Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

31655819 .. 31657198

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G335000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGACAACTACAATGGTGATGATGATCAGAATAAGGGTGTTTTTAGGGTGTGCACAGAATCACAATCAGATGAAGGTGATGTTGTTGGTGAGGAGGAGTTGGAGCAGGAAGTTCTAAAAAGGAGGATCTCAGGCCATCCACTGTATGAGCTGTTGATGGAGAATCACATCAACTGTTTGAAGGTGGGTTTGGGTGAAAATATTGGAGAAATTGGAGTCACAAGTACTGAAAATGACAAGCTCAAGGCCGCTGCCATTCCCACTTCTTCAGACCTTGATCAATTCATGGAAGCATACTGCGACGCCCTAAACAAGCTGAAAGAAGCCATGGAGGATCCTATAAAAGAAACGACATCTTTCATCACTGATGTGTATGCTCAACTTGAGGATCTCAGTGCCTCCAAAAAACCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

140

Amino Acids

15.5

Weight (kDa)

4.32

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	4 cut(s)	137, 332, 345, 399
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	154, 244, 319
AluI	AGCT	3 cut(s)	154, 244, 319
Alw21I	GWGCWC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	55
AlwI	GGATC	4 cut(s)	137, 332, 345, 399
AoxI	GGCC	2 cut(s)	136, 249
ApaLI	GTGCAC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	32, 92, 104, 209
BaeGI	GKGCMC	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	147, 154
BclI	TGATCA	2 cut(s)	28, 280
BisI	GCNGC	2 cut(s)	252, 255
BlsI	GCNGC	2 cut(s)	253, 256
BmcAI	AGTACT	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	230, 407
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	147, 409
BseRI	GAGGAG	2 cut(s)	110, 113
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	2 cut(s)	138, 251
BsiHKAI	GWGCWC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	138, 251
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	5 cut(s)	28, 129, 280, 337, 391
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	138, 251
BspCNI	CTCAG	2 cut(s)	146, 408
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	4 cut(s)	137, 332, 345, 399
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	28, 129, 280, 337, 391
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	147, 179
BstACI	GRCGYC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	133, 395
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	5 cut(s)	31, 132, 283, 340, 394
BstMBI	GATC	5 cut(s)	28, 129, 280, 337, 391
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	3 cut(s)	129, 337, 391
BstYI	RGATCY	3 cut(s)	129, 337, 391
BsuRI	GGCC	2 cut(s)	138, 251
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	143, 366, 403
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	289, 331
CviJI	RGCY	6 cut(s)	138, 154, 244, 251, 319, 329
CviKI_1	RGCY	6 cut(s)	138, 154, 244, 251, 319, 329
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	133, 395
DpnI	GATC	5 cut(s)	30, 131, 282, 339, 393
DpnII	GATC	5 cut(s)	28, 129, 280, 337, 391
Eco130I	CCWWGG	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	292, 334
FaiI	YATR	6 cut(s)	150, 290, 298, 332, 344, 378
FatI	CATG	2 cut(s)	288, 330
FbaI	TGATCA	2 cut(s)	28, 280
Fnu4HI	GCNGC	2 cut(s)	252, 255
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	252, 255
GluI	GCNGC	2 cut(s)	252, 255
HaeIII	GGCC	2 cut(s)	138, 251
HgaI	GACGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	292, 334
HinfI	GANTC	3 cut(s)	62, 166, 219
HphI	GGTGA	4 cut(s)	32, 92, 104, 209
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	33, 73, 274
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	71, 178
HpyCH4III	ACNGT	2 cut(s)	147, 179
HpyCH4V	TGCA	1 cut(s)	57
HpyF3I	CTNAG	2 cut(s)	133, 395
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	292, 334
Ksp22I	TGATCA	2 cut(s)	28, 280
Kzo9I	GATC	5 cut(s)	28, 129, 280, 337, 391
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	2 cut(s)	95, 120
Lsp1109I	GCAGC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	5 cut(s)	30, 131, 282, 339, 393
MboI	GATC	5 cut(s)	28, 129, 280, 337, 391
MboII	GAAGA	1 cut(s)	261
MflI	RGATCY	3 cut(s)	129, 337, 391
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	213, 284
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	6 cut(s)	88, 91, 120, 328, 382, 412
MseI	TTAA	1 cut(s)	418
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	28, 129, 280, 337, 391
NlaIII	CATG	2 cut(s)	292, 334
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	62, 166
PkrI	GCNGC	2 cut(s)	253, 256
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	3 cut(s)	129, 337, 391
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	2 cut(s)	252, 255
Sau3AI	GATC	5 cut(s)	28, 129, 280, 337, 391
ScaI	AGTACT	1 cut(s)	229
SchI	GAGTC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	6 cut(s)	82, 156, 189, 246, 279, 321
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	245, 386
SmoI	CTYRAG	2 cut(s)	245, 386
Sse9I	AATT	2 cut(s)	213, 284
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	147, 179
TasI	AATT	2 cut(s)	213, 284
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	62, 166
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TscAI	CASTG	3 cut(s)	150, 373, 403
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	90, 277, 352
TspRI	CASTG	3 cut(s)	150, 373, 403
VneI	GTGCAC	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.