Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005670

Physical Location & Seq

Genomic Coordinates Reverse (-)

2479290 .. 2482406

Gene Structure 3117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG016200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGATGCTCATCCGTTTTTTTTGTGTTTTGTGTTAAACAGATGTCGAATGCTGACATGTTCCCCAAGAACCATGACGAAATCGATTTCGAGTTTCTGGGTAATATAAGAGGCAAAGAATGGAGGGTTCAGACCAACGTTTATGGCAATGGAAGCACTGATACTGGGAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGAGGATTACCACCAGTACAGTATTCTCTGGACTGACTCTCATATCATATTCTATGTTGACAATATTCCCATTAGAGTGGTTAAGAAATCGGAGGCGATGGGTGGTGACTATCCCTCGAAGCCAATGTCATTGTATGCTACAATATGGGATGGATCCGATTGGGCTACCAATGGAGACAAATACAGAGTCAACTACAAGTATGCTCCATTCAAGGCCGAGTTCTCTGACCTTGTTCTACATGGCTGTGCAGTTGATCCAATTGAACAGGTATCAAAGAAATGTGATAAAACCCAAGGTTCTGAATATATCCCTACCGGTGTTACGCGCCTACAAAGAATGAGGATGGAGAGTTTCAGGAAGAGGCAGATGACATACTCATATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

196

Amino Acids

22.99

Weight (kDa)

6.43

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	16 - 134	7.7e-43	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14720 AT2G01850
fragaria_vesca	FvH4_4g33070 FvH4_4g33070
malus_domestica	MD13G1016500.v1.1 MD16G1014000.v1.1
prunus_persica	Prupe.1G337000_v2.0.a1
pyrus_communis	pycom13g01420 pycom16g01320
rosa_chinensis	RchiOBHm_Chr3g0486711 RchiOBHm_Chr4g0388421 RchiOBHm_Chr4g0442121
rosa_laevigata	RLG00000006039 RLG00000010057 RLG00000010058
rosa_multiflora	Rmu_sc0002501.1_g000002 Rmu_sc0010284.1_g000014
rosa_roxburghii	Rroxscaffold_4G00314720 Rroxscaffold_5G00383030
rosa_rugosa	Rorug04G0339100
rosa_samantha	Rh3AG276200 Rh4AG390500 Rh4BG016200 Rh4BG404100 Rh4CG023300 Rh4CG419100 Rh4DG397100
rosa_wichuraiana	Rw4G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	529
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	4 cut(s)	191, 351, 364, 452
AfaI	GTAC	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	57
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	415, 467
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	4 cut(s)	191, 351, 364, 452
AoxI	GGCC	1 cut(s)	417
ArsI	GACNNNNNNTTYG	4 cut(s)	314, 346, 375, 407
AsiGI	ACCGGT	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	356
BarI	GAAGNNNNNNTAC	2 cut(s)	145, 177
BccI	CCATC	3 cut(s)	295, 347, 541
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	496
BsaWI	WCCGGW	1 cut(s)	518
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	169, 217
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	3 cut(s)	11, 358, 552
BseJI	GATNNNNATC	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	169, 217
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	419
BshTI	ACCGGT	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	519
BsmAI	GTCTC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	419
Bsp143I	GATC	3 cut(s)	196, 356, 457
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	4 cut(s)	191, 351, 364, 452
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	2 cut(s)	169, 217
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	3 cut(s)	196, 356, 457
BssT1I	CCWWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	168, 557
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	11, 358, 552
BstFNI	CGCG	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	3 cut(s)	199, 359, 460
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	3 cut(s)	196, 356, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	61
BstUI	CGCG	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	419
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	3 cut(s)	11, 358, 552
BtsIMutI	CAGTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	518
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	518
CviAII	CATG	3 cut(s)	58, 74, 443
CviJI	RGCY	4 cut(s)	325, 368, 419, 447
CviKI_1	RGCY	4 cut(s)	325, 368, 419, 447
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	3 cut(s)	198, 358, 459
DpnII	GATC	3 cut(s)	196, 356, 457
Eam1104I	CTCTTC	2 cut(s)	168, 557
EarI	CTCTTC	2 cut(s)	168, 557
Eco130I	CCWWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	3 cut(s)	61, 77, 446
FatI	CATG	3 cut(s)	57, 73, 442
FokI	GGATG	2 cut(s)	365, 559
FspBI	CTAG	1 cut(s)	589
GlaI	GCGC	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	519
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	61, 77, 446
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	2 cut(s)	262, 394
HindII	GTYRAC	2 cut(s)	262, 394
HinfI	GANTC	2 cut(s)	239, 390
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	262, 394
Hpy188I	TCNGA	6 cut(s)	132, 205, 295, 361, 430, 505
Hpy188III	TCNNGA	2 cut(s)	232, 559
Hpy8I	GTNNAC	2 cut(s)	262, 394
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	61, 77, 446
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	196, 356, 457
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	83, 150, 175, 217, 230, 455, 532, 544
MaeI	CTAG	1 cut(s)	589
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	308, 523
MalI	GATC	3 cut(s)	198, 358, 459
MboI	GATC	3 cut(s)	196, 356, 457
MboII	GAAGA	2 cut(s)	185, 574
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	233, 399
MnlI	CCTC	7 cut(s)	104, 117, 199, 289, 328, 537, 558
MseI	TTAA	2 cut(s)	36, 285
MslI	CAYNNNNRTG	2 cut(s)	278, 447
MspI	CCGG	1 cut(s)	519
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	55
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	3 cut(s)	196, 356, 457
NlaIII	CATG	3 cut(s)	61, 77, 446
NlaIV	GGNNCC	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	61
PciI	ACATGT	1 cut(s)	57
PctI	GAATGC	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	518
PleI	GAGTC	2 cut(s)	233, 398
PpsI	GAGTC	2 cut(s)	233, 398
PscI	ACATGT	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	278, 447
SaqAI	TTAA	2 cut(s)	36, 285
Sau3AI	GATC	3 cut(s)	196, 356, 457
SchI	GAGTC	2 cut(s)	233, 399
SetI	ASST	4 cut(s)	141, 435, 474, 502
SmiMI	CAYNNNNRTG	2 cut(s)	278, 447
Sse9I	AATT	1 cut(s)	462
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	47, 84, 90, 320
TasI	AATT	1 cut(s)	462
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	36, 285
Tru9I	TTAA	2 cut(s)	36, 285
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	163
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.