Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

908425 .. 910412

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGGTTTTTTCATCTGGGATTGTTTCTGTGTGCCTGCCAAGTGCTTGTTCTTGGAGTTGTTGCTTCTGCACCCTCTGGAAATTTACCAATCATACCCTTCGACGAAGGGTACACCAAGCTTTTTGGGGATGACAATTTGATGATCCTTAGAGATGGGAAATCCGTCCATCTCTCACTAGACGAACGGACAGGGTCTGGATTTGTTTCTCAGGACCTCTACCAGCATGGGTTTTTCAGTGCTTCCATTAAGCTGCCTGCTGATTACACTGCTGGAGTTGTTGTTGCGTTTTATATGTCGAACGGTGACATGTTTCCGAAGTACCATGATGAAATTGATTTCGAGTTTTTGGGGAATATACGGGGCAAAGAATGGAGGGTTCAGACCAATATTTACGGCAACGGAAGCACCAACACCGGCAGGGAAGAGAGATACAATCTCTGGTTTGATCCGTCCGACGATTACCATCAGTACAGCATTCTCTGGACTGACTCTCAGATCATTTTTTATGTTGACAATGTTCCCATTAGAGAGTTCAAGAAAACAGAATCAATGGGTGGTGACTTCCCTGCTAAGCCAATGTCATTGTATGCCACAATATGGGATGGATCTGATTGGGCTACCAATGGGGGCAAATACCGAGTGAATTACAAGTATGCTCCCTATTTGGCTGAGTTCTCCGACCTTGTTCTACACGGCTGTGCAGTCGTTAGATCGATCCAATCGAACAATTATCAAAGAAGTGCGAAAAGACCCAAAATTCAGAATCAGTCCCTACTGGTGTCACCCGTCTCCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

268

Amino Acids

30.2

Weight (kDa)

5.53

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	600
AclWI	GGATC	4 cut(s)	139, 443, 616, 712
AcsI	RAATTY	2 cut(s)	82, 759
AfaI	GTAC	3 cut(s)	113, 323, 473
AfiI	CCNNNNNNNGG	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	2 cut(s)	121, 253
AluI	AGCT	2 cut(s)	121, 253
Alw26I	GTCTC	1 cut(s)	796
AlwI	GGATC	4 cut(s)	139, 443, 616, 712
AlwNI	CAGNNNCTG	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	82, 759
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	317, 572, 777
AvaII	GGWCC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	4 cut(s)	149, 177, 474, 599
BceAI	ACGGC	2 cut(s)	412, 712
BcoDI	GTCTC	1 cut(s)	796
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	783
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	716
BseGI	GGATG	2 cut(s)	136, 610
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMII	CTCAG	3 cut(s)	224, 509, 663
BseNI	ACTGG	1 cut(s)	783
BseXI	GCAGC	1 cut(s)	240
BsgI	GTGCAG	2 cut(s)	54, 723
BshVI	ATCGAT	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	1 cut(s)	796
BsmBI	CGTCTC	1 cut(s)	796
BsmFI	GGGAC	1 cut(s)	757
BsmI	GAATGC	1 cut(s)	477
Bsp143I	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
Bsp1720I	GCTNAGC	1 cut(s)	573
BspCNI	CTCAG	3 cut(s)	223, 508, 664
BspDI	ATCGAT	1 cut(s)	716
BspPI	GGATC	4 cut(s)	139, 443, 616, 712
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	783
BssAI	RCCGGY	1 cut(s)	416
BssMI	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	37, 258
BstDEI	CTNAG	5 cut(s)	149, 210, 495, 573, 672
BstF5I	GGATG	2 cut(s)	136, 610
BstKTI	GATC	6 cut(s)	147, 451, 501, 611, 716, 720
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
Bsu15I	ATCGAT	1 cut(s)	716
BsuTUI	ATCGAT	1 cut(s)	716
BtsCI	GGATG	2 cut(s)	136, 610
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	244, 267
Cac8I	GCNNGC	2 cut(s)	37, 258
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	716
Csp6I	GTAC	3 cut(s)	112, 322, 472
CviAII	CATG	3 cut(s)	227, 310, 326
CviJI	RGCY	6 cut(s)	121, 253, 577, 620, 671, 699
CviKI_1	RGCY	6 cut(s)	121, 253, 577, 620, 671, 699
CviQI	GTAC	3 cut(s)	112, 322, 472
DdeI	CTNAG	5 cut(s)	149, 210, 495, 573, 672
DpnI	GATC	6 cut(s)	146, 450, 500, 610, 715, 719
DpnII	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	796
FaeI	CATG	3 cut(s)	230, 313, 329
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	3 cut(s)	226, 309, 325
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	2 cut(s)	143, 617
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	294
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	3 cut(s)	230, 313, 329
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	491, 548, 766
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	3 cut(s)	317, 572, 777
Hpy166II	GTNNAC	2 cut(s)	114, 514
Hpy188I	TCNGA	7 cut(s)	318, 384, 457, 498, 613, 682, 765
Hpy188III	TCNNGA	5 cut(s)	78, 198, 212, 484, 538
Hpy8I	GTNNAC	2 cut(s)	114, 514
Hpy99I	CGWCG	2 cut(s)	107, 461
HpyAV	CCTTC	2 cut(s)	101, 109
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	71, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	5 cut(s)	149, 210, 495, 573, 672
Hsp92II	CATG	3 cut(s)	230, 313, 329
Kzo9I	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	305, 560, 783
MalI	GATC	6 cut(s)	146, 450, 500, 610, 715, 719
MboI	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	1 cut(s)	608
MluCI	AATT	6 cut(s)	82, 136, 333, 646, 730, 759
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	480, 705
MnlI	CCTC	3 cut(s)	85, 227, 369
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeII	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
NlaIII	CATG	3 cut(s)	230, 313, 329
NmuCI	GTSAC	3 cut(s)	305, 560, 783
NspI	RCATGY	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	699
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	548, 766
PflFI	GACNNNGTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	193
RsaI	GTAC	3 cut(s)	113, 323, 473
RsaNI	GTAC	3 cut(s)	112, 322, 472
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	6 cut(s)	144, 448, 498, 608, 713, 717
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	485
SetI	ASST	4 cut(s)	123, 219, 255, 687
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	6 cut(s)	82, 136, 333, 646, 730, 759
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	5 cut(s)	102, 299, 342, 716, 725
TasI	AATT	6 cut(s)	82, 136, 333, 646, 730, 759
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	548, 766
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	244, 274
TseFI	GTSAC	3 cut(s)	305, 560, 783
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	3 cut(s)	305, 560, 783
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	4 cut(s)	154, 202, 417, 441
TspRI	CASTG	2 cut(s)	244, 274
Tth111I	GACNNNGTC	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	82, 759
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.