Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Reverse (-)

5084315 .. 5085263

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATGTGAAGAAAGATGAGAACAGTATCTTAGAAAACATGAAACAAGAGATTAATCATAGTCTAAAAGAAGAAGCACAAGAAGAAGAAGAGATTCTAAAGAAGAGAATCTCAAGCCACCCTTTGTATGGGCTTCTTCTTCACTCACATCTCAATTGTTTAAAGGTGTGTTCCGGCGACTTTGACTCACCGGAGATCATGAACACGGCTGATGATCTTGCCCTATCCAAACTCTCTCTCCACCCTGACTCTTCCTCCGAAGCTACCTCTTCAGAACTTGATCAATTCATGGTTCTTTTTTTTTTTTCTCCCTGCCAAAACATATTTACACAACAAAAAACAACTTTTCACGTTCTTTTATTTTTTCCTTTGCAAATTAATTTGACTTTCAAGTATTCTAAGTTTATTTTGCCAAGAAAAAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009954 GO:0010468 GO:0010556 GO:0010557 GO:0010589 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

142

Amino Acids

16.44

Weight (kDa)

5.64

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	33 - 56	7.6e-07	KNOX1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	391
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AseI	ATTAAT	2 cut(s)	54, 378
Asp700I	GAANNNNTTC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 239, 252, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	174, 191
BslI	CCNNNNNNNGG	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	195, 214, 280
BspHI	TCATGA	1 cut(s)	198
BssMI	GATC	3 cut(s)	195, 214, 280
Bst4CI	ACNGT	2 cut(s)	26, 426
Bst6I	CTCTTC	4 cut(s)	84, 98, 256, 274
BstDEI	CTNAG	2 cut(s)	31, 399
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	198, 217, 283
BstMBI	GATC	3 cut(s)	195, 214, 280
BtsCI	GGATG	1 cut(s)	10
CciI	TCATGA	1 cut(s)	198
CviAII	CATG	3 cut(s)	40, 199, 289
CviJI	RGCY	4 cut(s)	117, 133, 209, 263
CviKI_1	RGCY	4 cut(s)	117, 133, 209, 263
DdeI	CTNAG	2 cut(s)	31, 399
DpnI	GATC	3 cut(s)	197, 216, 282
DpnII	GATC	3 cut(s)	195, 214, 280
DraI	TTTAAA	1 cut(s)	162
Eam1104I	CTCTTC	4 cut(s)	84, 98, 256, 274
EarI	CTCTTC	4 cut(s)	84, 98, 256, 274
Eco57I	CTGAAG	1 cut(s)	255
FaeI	CATG	3 cut(s)	43, 202, 292
FaiI	YATR	6 cut(s)	41, 60, 129, 200, 290, 323
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	3 cut(s)	39, 198, 288
FbaI	TGATCA	1 cut(s)	280
FokI	GGATG	1 cut(s)	17
HapII	CCGG	2 cut(s)	174, 191
Hin1II	CATG	3 cut(s)	43, 202, 292
HinfI	GANTC	4 cut(s)	94, 108, 185, 248
HpaII	CCGG	2 cut(s)	174, 191
HphI	GGTGA	1 cut(s)	180
Hpy188I	TCNGA	2 cut(s)	259, 274
Hpy188III	TCNNGA	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	26, 426
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	373
HpyF3I	CTNAG	2 cut(s)	31, 399
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	43, 202, 292
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	195, 214, 280
LpnPI	CCDG	4 cut(s)	187, 204, 258, 325
MaeII	ACGT	1 cut(s)	351
MalI	GATC	3 cut(s)	197, 216, 282
MboI	GATC	3 cut(s)	195, 214, 280
MfeI	CAATTG	1 cut(s)	154
MluCI	AATT	4 cut(s)	154, 284, 375, 379
MlyI	GAGTC	2 cut(s)	179, 242
MnlI	CCTC	2 cut(s)	265, 277
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	3 cut(s)	54, 161, 378
MspI	CCGG	2 cut(s)	174, 191
MunI	CAATTG	1 cut(s)	154
NdeII	GATC	3 cut(s)	195, 214, 280
NlaIII	CATG	3 cut(s)	43, 202, 292
PagI	TCATGA	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	94, 108
PleI	GAGTC	2 cut(s)	179, 242
PpsI	GAGTC	2 cut(s)	179, 242
PshBI	ATTAAT	2 cut(s)	54, 378
SaqAI	TTAA	3 cut(s)	54, 161, 378
Sau3AI	GATC	3 cut(s)	195, 214, 280
SchI	GAGTC	2 cut(s)	179, 242
SetI	ASST	4 cut(s)	168, 265, 269, 354
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	154, 284, 375, 379
TaaI	ACNGT	2 cut(s)	26, 426
TaiI	ACGT	1 cut(s)	354
TasI	AATT	4 cut(s)	154, 284, 375, 379
TfiI	GAWTC	2 cut(s)	94, 108
Tru1I	TTAA	3 cut(s)	54, 161, 378
Tru9I	TTAA	3 cut(s)	54, 161, 378
TspDTI	ATGAA	3 cut(s)	56, 215, 277
VspI	ATTAAT	2 cut(s)	54, 378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.