Prupe.5G236700_v2.0.a1

Homeobox protein knotted-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0002850
Physical Location & Seq
Forward (+)
17903516 .. 17905317
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G236700.1

Sequence Viewer

Length: 423 bp
ATGGAAGGAGCTTTGAGTAGTTCTACTACTTACAAGGAGAAAGAAAAACAAGAGAATGTTGAAGATCATGAGATCCTCAAAAACAGAATCTCTACCCATCCCTTATATGGGCTGTTGGTTGAAGCTCACTTGGATTGTTTGAAGGTCGGTGGAATTAGTGGTGACCTAGACCTAGAGGGAGATGTTAGCAGAGATATGAAGCAGCTTGACAACAAGTACAAGGCCAGTGAAAATCGACAATCTGACCTCGATCACTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTGAAAGAAGCAATGGAGGAACCGCAGCAAACGTCGATGGCCTTCATAAGTAACATGCACCTGCAACTCAAGGAGCTAACAGGATCTCATCAACCTGAACCGGCCACCTCACTTTCCGGTGAAAGCTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KNOX1 KNOX2

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

4.89

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 357
AciI CCGC 1 cut(s) 311
AclWI GGATC 2 cut(s) 67, 379
AcoI YGGCCR 1 cut(s) 390
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 107, 108
AgsI TTSAA 3 cut(s) 62, 122, 142
AluBI AGCT 6 cut(s) 11, 125, 205, 289, 364, 414
AluI AGCT 6 cut(s) 11, 125, 205, 289, 364, 414
AlwI GGATC 2 cut(s) 67, 379
AoxI GGCC 3 cut(s) 222, 327, 390
ApeKI GCWGC 2 cut(s) 202, 313
AsuHPI GGTGA 2 cut(s) 173, 419
BbvI GCAGC 2 cut(s) 214, 325
BccI CCATC 2 cut(s) 105, 319
BfaI CTAG 2 cut(s) 167, 173
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 2 cut(s) 203, 314
BlsI GCNGC 2 cut(s) 204, 315
BmiI GGNNCC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 108
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 225
Bse3DI GCAATG 1 cut(s) 306
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 107, 108
BseMI GCAATG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 214, 325
BshFI GGCC 3 cut(s) 224, 329, 392
BsiSI CCGG 2 cut(s) 389, 405
BslI CCNNNNNNNGG 2 cut(s) 107, 108
BsnI GGCC 3 cut(s) 224, 329, 392
Bsp143I GATC 4 cut(s) 64, 72, 250, 371
BspACI CCGC 1 cut(s) 311
BspANI GGCC 3 cut(s) 224, 329, 392
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 67, 379
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 1 cut(s) 225
BssAI RCCGGY 1 cut(s) 388
BssMI GATC 4 cut(s) 64, 72, 250, 371
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 4 cut(s) 67, 75, 253, 374
BstMBI GATC 4 cut(s) 64, 72, 250, 371
BstNSI RCATGY 1 cut(s) 346
BstPI GGTNACC 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 214, 325
BstX2I RGATCY 2 cut(s) 72, 371
BstYI RGATCY 2 cut(s) 72, 371
BsuRI GGCC 3 cut(s) 224, 329, 392
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 388
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 68, 259, 343
CviQI GTAC 1 cut(s) 217
DpnI GATC 4 cut(s) 66, 74, 252, 373
DpnII GATC 4 cut(s) 64, 72, 250, 371
EaeI YGGCCR 1 cut(s) 390
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
FaeI CATG 3 cut(s) 71, 262, 346
FaiI YATR 8 cut(s) 69, 106, 108, 197, 260, 268, 335, 344
FatI CATG 3 cut(s) 67, 258, 342
Fnu4HI GCNGC 2 cut(s) 203, 314
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 203, 314
FspBI CTAG 2 cut(s) 167, 173
GluI GCNGC 2 cut(s) 203, 314
HaeIII GGCC 3 cut(s) 224, 329, 392
HapII CCGG 2 cut(s) 389, 405
Hin1II CATG 3 cut(s) 71, 262, 346
HinfI GANTC 1 cut(s) 87
HpaII CCGG 2 cut(s) 389, 405
HphI GGTGA 2 cut(s) 173, 419
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 136, 340
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 346, 352
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 3 cut(s) 71, 262, 346
Kzo9I GATC 4 cut(s) 64, 72, 250, 371
LmnI GCTCC 2 cut(s) 8, 361
LpnPI CCDG 6 cut(s) 238, 354, 362, 396, 402, 418
Lsp1109I GCAGC 2 cut(s) 214, 325
MaeI CTAG 2 cut(s) 167, 173
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 161, 338
MalI GATC 4 cut(s) 66, 74, 252, 373
MboI GATC 4 cut(s) 64, 72, 250, 371
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 2 cut(s) 72, 371
MluCI AATT 2 cut(s) 153, 418
MnlI CCTC 5 cut(s) 86, 169, 257, 298, 406
MspI CCGG 2 cut(s) 389, 405
MunI CAATTG 1 cut(s) 418
NdeII GATC 4 cut(s) 64, 72, 250, 371
NlaIII CATG 3 cut(s) 71, 262, 346
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 346
PagI TCATGA 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 2 cut(s) 204, 315
PspEI GGTNACC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 309
PsuI RGATCY 2 cut(s) 72, 371
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 2 cut(s) 203, 314
Sau3AI GATC 4 cut(s) 64, 72, 250, 371
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 2 cut(s) 153, 418
SsiI CCGC 1 cut(s) 311
SspMI CTAG 2 cut(s) 167, 173
TaiI ACGT 1 cut(s) 323
TaqI TCGA 3 cut(s) 235, 249, 323
TasI AATT 2 cut(s) 153, 418
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 87
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 202, 313
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 212, 247, 322
TspRI CASTG 1 cut(s) 232
XceI RCATGY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 2 cut(s) 167, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.