Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Reverse (-)

871418 .. 873536

Gene Structure 2119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGGCTTTCACGGGTAGTTACAAGGAGAAAGAAAACCAAGAAGAAAATCAAGATAATCATCATCAGATCCTCAAAACTAGAATCTCTAGCCATCCTTTATATGGGCTCTTGGTTGAAACTCACCTAGACTGTCTGAAGGTAGGTGGTAATGAAGATGACCTAGAGGAAAGTGATGCCCTCAGGGATTATATGAAGCAGCTTGACAATCACAAGACCAGTACTTTAGGAGAATCAGAGCTCGATCACTTCATGGAAGCATATTGCTTGGCACTTAGGAAGCTGAAGGAAGCAATGGAGGAACCTCACCAAAAGTCCATGACTTTCATAACTAACATGCACCATCAACTCAAGGAGCTAACCGCCACCAGGTCTCATCTTGATCTACCTGAATCACCTGCCAGCTTCCACCACCACCGCCACACTTCTGGTCAGTCTAAAATTGGACCAACTAAATTGAACAGACAAACTAACAACATTAATTGCAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

164

Amino Acids

18.93

Weight (kDa)

5.93

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	25 - 49	7.9e-08	KNOX1 domain
KNOX2	PF03791	79 - 121	1.1e-10	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AciI	CCGC	2 cut(s)	363, 418
AclWI	GGATC	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	158, 305
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	104, 369
AgsI	TTSAA	2 cut(s)	119, 460
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	5 cut(s)	202, 241, 283, 358, 405
AluI	AGCT	5 cut(s)	202, 241, 283, 358, 405
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	116, 299, 387
AvaII	GGWCC	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	111, 243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	102, 351
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	4 cut(s)	81, 90, 128, 164
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 369
Bse1I	ACTGG	1 cut(s)	219
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	104, 369
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	104, 369
BsmAI	GTCTC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	111, 243
Bsp143I	GATC	3 cut(s)	69, 244, 382
BspACI	CCGC	2 cut(s)	363, 418
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	69, 244, 382
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	182, 275
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	3 cut(s)	72, 247, 385
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	3 cut(s)	69, 244, 382
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	446
CsiI	ACCWGGT	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	253, 319, 337
CviJI	RGCY	8 cut(s)	8, 93, 109, 202, 241, 283, 358, 405
CviKI_1	RGCY	8 cut(s)	8, 93, 109, 202, 241, 283, 358, 405
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	182, 275
DpnI	GATC	3 cut(s)	71, 246, 384
DpnII	GATC	3 cut(s)	69, 244, 382
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	111, 243
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	158, 305
Eco81I	CCTNAGG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	111, 243
FaeI	CATG	3 cut(s)	256, 322, 340
FaiI	YATR	9 cut(s)	103, 105, 192, 194, 254, 262, 320, 329, 338
FatI	CATG	3 cut(s)	252, 318, 336
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	2 cut(s)	111, 243
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	4 cut(s)	81, 90, 128, 164
GluI	GCNGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	256, 322, 340
HinfI	GANTC	3 cut(s)	84, 233, 392
HphI	GGTGA	3 cut(s)	116, 299, 387
Hpy188I	TCNGA	3 cut(s)	69, 138, 238
Hpy188III	TCNNGA	2 cut(s)	53, 380
HpyAV	CCTTC	2 cut(s)	133, 280
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	340, 486
HpyF3I	CTNAG	2 cut(s)	182, 275
Hsp92II	CATG	3 cut(s)	256, 322, 340
Kzo9I	GATC	3 cut(s)	69, 244, 382
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	169, 232, 355, 382, 402, 411, 414, 415
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	368
MaeI	CTAG	4 cut(s)	81, 90, 128, 164
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	71, 246, 384
MboI	GATC	3 cut(s)	69, 244, 382
MboII	GAAGA	2 cut(s)	56, 167
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	111, 243
MluCI	AATT	3 cut(s)	441, 455, 481
MnlI	CCTC	5 cut(s)	83, 160, 191, 292, 315
MseI	TTAA	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	69, 244, 382
NlaIII	CATG	3 cut(s)	256, 322, 340
NlaIV	GGNNCC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	84, 233, 392
PkrI	GCNGC	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	3 cut(s)	69, 244, 382
Sau96I	GGNCC	1 cut(s)	446
ScaI	AGTACT	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	111, 243
SexAI	ACCWGGT	1 cut(s)	368
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	441, 455, 481
SsiI	CCGC	2 cut(s)	363, 418
SspMI	CTAG	4 cut(s)	81, 90, 128, 164
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	441, 455, 481
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	3 cut(s)	84, 233, 392
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	168, 209, 241, 316
VpaK11BI	GGWCC	1 cut(s)	446
VspI	ATTAAT	1 cut(s)	480
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	4 cut(s)	81, 90, 128, 164
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.