Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Reverse (-)

31606313 .. 31607395

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACGGGGAATAGTGAAACTTCTGTTAGGGTGGTTACTCCTTCAGATGAAAAAGGAGATGGTCATGTTCATGTTGGCGAGGAGGAAGGGGTTCATGATCGAGAGGCGGACAAGGAAGAAGAAGCTCTGAAGAAGATGATATTAGGTCATCCATTATATGGATTATTGCTTGAGAGTCACATCAACTGCCTGAAGGTGTGTTCGGGTGAAAGGGGTGATGAAATTGGTACAACTACAACAAGCACTGATACTACTACTAATGTTACAGAAGATAATGCCAATGTTAAGGCGCTCGAGGCCGCCCTTACCAGTCCTAGTTCCTCCGACCTTGATCAATTCATGGAAGCATACTGCAACTCCCTAAACAATCTCAAAGAAGCCATGGAGAATCCTCTAAAGGAAGCATCATCTTTCATTGATTCAGTGCAAGCTCAACTTGAGGAGCTCACCGGAGACTCCGATGATAGCAAGCAGGGGCCAAATCAGACTGAGTCATCGATCGTCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

171

Amino Acids

18.33

Weight (kDa)

4.35

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	42 - 66	1.2e-06	KNOX1 domain
KNOX2	PF03791	109 - 150	1.8e-12	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	158
AciI	CCGC	2 cut(s)	107, 300
AcuI	CTGAAG	3 cut(s)	27, 149, 212
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	125, 431, 445
AluI	AGCT	3 cut(s)	125, 431, 445
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	297, 476
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	3 cut(s)	218, 227, 439
AvaI	CYCGRG	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	477
BmsI	GCATC	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	191, 458
Bsa29I	ATCGAT	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	503
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	95, 455
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	299, 478
BshVI	ATCGAT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	299, 478
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	97, 331, 498
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	2 cut(s)	107, 300
BspANI	GGCC	2 cut(s)	299, 478
BspCNI	CTCAG	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	97, 331, 498
BssT1I	CCWWGG	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	429, 470
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	3 cut(s)	100, 334, 501
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	3 cut(s)	97, 331, 498
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	299, 478
BsuTUI	ATCGAT	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	243, 429
Cac8I	GCNNGC	2 cut(s)	429, 470
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	5 cut(s)	65, 71, 95, 340, 382
CviJI	RGCY	6 cut(s)	125, 299, 380, 431, 445, 478
CviKI_1	RGCY	6 cut(s)	125, 299, 380, 431, 445, 478
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	3 cut(s)	99, 333, 500
DpnII	GATC	3 cut(s)	97, 331, 498
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	3 cut(s)	27, 149, 212
Eco88I	CYCGRG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	5 cut(s)	68, 74, 98, 343, 385
FaiI	YATR	8 cut(s)	66, 72, 96, 157, 159, 341, 349, 383
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	5 cut(s)	64, 70, 94, 339, 381
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	299, 478
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	5 cut(s)	68, 74, 98, 343, 385
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	5 cut(s)	175, 388, 419, 455, 491
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	3 cut(s)	218, 227, 439
Hpy188I	TCNGA	5 cut(s)	46, 129, 325, 460, 486
Hpy188III	TCNNGA	2 cut(s)	95, 101
HpyAV	CCTTC	3 cut(s)	51, 80, 187
HpyCH4V	TGCA	2 cut(s)	354, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	68, 74, 98, 343, 385
HspAI	GCGC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	97, 331, 498
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	4 cut(s)	203, 322, 458, 463
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	34, 176, 262
MalI	GATC	3 cut(s)	99, 333, 500
MboI	GATC	3 cut(s)	97, 331, 498
MboII	GAAGA	5 cut(s)	128, 131, 142, 145, 281
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	2 cut(s)	222, 335
MlyI	GAGTC	3 cut(s)	184, 449, 500
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	7 cut(s)	73, 76, 97, 289, 331, 402, 433
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	97, 331, 498
NlaIII	CATG	5 cut(s)	68, 74, 98, 343, 385
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	293
PagI	TCATGA	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	388, 419
PflFI	GACNNNGTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	301
Ple19I	CGATCG	1 cut(s)	501
PleI	GAGTC	3 cut(s)	183, 449, 499
PpsI	GAGTC	3 cut(s)	183, 449, 499
Psp124BI	GAGCTC	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	476
PspXI	VCTCGAGB	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	501
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	3 cut(s)	97, 331, 498
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	184, 449, 500
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	6 cut(s)	127, 148, 198, 330, 433, 447
SfaNI	GCATC	1 cut(s)	413
Sfr274I	CTCGAG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	3 cut(s)	170, 293, 437
SmoI	CTYRAG	3 cut(s)	170, 293, 437
Sse9I	AATT	2 cut(s)	222, 335
SsiI	CCGC	2 cut(s)	107, 300
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	381
TaqI	TCGA	3 cut(s)	100, 294, 497
TasI	AATT	2 cut(s)	222, 335
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	388, 419
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	250, 429
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	6 cut(s)	59, 63, 83, 234, 328, 403
TspRI	CASTG	2 cut(s)	250, 429
Tth111I	GACNNNGTC	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.