Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

31419001 .. 31422072

Gene Structure 3072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGTTACTACTTGGTTGCTTTGGTTGTTCTTGTAGCAGTTGTGTCTGCCTCAGCCAAAACTCTACCAATCATGTCCTTTGATGAAGGATACAACAAGCTCTTTGGGGACGACAATCTGATGATTCTTAAGGACGGGAAATCCGTTCATCTTACGTTAGACGAACGGACAGGGTCTGGATTTGTTTCTCAAGACCTTTACATTCATGGGTTCTTCAGTGCCTCTATTAAGTTACCAACTGATTATACTGCCGGAGTTGTTGTCGCCTTTTATATGTCGAATTCTGACATGTTCCCCAAGAACCATGACGAAATCGATTTCGAGTTTCTGGGGAATATAAGAGGGAAAGAGTGGAGGGTTCAGACCAACGTTTATGGCAATGGAAGCACTGAAACTGGGAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGAGGATTACCACCAGTACAGTATTCTCTGGACTGACTCTCAAATCATATTCTATGTTGACAATATTCCCATTAGAGTGGTTAAGAAATCAGAGTCGATGGGTGGTGATTATCCCTCGAAGCCAATGTCATTGTATGCTACAATATGGGATGGATCTGGTTGGGCTACCGATGGAGGCAAATACAGAGTCAACTACAAGTATGCACCATTCAGGGCCGAGTTCTCTGACCTTGTTCTGCATGGCTGTGCAGTTGATCCAATTGAACAGGTATCAAAGAAATGTGATAAAACCCAAGGTTCTGAATATATCCCTACCGGTGTTACCCGCCTACAAAGAATGAGAATGGAGAGTTTCAGGAAGAGGCAGATGACATACTCCTATTGCTACGACAGAATAAGATACAAGGTAGCTCCACCAGAGTGTGTGATCACTCCCCAAGAAGCTGAAAGACTCCGTGTGTTTGACCCGGTTACATTCGGGCATGGACACCGTCGTCAACGAAAACATCACCACAGGAGCAGCAGCAGAGCAAGCGTAGCAGACACTTCTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

331

Amino Acids

37.77

Weight (kDa)

7.15

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	29 - 211	2.7e-59	Glycosyl hydrolases family 16
XET_C	PF06955	251 - 286	5.1e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	927
AciI	CCGC	1 cut(s)	760
AclI	AACGTT	1 cut(s)	369
AclWI	GGATC	3 cut(s)	422, 595, 683
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	452
AflII	CTTAAG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	288
AgeI	ACCGGT	1 cut(s)	749
AgsI	TTSAA	1 cut(s)	698
AleI	CACNNNNGTG	1 cut(s)	853
AluBI	AGCT	3 cut(s)	100, 845, 878
AluI	AGCT	3 cut(s)	100, 845, 878
AlwI	GGATC	3 cut(s)	422, 595, 683
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	648
ApeKI	GCWGC	2 cut(s)	954, 957
ApoI	RAATTY	1 cut(s)	280
ArsI	GACNNNNNNTTYG	4 cut(s)	545, 577, 606, 638
AsiGI	ACCGGT	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	648
AsuC2I	CCSGG	1 cut(s)	902
AsuHPI	GGTGA	2 cut(s)	551, 935
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	966, 969
BccI	CCATC	3 cut(s)	526, 578, 599
BciVI	GTATCC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	861
BcnI	CCSGG	1 cut(s)	902
BfrI	CTTAAG	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	955, 958
BlsI	GCNGC	2 cut(s)	956, 959
Bme1390I	CCNGG	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	902
BmrI	ACTGGG	1 cut(s)	405
BmuI	ACTGGG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	902
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	727
BsaWI	WCCGGW	1 cut(s)	749
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	400, 448
Bse3DI	GCAATG	1 cut(s)	385
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	66, 426
BseNI	ACTGG	2 cut(s)	400, 448
BseXI	GCAGC	2 cut(s)	966, 969
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	1 cut(s)	650
BshTI	ACCGGT	1 cut(s)	749
BshVI	ATCGAT	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	252, 750, 902
BslFI	GGGAC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	650
Bsp143I	GATC	4 cut(s)	427, 587, 688, 861
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	2 cut(s)	65, 427
BspDI	ATCGAT	1 cut(s)	315
BspPI	GGATC	3 cut(s)	422, 595, 683
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	749
BsrI	ACTGG	2 cut(s)	400, 448
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	4 cut(s)	427, 587, 688, 861
BssT1I	CCWWGG	1 cut(s)	727
Bst4CI	ACNGT	2 cut(s)	455, 926
Bst6I	CTCTTC	2 cut(s)	399, 788
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	967
BstDEI	CTNAG	2 cut(s)	52, 435
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	4 cut(s)	430, 590, 691, 864
BstMBI	GATC	4 cut(s)	427, 587, 688, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 966, 971
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	900
BstV1I	GCAGC	2 cut(s)	966, 969
BstX2I	RGATCY	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	650
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	2 cut(s)	223, 387
Cac8I	GCNNGC	1 cut(s)	967
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	1 cut(s)	648
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	749
CviAII	CATG	6 cut(s)	73, 206, 289, 305, 674, 917
CviJI	RGCY	8 cut(s)	56, 100, 556, 599, 650, 678, 845, 878
CviKI_1	RGCY	8 cut(s)	56, 100, 556, 599, 650, 678, 845, 878
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	52, 435
DpnI	GATC	4 cut(s)	429, 589, 690, 863
DpnII	GATC	4 cut(s)	427, 587, 688, 861
DrdI	GACNNNNNNGTC	1 cut(s)	927
DseDI	GACNNNNNNGTC	1 cut(s)	927
Eam1104I	CTCTTC	2 cut(s)	399, 788
EarI	CTCTTC	2 cut(s)	399, 788
Eco130I	CCWWGG	1 cut(s)	727
Eco57I	CTGAAG	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	6 cut(s)	76, 209, 292, 308, 677, 920
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	6 cut(s)	72, 205, 288, 304, 673, 916
FauI	CCCGC	1 cut(s)	767
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	2 cut(s)	955, 958
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	955, 958
GluI	GCNGC	2 cut(s)	955, 958
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	3 cut(s)	252, 750, 902
Hin1II	CATG	6 cut(s)	76, 209, 292, 308, 677, 920
HincII	GTYRAC	3 cut(s)	493, 625, 932
HindII	GTYRAC	3 cut(s)	493, 625, 932
HinfI	GANTC	5 cut(s)	124, 470, 527, 621, 885
HpaII	CCGG	3 cut(s)	252, 750, 902
HphI	GGTGA	2 cut(s)	551, 935
Hpy166II	GTNNAC	3 cut(s)	493, 625, 932
Hpy188I	TCNGA	7 cut(s)	120, 286, 363, 436, 526, 661, 736
Hpy188III	TCNNGA	4 cut(s)	177, 191, 463, 790
Hpy8I	GTNNAC	3 cut(s)	493, 625, 932
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	2 cut(s)	80, 441
HpyCH4III	ACNGT	2 cut(s)	455, 926
HpyCH4IV	ACGT	2 cut(s)	155, 369
HpyCH4V	TGCA	3 cut(s)	638, 673, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 966, 971
HpyF3I	CTNAG	2 cut(s)	52, 435
HpySE526I	ACGT	2 cut(s)	155, 369
Hsp92II	CATG	6 cut(s)	76, 209, 292, 308, 677, 920
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	4 cut(s)	427, 587, 688, 861
LmnI	GCTCC	2 cut(s)	850, 951
Lsp1109I	GCAGC	2 cut(s)	966, 969
MaeII	ACGT	2 cut(s)	155, 369
MaeIII	GTNAC	4 cut(s)	5, 231, 754, 904
MalI	GATC	4 cut(s)	429, 589, 690, 863
MboI	GATC	4 cut(s)	427, 587, 688, 861
MboII	GAAGA	4 cut(s)	205, 416, 805, 975
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	587
MluCI	AATT	2 cut(s)	280, 693
MlyI	GAGTC	4 cut(s)	464, 536, 630, 879
MnlI	CCTC	8 cut(s)	61, 232, 335, 348, 430, 559, 602, 789
MseI	TTAA	3 cut(s)	129, 228, 516
MslI	CAYNNNNRTG	3 cut(s)	509, 678, 853
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	3 cut(s)	252, 750, 902
MspR9I	CCNGG	1 cut(s)	902
MunI	CAATTG	1 cut(s)	693
MwoI	GCNNNNNNNGC	3 cut(s)	384, 966, 971
NciI	CCSGG	1 cut(s)	902
NdeII	GATC	4 cut(s)	427, 587, 688, 861
NlaIII	CATG	6 cut(s)	76, 209, 292, 308, 677, 920
NmeAIII	GCCGAG	1 cut(s)	676
NspI	RCATGY	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	853
PciI	ACATGT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	2 cut(s)	172, 924
PinAI	ACCGGT	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	956, 959
PleI	GAGTC	4 cut(s)	464, 535, 629, 879
PpsI	GAGTC	4 cut(s)	464, 535, 629, 879
PscI	ACATGT	1 cut(s)	288
Psp1406I	AACGTT	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	587
PsyI	GACNNNGTC	2 cut(s)	172, 924
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	3 cut(s)	509, 678, 853
SaqAI	TTAA	3 cut(s)	129, 228, 516
SatI	GCNGC	2 cut(s)	955, 958
Sau3AI	GATC	4 cut(s)	427, 587, 688, 861
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	4 cut(s)	464, 536, 630, 879
ScrFI	CCNGG	1 cut(s)	902
SmiMI	CAYNNNNRTG	3 cut(s)	509, 678, 853
SmlI	CTYRAG	2 cut(s)	128, 189
SmoI	CTYRAG	2 cut(s)	128, 189
Sse9I	AATT	2 cut(s)	280, 693
SsiI	CCGC	1 cut(s)	760
SspI	AATATT	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	900
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	455, 926
TaiI	ACGT	2 cut(s)	158, 372
TaqI	TCGA	5 cut(s)	278, 315, 321, 530, 551
TasI	AATT	2 cut(s)	280, 693
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	129, 228, 516
Tru9I	TTAA	3 cut(s)	129, 228, 516
TscAI	CASTG	2 cut(s)	223, 394
TseI	GCWGC	2 cut(s)	954, 957
TspDTI	ATGAA	3 cut(s)	99, 137, 194
TspGWI	ACGGA	3 cut(s)	133, 181, 878
TspRI	CASTG	2 cut(s)	223, 394
Tth111I	GACNNNGTC	2 cut(s)	172, 924
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.