Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010284.1

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

76939 .. 79890

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010284.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgattctcagggacgggaaatccgttcatcttacgttaaacgaacggacagggtctggatttgtttctcaagacctttacattcatgggttcttcagtgcctccattaagttgccaactgattatactgctggaattgtggtcgccttttatatgtcgaatgctgacatgttccccaagaaccatgacgaaatcgatttcgagtttctgggtaatataagaggcaaagaatggagggttcagaccaacgtttatggcaatggaagcactgatactgggagagaagagagatacaatctctggtttgatccttctgaggatttccaccagtacagtattctctggactgactctcatatcatattctatgttgacaatattcccattagagtggttaagaaatcagaggggatgggtggtgactatccctcgaagccaatgtcattgtatgctacaatatgggatggatccgattgggctaccaatggaggcaaatacagagtcaactacaagtatgctccattcaaggctgagttctctgaccttgttctacatggctgtgcagttgatccaattgaacaggtatcaaagaaatgtgataaaacccaaggttctgaatatatccctaccggtgttacgcgcctacaaagaatgaggatggagagtttcaggaagaggcagatgacatactcctattgctacgacagaatacgatacaaggttgctccaccagagtgtgtgatcaatccccaagaagctgaaagactccgcgtgtttgaccccgttacattcgggcacgggcaccaccgtcaacgaaaacatcaccgcaggagcagcagcagagcaagcctagcggataccacttctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

290

Amino Acids

33.51

Weight (kDa)

8.52

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	801
AccII	CGCG	2 cut(s)	640, 771
AciI	CCGC	3 cut(s)	769, 826, 854
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	4 cut(s)	302, 462, 475, 563
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	526, 578
AleI	CACNNNNGTG	1 cut(s)	733
AluBI	AGCT	1 cut(s)	758
AluI	AGCT	1 cut(s)	758
AlwI	GGATC	4 cut(s)	302, 462, 475, 563
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	834, 837
ArsI	GACNNNNNNTTYG	4 cut(s)	425, 457, 486, 518
AsiGI	ACCGGT	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	642
AsuHPI	GGTGA	2 cut(s)	431, 815
BaeGI	GKGCMC	2 cut(s)	798, 804
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	801
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbvI	GCAGC	2 cut(s)	846, 849
BccI	CCATC	3 cut(s)	406, 458, 652
BciVI	GTATCC	1 cut(s)	850
BclI	TGATCA	1 cut(s)	741
BfaI	CTAG	1 cut(s)	851
BfuI	GTATCC	1 cut(s)	850
BisI	GCNGC	2 cut(s)	835, 838
BlsI	GCNGC	2 cut(s)	836, 839
BmiI	GGNNCC	2 cut(s)	469, 803
BmrI	ACTGGG	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	54
Bsa29I	ATCGAT	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	607
BsaWI	WCCGGW	1 cut(s)	629
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	280, 328
Bse3DI	GCAATG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	3 cut(s)	417, 469, 663
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	22, 306, 522
BseNI	ACTGG	2 cut(s)	280, 328
BseSI	GKGCMC	2 cut(s)	798, 804
BseXI	GCAGC	2 cut(s)	846, 849
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	2 cut(s)	640, 771
BshNI	GGYRCC	1 cut(s)	801
BshTI	ACCGGT	1 cut(s)	629
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	798, 804
Bsp143I	GATC	4 cut(s)	307, 467, 568, 741
BspACI	CCGC	3 cut(s)	769, 826, 854
BspCNI	CTCAG	3 cut(s)	21, 307, 523
BspDI	ATCGAT	1 cut(s)	195
BspFNI	CGCG	2 cut(s)	640, 771
BspLI	GGNNCC	2 cut(s)	469, 803
BspPI	GGATC	4 cut(s)	302, 462, 475, 563
BspT107I	GGYRCC	1 cut(s)	801
BsrDI	GCAATG	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	280, 328
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	4 cut(s)	307, 467, 568, 741
BssT1I	CCWWGG	1 cut(s)	607
Bst4CI	ACNGT	2 cut(s)	335, 809
Bst6I	CTCTTC	2 cut(s)	279, 668
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	3 cut(s)	8, 315, 531
BstF5I	GGATG	3 cut(s)	417, 469, 663
BstFNI	CGCG	2 cut(s)	640, 771
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	4 cut(s)	310, 470, 571, 744
BstMBI	GATC	4 cut(s)	307, 467, 568, 741
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 834, 846, 851
BstNSI	RCATGY	1 cut(s)	172
BstSLI	GKGCMC	2 cut(s)	798, 804
BstUI	CGCG	2 cut(s)	640, 771
BstV1I	GCAGC	2 cut(s)	846, 849
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	467
Bsu15I	ATCGAT	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	850
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	417, 469, 663
BtsIMutI	CAGTG	2 cut(s)	103, 267
Cac8I	GCNNGC	1 cut(s)	847
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	642
Cfr10I	RCCGGY	1 cut(s)	629
ClaI	ATCGAT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	629
CviAII	CATG	4 cut(s)	86, 169, 185, 554
CviJI	RGCY	6 cut(s)	436, 479, 530, 558, 758, 849
CviKI_1	RGCY	6 cut(s)	436, 479, 530, 558, 758, 849
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	8, 315, 531
DpnI	GATC	4 cut(s)	309, 469, 570, 743
DpnII	GATC	4 cut(s)	307, 467, 568, 741
Eam1104I	CTCTTC	2 cut(s)	279, 668
EarI	CTCTTC	2 cut(s)	279, 668
Eco130I	CCWWGG	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	4 cut(s)	89, 172, 188, 557
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	85, 168, 184, 553
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	2 cut(s)	835, 838
FokI	GGATG	3 cut(s)	424, 476, 670
Fsp4HI	GCNGC	2 cut(s)	835, 838
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	2 cut(s)	835, 838
HapII	CCGG	1 cut(s)	630
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	4 cut(s)	89, 172, 188, 557
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HincII	GTYRAC	3 cut(s)	373, 505, 812
HindII	GTYRAC	3 cut(s)	373, 505, 812
HinfI	GANTC	4 cut(s)	4, 350, 501, 765
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	2 cut(s)	431, 815
Hpy166II	GTNNAC	3 cut(s)	373, 505, 812
Hpy188I	TCNGA	6 cut(s)	243, 316, 406, 472, 541, 616
Hpy188III	TCNNGA	4 cut(s)	57, 71, 343, 670
Hpy8I	GTNNAC	3 cut(s)	373, 505, 812
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	2 cut(s)	335, 809
HpyCH4IV	ACGT	2 cut(s)	35, 249
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 834, 846, 851
HpyF3I	CTNAG	3 cut(s)	8, 315, 531
HpySE526I	ACGT	2 cut(s)	35, 249
Hsp92II	CATG	4 cut(s)	89, 172, 188, 557
HspAI	GCGC	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	307, 467, 568, 741
LmnI	GCTCC	3 cut(s)	523, 730, 831
Lsp1109I	GCAGC	2 cut(s)	846, 849
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	2 cut(s)	35, 249
MaeIII	GTNAC	3 cut(s)	419, 634, 784
MalI	GATC	4 cut(s)	309, 469, 570, 743
MboI	GATC	4 cut(s)	307, 467, 568, 741
MboII	GAAGA	3 cut(s)	85, 296, 685
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	798, 804
MluCI	AATT	2 cut(s)	135, 573
MlyI	GAGTC	3 cut(s)	344, 510, 759
MnlI	CCTC	9 cut(s)	112, 215, 228, 310, 400, 439, 482, 648, 669
MseI	TTAA	3 cut(s)	38, 108, 396
MslI	CAYNNNNRTG	3 cut(s)	389, 558, 733
MspI	CCGG	1 cut(s)	630
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	2 cut(s)	640, 771
MwoI	GCNNNNNNNGC	4 cut(s)	264, 834, 846, 851
NdeII	GATC	4 cut(s)	307, 467, 568, 741
NlaIII	CATG	4 cut(s)	89, 172, 188, 557
NlaIV	GGNNCC	2 cut(s)	469, 803
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	733
PciI	ACATGT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	629
PkrI	GCNGC	2 cut(s)	836, 839
PleI	GAGTC	3 cut(s)	344, 509, 759
PpsI	GAGTC	3 cut(s)	344, 509, 759
PscI	ACATGT	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	469, 803
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	467
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	3 cut(s)	389, 558, 733
SaqAI	TTAA	3 cut(s)	38, 108, 396
SatI	GCNGC	2 cut(s)	835, 838
Sau3AI	GATC	4 cut(s)	307, 467, 568, 741
SchI	GAGTC	3 cut(s)	344, 510, 759
SduI	GDGCHC	2 cut(s)	798, 804
SetI	ASST	8 cut(s)	38, 78, 252, 546, 585, 613, 723, 760
SmiMI	CAYNNNNRTG	3 cut(s)	389, 558, 733
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	135, 573
SsiI	CCGC	3 cut(s)	769, 826, 854
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	851
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	335, 809
TaiI	ACGT	2 cut(s)	38, 252
TaqI	TCGA	4 cut(s)	158, 195, 201, 431
TasI	AATT	2 cut(s)	135, 573
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	38, 108, 396
Tru9I	TTAA	3 cut(s)	38, 108, 396
TscAI	CASTG	2 cut(s)	103, 274
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	834, 837
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	17, 74
TspGWI	ACGGA	2 cut(s)	13, 61
TspRI	CASTG	2 cut(s)	103, 274
Tth111I	GACNNNGTC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.