Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

33546566 .. 33549085

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTCCCCAAGAACCATGATGAAATCGATTTCGAGTTTCTGGGTAATATAAGAGGCAAAGAATGGAGGGTTCAGACCAACGTTTATGGCAATGGAAGCACTGATACTGGGAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGAGGATTACCACCAGTACAGTATTCTCTGGACTGACTCTCATATCATATTCTATGTTGACAATATTCCCATTAGAGTGGTTAAGAAATCGGAGGCGATGGGTGGTGATTATCCCTCGAAGCCAATGTCATTGTATGCTACAATATGGGATGGATCCGATTGGGCCACCAATGGAGGCAAATACAGAGTCAACTACAAGTATGCTCCATTCAAGGCCGAGTTCTCTGACCTTGTTCTACATGGCTGTGCAGTTGATCCAATTGAACAGGTATCAAAGAAATGTGATAAAACCCAAGGTTCTGAATATATCCCTACCGGTGTTACGCGCCTACAAAGAATGAGGATGGAGAGTTTCAGGAAGAGGCAGATGACATACTCATATTGCTACGACAGAATACGATACAAGGTTGCTCCACCAGAGTGTGTGATCAATCCCCAAGAAGCTGAAAGACTCCGCGTGTTTGACCCCGTTACATTCGGGCACGGGCACCACCGTCAACGAAAACATCACCGCAGGAGCAGCAGCAGAGCAAGCCTAGCGGATACAACTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

234

Amino Acids

27.4

Weight (kDa)

8.76

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	4 - 115	1.4e-42	Glycosyl hydrolases family 16
XET_C	PF06955	155 - 190	3.3e-12	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	633
AccII	CGCG	2 cut(s)	472, 603
AciI	CCGC	3 cut(s)	601, 658, 686
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	4 cut(s)	134, 294, 307, 395
AfaI	GTAC	1 cut(s)	164
AgeI	ACCGGT	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	358, 410
AleI	CACNNNNGTG	1 cut(s)	565
AluBI	AGCT	1 cut(s)	590
AluI	AGCT	1 cut(s)	590
AlwI	GGATC	4 cut(s)	134, 294, 307, 395
AoxI	GGCC	2 cut(s)	309, 360
ApeKI	GCWGC	2 cut(s)	666, 669
ArsI	GACNNNNNNTTYG	4 cut(s)	257, 289, 318, 350
AsiGI	ACCGGT	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	263, 647
BaeGI	GKGCMC	2 cut(s)	630, 636
BamHI	GGATCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
BbvI	GCAGC	2 cut(s)	678, 681
BccI	CCATC	3 cut(s)	238, 290, 484
BciVI	GTATCC	1 cut(s)	682
BclI	TGATCA	1 cut(s)	573
BfaI	CTAG	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	2 cut(s)	667, 670
BlsI	GCNGC	2 cut(s)	668, 671
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	301, 635
BmrI	ACTGGG	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	112, 160
Bse3DI	GCAATG	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	301, 495
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	112, 160
BseSI	GKGCMC	2 cut(s)	630, 636
BseXI	GCAGC	2 cut(s)	678, 681
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	472, 603
BshFI	GGCC	2 cut(s)	311, 362
BshNI	GGYRCC	1 cut(s)	633
BshTI	ACCGGT	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	462
BsnI	GGCC	2 cut(s)	311, 362
Bsp1286I	GDGCHC	2 cut(s)	630, 636
Bsp143I	GATC	4 cut(s)	139, 299, 400, 573
BspACI	CCGC	3 cut(s)	601, 658, 686
BspANI	GGCC	2 cut(s)	311, 362
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	2 cut(s)	472, 603
BspLI	GGNNCC	2 cut(s)	301, 635
BspPI	GGATC	4 cut(s)	134, 294, 307, 395
BspT107I	GGYRCC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	112, 160
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	4 cut(s)	139, 299, 400, 573
BssT1I	CCWWGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	167, 641
Bst6I	CTCTTC	2 cut(s)	111, 500
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	301, 495
BstFNI	CGCG	2 cut(s)	472, 603
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	4 cut(s)	142, 302, 403, 576
BstMBI	GATC	4 cut(s)	139, 299, 400, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 666, 678, 683
BstSLI	GKGCMC	2 cut(s)	630, 636
BstUI	CGCG	2 cut(s)	472, 603
BstV1I	GCAGC	2 cut(s)	678, 681
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	311, 362
BsuTUI	ATCGAT	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	301, 495
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	679
CfoI	GCGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	309
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	163
CspAI	ACCGGT	1 cut(s)	461
CviAII	CATG	2 cut(s)	17, 386
CviJI	RGCY	6 cut(s)	268, 311, 362, 390, 590, 681
CviKI_1	RGCY	6 cut(s)	268, 311, 362, 390, 590, 681
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	4 cut(s)	141, 301, 402, 575
DpnII	GATC	4 cut(s)	139, 299, 400, 573
Eam1104I	CTCTTC	2 cut(s)	111, 500
EarI	CTCTTC	2 cut(s)	111, 500
Eco130I	CCWWGG	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	2 cut(s)	20, 389
FatI	CATG	2 cut(s)	16, 385
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	667, 670
FokI	GGATG	2 cut(s)	308, 502
Fsp4HI	GCNGC	2 cut(s)	667, 670
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	2 cut(s)	667, 670
HaeIII	GGCC	2 cut(s)	311, 362
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	20, 389
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	3 cut(s)	205, 337, 644
HindII	GTYRAC	3 cut(s)	205, 337, 644
HinfI	GANTC	3 cut(s)	182, 333, 597
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	2 cut(s)	263, 647
Hpy166II	GTNNAC	3 cut(s)	205, 337, 644
Hpy188I	TCNGA	6 cut(s)	75, 148, 238, 304, 373, 448
Hpy188III	TCNNGA	2 cut(s)	175, 502
Hpy8I	GTNNAC	3 cut(s)	205, 337, 644
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	167, 641
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 666, 678, 683
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	20, 389
HspAI	GCGC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	139, 299, 400, 573
LmnI	GCTCC	3 cut(s)	355, 562, 663
Lsp1109I	GCAGC	2 cut(s)	678, 681
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	466, 616
MalI	GATC	4 cut(s)	141, 301, 402, 575
MboI	GATC	4 cut(s)	139, 299, 400, 573
MboII	GAAGA	2 cut(s)	128, 517
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	630, 636
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	3 cut(s)	176, 342, 591
MnlI	CCTC	8 cut(s)	47, 60, 142, 232, 271, 314, 480, 501
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	3 cut(s)	221, 390, 565
MspI	CCGG	1 cut(s)	462
MunI	CAATTG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	472, 603
MwoI	GCNNNNNNNGC	4 cut(s)	96, 666, 678, 683
NdeII	GATC	4 cut(s)	139, 299, 400, 573
NlaIII	CATG	2 cut(s)	20, 389
NlaIV	GGNNCC	2 cut(s)	301, 635
NmeAIII	GCCGAG	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	565
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	668, 671
PleI	GAGTC	3 cut(s)	176, 341, 591
PpsI	GAGTC	3 cut(s)	176, 341, 591
Psp1406I	AACGTT	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	301, 635
PspPI	GGNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	3 cut(s)	221, 390, 565
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	667, 670
Sau3AI	GATC	4 cut(s)	139, 299, 400, 573
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	3 cut(s)	176, 342, 591
SduI	GDGCHC	2 cut(s)	630, 636
SetI	ASST	6 cut(s)	84, 378, 417, 445, 555, 592
SmiMI	CAYNNNNRTG	3 cut(s)	221, 390, 565
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	3 cut(s)	601, 658, 686
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	683
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	167, 641
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	27, 33, 263
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	2 cut(s)	666, 669
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	106
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.