATC	4 cut(s)	442, 602, 703, 876
BspACI	CCGC	4 cut(s)	25, 904, 961, 989
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	3 cut(s)	80, 156, 442
BspDI	ATCGAT	1 cut(s)	330
BspFNI	CGCG	2 cut(s)	775, 906
BspLI	GGNNCC	1 cut(s)	938
BspPI	GGATC	3 cut(s)	437, 610, 698
BspT107I	GGYRCC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	415, 463
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	742
BssMI	GATC	4 cut(s)	442, 602, 703, 876
BssT1I	CCWWGG	1 cut(s)	742
Bst4CI	ACNGT	2 cut(s)	470, 944
Bst6I	CTCTTC	2 cut(s)	414, 803
BstC8I	GCNNGC	1 cut(s)	982
BstDEI	CTNAG	3 cut(s)	67, 143, 450
BstF5I	GGATG	2 cut(s)	604, 798
BstFNI	CGCG	2 cut(s)	775, 906
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	4 cut(s)	445, 605, 706, 879
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	442, 602, 703, 876
BstMWI	GCNNNNNNNGC	4 cut(s)	399, 969, 981, 986
BstNSI	RCATGY	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	939
BstUI	CGCG	2 cut(s)	775, 906
BstV1I	GCAGC	2 cut(s)	981, 984
BstX2I	RGATCY	1 cut(s)	602
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	602
Bsu15I	ATCGAT	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	985
BsuRI	GGCC	1 cut(s)	665
BsuTUI	ATCGAT	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	604, 798
BtsIMutI	CAGTG	2 cut(s)	238, 402
Cac8I	GCNNGC	1 cut(s)	982
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	777
Cfr10I	RCCGGY	1 cut(s)	764
ClaI	ATCGAT	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	466
CspAI	ACCGGT	1 cut(s)	764
CviAII	CATG	5 cut(s)	221, 304, 320, 689, 932
CviJI	RGCY	9 cut(s)	53, 71, 115, 571, 614, 665, 693, 893, 984
CviKI_1	RGCY	9 cut(s)	53, 71, 115, 571, 614, 665, 693, 893, 984
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	3 cut(s)	67, 143, 450
DpnI	GATC	4 cut(s)	444, 604, 705, 878
DpnII	GATC	4 cut(s)	442, 602, 703, 876
Eam1104I	CTCTTC	2 cut(s)	414, 803
EarI	CTCTTC	2 cut(s)	414, 803
Eco130I	CCWWGG	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FaeI	CATG	5 cut(s)	224, 307, 323, 692, 935
FaqI	GGGAC	2 cut(s)	137, 161
FatI	CATG	5 cut(s)	220, 303, 319, 688, 931
FbaI	TGATCA	1 cut(s)	876
Fnu4HI	GCNGC	2 cut(s)	970, 973
FokI	GGATG	2 cut(s)	611, 805
Fsp4HI	GCNGC	2 cut(s)	970, 973
FspBI	CTAG	1 cut(s)	986
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	2 cut(s)	970, 973
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	2 cut(s)	267, 765
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	5 cut(s)	224, 307, 323, 692, 935
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HincII	GTYRAC	3 cut(s)	508, 640, 947
HindII	GTYRAC	3 cut(s)	508, 640, 947
HinfI	GANTC	4 cut(s)	139, 485, 636, 900
HpaII	CCGG	2 cut(s)	267, 765
HphI	GGTGA	2 cut(s)	566, 950
Hpy166II	GTNNAC	3 cut(s)	508, 640, 947
Hpy188I	TCNGA	7 cut(s)	135, 378, 451, 541, 607, 676, 751
Hpy188III	TCNNGA	3 cut(s)	206, 478, 805
Hpy8I	GTNNAC	3 cut(s)	508, 640, 947
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	2 cut(s)	470, 944
HpyCH4IV	ACGT	2 cut(s)	170, 384
HpyCH4V	TGCA	1 cut(s)	698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	399, 969, 981, 986
HpyF3I	CTNAG	3 cut(s)	67, 143, 450
HpySE526I	ACGT	2 cut(s)	170, 384
Hsp92II	CATG	5 cut(s)	224, 307, 323, 692, 935
HspAI	GCGC	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	876
Kzo9I	GATC	4 cut(s)	442, 602, 703, 876
LmnI	GCTCC	3 cut(s)	658, 865, 966
Lsp1109I	GCAGC	2 cut(s)	981, 984
MaeI	CTAG	1 cut(s)	986
MaeII	ACGT	2 cut(s)	170, 384
MaeIII	GTNAC	4 cut(s)	5, 554, 769, 919
MalI	GATC	4 cut(s)	444, 604, 705, 878
MboI	GATC	4 cut(s)	442, 602, 703, 876
MboII	GAAGA	3 cut(s)	220, 431, 820
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	4 cut(s)	76, 84, 270, 708
MlyI	GAGTC	3 cut(s)	479, 645, 894
MseI	TTAA	3 cut(s)	173, 243, 531
MslI	CAYNNNNRTG	3 cut(s)	524, 693, 868
MspI	CCGG	2 cut(s)	267, 765
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	2 cut(s)	775, 906
MwoI	GCNNNNNNNGC	4 cut(s)	399, 969, 981, 986
NdeII	GATC	4 cut(s)	442, 602, 703, 876
NlaIII	CATG	5 cut(s)	224, 307, 323, 692, 935
NlaIV	GGNNCC	1 cut(s)	938
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	868
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	764
PkrI	GCNGC	2 cut(s)	971, 974
PleI	GAGTC	3 cut(s)	479, 644, 894
PpsI	GAGTC	3 cut(s)	479, 644, 894
PscI	ACATGT	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	938
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	602
PsyI	GACNNNGTC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	3 cut(s)	524, 693, 868
SaqAI	TTAA	3 cut(s)	173, 243, 531
SatI	GCNGC	2 cut(s)	970, 973
Sau3AI	GATC	4 cut(s)	442, 602, 703, 876
SchI	GAGTC	3 cut(s)	479, 645, 894
SduI	GDGCHC	1 cut(s)	939
SmiMI	CAYNNNNRTG	3 cut(s)	524, 693, 868
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	76, 84, 270, 708
SsiI	CCGC	4 cut(s)	25, 904, 961, 989
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	1 cut(s)	986
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	2 cut(s)	470, 944
TaiI	ACGT	2 cut(s)	173, 387
TaqI	TCGA	4 cut(s)	293, 330, 336, 566
TasI	AATT	4 cut(s)	76, 84, 270, 708
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	173, 243, 531
Tru9I	TTAA	3 cut(s)	173, 243, 531
TscAI	CASTG	2 cut(s)	238, 409
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	2 cut(s)	969, 972
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	152, 209
TspGWI	ACGGA	2 cut(s)	148, 196
TspRI	CASTG	2 cut(s)	238, 409
Tth111I	GACNNNGTC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.