RLG00000006039

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005670
Physical Location & Seq
Forward (+)
3796547 .. 3798996
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006039

Sequence Viewer

Length: 807 bp
ATGGGTTACTACTACTCTCATCTGCGGTTGTTTGCTTTGGTTGTTCTTGTAGCCGTTGTCTCTACCTCAGCCAAAAATTTACCAATTATATCCTTTGATGATGGATATAACAAGCTCTTTGGGGACGACAATCTGATGATTCTCAGGGACGGGAAATCCGTTCATCTTACCTTAAACGAACGGACAGGGTCTGGATTTGTTTCTCAAGACCTTTACATTCATGGGTTCTTCAGTGCCTCCATTAAGTTGCCAACTGATTATACTGCCGGAATTGTGGTCGCCTTTTATATGTCGAATGCTGACATGTTCCCCAAGAACCATGACGAAATCGATTTCGAGTTTCTGGGGAATATAAGAGGCAAAGAATGGAGGGTTCAGACCAACGTTTATGGCAATGGAAGCACTGATACTGGGAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGAGGATTACCACCAGTACAGTATTCTCTGGACTGACTCTCATATCATATTCTCTGTTGACAATATTCCCATTAGAGTGGTTAAGAAATCAGAGGCGATGGGTGGTGACTATCCCTCGAAGCCAATGTCATTGTATGCTACAATATGGGATGGATCTGATTGGGCTACCAATGGAGGCAAATACAGAGTCAACTACAAGTATGCTCCATTCAAGGCCGAGTTCTCTGACCTTGTTCTACATGGCTGTGCAGTTGATCCAATTGAACAGGAAGAGGCAGATGACATACTCCTATTGCTACGACAGAATACGATACAAGGTTGCTCCACCAGAGTGTGTGATCAATCCCCAAGAAGCTGA

Protein Analysis

269

Amino Acids

30.4

Weight (kDa)

5.03

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 34 - 216 3.6e-59 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclI AACGTT 1 cut(s) 384
AclWI GGATC 3 cut(s) 437, 610, 698
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 214
AfaI GTAC 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 2 cut(s) 661, 713
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 2 cut(s) 115, 804
AluI AGCT 2 cut(s) 115, 804
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 3 cut(s) 437, 610, 698
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 1 cut(s) 663
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 4 cut(s) 560, 592, 621, 653
AsuHPI GGTGA 1 cut(s) 566
BarI GAAGNNNNNNTAC 2 cut(s) 391, 423
BbvCI CCTCAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 95, 541, 593
BceAI ACGGC 1 cut(s) 38
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 330
Bse1I ACTGG 2 cut(s) 415, 463
Bse3DI GCAATG 1 cut(s) 400
BseCI ATCGAT 1 cut(s) 330
BseGI GGATG 1 cut(s) 604
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 81, 157, 441
BseNI ACTGG 2 cut(s) 415, 463
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 1 cut(s) 665
BshVI ATCGAT 1 cut(s) 330
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 137, 161
BsmAI GTCTC 1 cut(s) 64
BsmFI GGGAC 2 cut(s) 137, 161
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 1 cut(s) 665
Bsp143I GATC 4 cut(s) 442, 602, 703, 787
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 3 cut(s) 80, 156, 442
BspDI ATCGAT 1 cut(s) 330
BspPI GGATC 3 cut(s) 437, 610, 698
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 2 cut(s) 415, 463
BssMI GATC 4 cut(s) 442, 602, 703, 787
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 414, 714
BstDEI CTNAG 3 cut(s) 67, 143, 450
BstF5I GGATG 1 cut(s) 604
BstKTI GATC 4 cut(s) 445, 605, 706, 790
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 4 cut(s) 442, 602, 703, 787
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 602
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 1 cut(s) 602
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 1 cut(s) 665
BsuTUI ATCGAT 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 238, 402
CaiI CAGNNNCTG 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 330
Csp6I GTAC 1 cut(s) 466
CviAII CATG 4 cut(s) 221, 304, 320, 689
CviJI RGCY 8 cut(s) 53, 71, 115, 571, 614, 665, 693, 804
CviKI_1 RGCY 8 cut(s) 53, 71, 115, 571, 614, 665, 693, 804
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 67, 143, 450
DpnI GATC 4 cut(s) 444, 604, 705, 789
DpnII GATC 4 cut(s) 442, 602, 703, 787
Eam1104I CTCTTC 2 cut(s) 414, 714
EarI CTCTTC 2 cut(s) 414, 714
Eco57I CTGAAG 1 cut(s) 214
FaeI CATG 4 cut(s) 224, 307, 323, 692
FaqI GGGAC 2 cut(s) 137, 161
FatI CATG 4 cut(s) 220, 303, 319, 688
FbaI TGATCA 1 cut(s) 787
FokI GGATG 1 cut(s) 611
HaeIII GGCC 1 cut(s) 665
HapII CCGG 1 cut(s) 267
Hin1II CATG 4 cut(s) 224, 307, 323, 692
HincII GTYRAC 2 cut(s) 508, 640
HindII GTYRAC 2 cut(s) 508, 640
HinfI GANTC 3 cut(s) 139, 485, 636
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 2 cut(s) 508, 640
Hpy188I TCNGA 6 cut(s) 135, 378, 451, 541, 607, 676
Hpy188III TCNNGA 3 cut(s) 192, 206, 478
Hpy8I GTNNAC 2 cut(s) 508, 640
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 3 cut(s) 67, 143, 450
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 4 cut(s) 224, 307, 323, 692
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 4 cut(s) 442, 602, 703, 787
LmnI GCTCC 2 cut(s) 658, 776
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 5, 554
MalI GATC 4 cut(s) 444, 604, 705, 789
MboI GATC 4 cut(s) 442, 602, 703, 787
MboII GAAGA 3 cut(s) 220, 431, 731
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 1 cut(s) 602
MluCI AATT 4 cut(s) 76, 84, 270, 708
MlyI GAGTC 2 cut(s) 479, 645
MnlI CCTC 9 cut(s) 76, 247, 350, 363, 445, 535, 574, 617, 715
MseI TTAA 3 cut(s) 173, 243, 531
MslI CAYNNNNRTG 3 cut(s) 524, 693, 779
MspI CCGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 399
NdeII GATC 4 cut(s) 442, 602, 703, 787
NlaIII CATG 4 cut(s) 224, 307, 323, 692
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 554
NspI RCATGY 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 779
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 139
PflFI GACNNNGTC 1 cut(s) 187
PleI GAGTC 2 cut(s) 479, 644
PpsI GAGTC 2 cut(s) 479, 644
PscI ACATGT 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 384
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 602
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 3 cut(s) 524, 693, 779
SaqAI TTAA 3 cut(s) 173, 243, 531
Sau3AI GATC 4 cut(s) 442, 602, 703, 787
SchI GAGTC 2 cut(s) 479, 645
SetI ASST 8 cut(s) 68, 117, 173, 213, 387, 681, 769, 806
SmiMI CAYNNNNRTG 3 cut(s) 524, 693, 779
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 4 cut(s) 76, 84, 270, 708
SsiI CCGC 1 cut(s) 25
SspI AATATT 1 cut(s) 514
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 293, 330, 336, 566
TasI AATT 4 cut(s) 76, 84, 270, 708
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 3 cut(s) 173, 243, 531
Tru9I TTAA 3 cut(s) 173, 243, 531
TscAI CASTG 2 cut(s) 238, 409
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 2 cut(s) 152, 209
TspGWI ACGGA 2 cut(s) 148, 196
TspRI CASTG 2 cut(s) 238, 409
Tth111I GACNNNGTC 1 cut(s) 187
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.