Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

68010088 .. 68011743

Gene Structure 1656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGCTTTCATGGGTAGTTACAAGGAGAAAGAAAACCAAGAAGAAAATCAAGATGATGATCATCATGAGATCCTCAAAACTAGAATCTCTAGCCATCCTTTATATGGGCTCTTGGTTGAAACTCACCTAGACTGTCTGAAGGTAGGTGGTAATGAAGATGACCTAGAGGAAAGTGATGCCCTCAGGGATTATATGAAGCAGCTTGACAATCACAAGACCAGTACTTTAGGAGAATCAGAGCTCGATCACTTCATGGAAGCATATTGCTTGGCACTTAGGAAGCTGAAGGAAGCAATGGAGGAACCTCACCAAAAGTCCATGACTTTCATAACTAACATGCACCATCAACTCAAGGAGCTAACCGCCACCAGGTCTCATCTTGATGTACCTGAATCACCTGCCAGCTTCCACCACCACCGCCACACTTCTGGTCAGTCTAAAATTGGACCAGCTAAATTGAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

157

Amino Acids

18.02

Weight (kDa)

5.63

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	26 - 50	7.2e-08	KNOX1 domain
KNOX2	PF03791	80 - 122	1e-10	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	1 cut(s)	409
AciI	CCGC	2 cut(s)	366, 421
AclWI	GGATC	1 cut(s)	67
AcuI	CTGAAG	2 cut(s)	161, 308
AfaI	GTAC	2 cut(s)	226, 390
AfiI	CCNNNNNNNGG	2 cut(s)	107, 372
AgsI	TTSAA	2 cut(s)	122, 463
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	6 cut(s)	205, 244, 286, 361, 408, 455
AluI	AGCT	6 cut(s)	205, 244, 286, 361, 408, 455
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	119, 302, 390
AvaII	GGWCC	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	114, 246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	105, 354
BciT130I	CCWGG	1 cut(s)	373
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	4 cut(s)	84, 93, 131, 167
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	338
BsaBI	GATNNNNATC	2 cut(s)	60, 63
BsaI	GGTCTC	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 372
Bse1I	ACTGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	2 cut(s)	60, 63
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	2 cut(s)	60, 63
BseLI	CCNNNNNNNGG	2 cut(s)	107, 372
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	107, 372
BsmAI	GTCTC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	114, 246
Bsp143I	GATC	3 cut(s)	61, 72, 247
BspACI	CCGC	2 cut(s)	366, 421
BspCNI	CTCAG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	61, 72, 247
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	185, 278
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	3 cut(s)	64, 75, 250
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	3 cut(s)	61, 72, 247
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	72
Bsu36I	CCTNAGG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	371
Csp6I	GTAC	2 cut(s)	225, 389
CviAII	CATG	5 cut(s)	13, 68, 256, 322, 340
CviJI	RGCY	9 cut(s)	8, 96, 112, 205, 244, 286, 361, 408, 455
CviKI_1	RGCY	9 cut(s)	8, 96, 112, 205, 244, 286, 361, 408, 455
CviQI	GTAC	2 cut(s)	225, 389
DdeI	CTNAG	2 cut(s)	185, 278
DpnI	GATC	3 cut(s)	63, 74, 249
DpnII	GATC	3 cut(s)	61, 72, 247
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	114, 246
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	161, 308
Eco81I	CCTNAGG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	371
EcoT38I	GRGCYC	2 cut(s)	114, 246
FaeI	CATG	5 cut(s)	16, 71, 259, 325, 343
FatI	CATG	5 cut(s)	12, 67, 255, 321, 339
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	2 cut(s)	114, 246
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	4 cut(s)	84, 93, 131, 167
GluI	GCNGC	1 cut(s)	203
Hin1II	CATG	5 cut(s)	16, 71, 259, 325, 343
HinfI	GANTC	3 cut(s)	87, 236, 395
HphI	GGTGA	3 cut(s)	119, 302, 390
Hpy188I	TCNGA	2 cut(s)	141, 241
Hpy188III	TCNNGA	3 cut(s)	53, 68, 383
HpyAV	CCTTC	2 cut(s)	136, 283
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	185, 278
Hsp92II	CATG	5 cut(s)	16, 71, 259, 325, 343
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 72, 247
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	172, 235, 358, 385, 405, 414, 417, 418, 465
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	169
MabI	ACCWGGT	1 cut(s)	371
MaeI	CTAG	4 cut(s)	84, 93, 131, 167
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	63, 74, 249
MboI	GATC	3 cut(s)	61, 72, 247
MboII	GAAGA	2 cut(s)	56, 170
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	114, 246
MluCI	AATT	2 cut(s)	444, 458
MnlI	CCTC	5 cut(s)	86, 163, 194, 295, 318
MslI	CAYNNNNRTG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	61, 72, 247
NlaIII	CATG	5 cut(s)	16, 71, 259, 325, 343
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	343
PagI	TCATGA	1 cut(s)	67
PaqCI	CACCTGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	87, 236, 395
PkrI	GCNGC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	2 cut(s)	226, 390
RsaNI	GTAC	2 cut(s)	225, 389
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	61, 72, 247
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	2 cut(s)	114, 246
SexAI	ACCWGGT	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	444, 458
SsiI	CCGC	2 cut(s)	366, 421
SspMI	CTAG	4 cut(s)	84, 93, 131, 167
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	444, 458
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	87, 236, 395
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	171, 212, 244, 319
VpaK11BI	GGWCC	1 cut(s)	449
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	4 cut(s)	84, 93, 131, 167
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.