Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

10117099 .. 10119574

Gene Structure 2476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGGCTTTCATGGGTAGTTACAAGGAGAAAGAAGAACAACGAGAAGAAAATCAAGATGATGATCATGAGGAGAACCTCAAAACTAGAATCTCTAGCCATCCTTTATATGGGCTCTTGGTTGAAACTCACCTTGACTGTTTGAAGGTTGGCGGTATTGGAGATGACCTAGAGGAAAGTGATGCCCTCAGGGATTATATGAAGCAGCTTGACAACCACAAGTCCAGTACTTCAGGAGAACCGGAGCTCGATCACTTCATGGAAGCATATTGTTTGGCACTTAGAAAGCTGAAGGAAGCAATGGAGGAACCTCACCGAAAGTCCATGACTTTCATAACTAGCATGCACCATCAACTCAAAGAGCTCACTGCCACCAGGTCTCATCTTGATCTACCTGAATCACCTACCAGCTTCCACCACCGCCGCCCCACTTCTGGTGAAAGAAAACCAGAGATGATCGACTTTCCCAGAAGATCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

161

Amino Acids

18.67

Weight (kDa)

5.43

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	27 - 53	5.2e-08	KNOX1 domain
KNOX2	PF03791	78 - 123	9.2e-12	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 421, 424
AcuI	CTGAAG	2 cut(s)	216, 311
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	110, 434
AgsI	TTSAA	2 cut(s)	125, 145
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	5 cut(s)	208, 247, 289, 364, 411
AluI	AGCT	5 cut(s)	208, 247, 289, 364, 411
Alw21I	GWGCWC	2 cut(s)	249, 366
Alw26I	GTCTC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	205
AsuHPI	GGTGA	4 cut(s)	122, 305, 393, 449
AxyI	CCTNAGG	1 cut(s)	188
BanII	GRGCYC	3 cut(s)	117, 249, 366
Bbv12I	GWGCWC	2 cut(s)	249, 366
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	108, 357
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	5 cut(s)	87, 96, 170, 339, 481
BisI	GCNGC	2 cut(s)	206, 424
BlsI	GCNGC	2 cut(s)	207, 425
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 434
Bse1I	ACTGG	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	110, 434
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	249, 366
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	110, 434
BsmAI	GTCTC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	117, 249, 366
Bsp143I	GATC	5 cut(s)	64, 250, 388, 456, 473
BspACI	CCGC	3 cut(s)	153, 421, 424
BspCNI	CTCAG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	64, 250, 388, 456, 473
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	188, 281
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	5 cut(s)	67, 253, 391, 459, 476
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	5 cut(s)	64, 250, 388, 456, 473
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	344
CciI	TCATGA	1 cut(s)	67
CsiI	ACCWGGT	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	5 cut(s)	13, 68, 259, 325, 343
CviJI	RGCY	8 cut(s)	8, 99, 115, 208, 247, 289, 364, 411
CviKI_1	RGCY	8 cut(s)	8, 99, 115, 208, 247, 289, 364, 411
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	188, 281
DpnI	GATC	5 cut(s)	66, 252, 390, 458, 475
DpnII	GATC	5 cut(s)	64, 250, 388, 456, 473
Ecl136II	GAGCTC	2 cut(s)	247, 364
Eco24I	GRGCYC	3 cut(s)	117, 249, 366
Eco31I	GGTCTC	1 cut(s)	384
Eco53kI	GAGCTC	2 cut(s)	247, 364
Eco57I	CTGAAG	2 cut(s)	216, 311
Eco81I	CCTNAGG	1 cut(s)	188
EcoICRI	GAGCTC	2 cut(s)	247, 364
EcoRII	CCWGG	1 cut(s)	374
EcoT38I	GRGCYC	3 cut(s)	117, 249, 366
FaeI	CATG	5 cut(s)	16, 71, 262, 328, 346
FatI	CATG	5 cut(s)	12, 67, 258, 324, 342
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	206, 424
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	3 cut(s)	117, 249, 366
Fsp4HI	GCNGC	2 cut(s)	206, 424
FspBI	CTAG	5 cut(s)	87, 96, 170, 339, 481
GluI	GCNGC	2 cut(s)	206, 424
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	5 cut(s)	16, 71, 262, 328, 346
HinfI	GANTC	2 cut(s)	90, 398
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	4 cut(s)	122, 305, 393, 449
Hpy188III	TCNNGA	4 cut(s)	56, 68, 234, 386
HpyAV	CCTTC	2 cut(s)	139, 286
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	2 cut(s)	188, 281
Hsp92II	CATG	5 cut(s)	16, 71, 262, 328, 346
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	64, 250, 388, 456, 473
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	172
MabI	ACCWGGT	1 cut(s)	374
MaeI	CTAG	5 cut(s)	87, 96, 170, 339, 481
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	66, 252, 390, 458, 475
MboI	GATC	5 cut(s)	64, 250, 388, 456, 473
MboII	GAAGA	3 cut(s)	47, 59, 483
MhlI	GDGCHC	3 cut(s)	117, 249, 366
MnlI	CCTC	6 cut(s)	64, 89, 166, 197, 298, 321
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
NdeII	GATC	5 cut(s)	64, 250, 388, 456, 473
NlaIII	CATG	5 cut(s)	16, 71, 262, 328, 346
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	90, 398
PkrI	GCNGC	2 cut(s)	207, 425
Psp124BI	GAGCTC	2 cut(s)	249, 366
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	309
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SacI	GAGCTC	2 cut(s)	249, 366
SatI	GCNGC	2 cut(s)	206, 424
Sau3AI	GATC	5 cut(s)	64, 250, 388, 456, 473
ScaI	AGTACT	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	3 cut(s)	117, 249, 366
SexAI	ACCWGGT	1 cut(s)	374
SfaNI	GCATC	1 cut(s)	172
SphI	GCATGC	1 cut(s)	346
SsiI	CCGC	3 cut(s)	153, 421, 424
SspMI	CTAG	5 cut(s)	87, 96, 170, 339, 481
SstI	GAGCTC	2 cut(s)	249, 366
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	249, 459
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	90, 398
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	215, 247, 322
TspRI	CASTG	1 cut(s)	373
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	5 cut(s)	87, 96, 170, 339, 481
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.