Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

36328062 .. 36329980

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1232400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAGATGATTTGAGTAGTTCTAGTCAAAAGGAGAAGGAAAAAGAAGCAAATATTGAAGATCATGAGATTCTCAAAAAGAAAATCTCTACTCATCCTTTATATGGTTTGTTGGTTGAAAATCACTTGGACTGCTTGAAGGTTAGTGGAATCAACGGTGAACTAGAGGAAAATGATGGCTGCAGAGATATAAAACAGCTTGACTACAACTGCAAAGCAAATTTAGGCGTGCTTGGACATTCTGACCTCGATCACTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTGAAAGCAGCAATGGAGGAACCTCAGCAGAAGTCCATGGAGTTCATAACTAACATGCAGGTGCAACTTGAGGATCTCACAAACAACTCCCATCTGCCTGATCAACCTGCACCCGCCTCACTTTCTGGTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009954 GO:0010468 GO:0010556 GO:0010557 GO:0010589 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

142

Amino Acids

15.73

Weight (kDa)

4.66

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	25 - 48	1.7e-06	KNOX1 domain
KNOX2	PF03791	82 - 123	4.8e-08	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	2 cut(s)	337, 403
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	59, 119, 139
AluBI	AGCT	3 cut(s)	199, 289, 423
AluI	AGCT	3 cut(s)	199, 289, 423
AlwI	GGATC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	180, 296
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	167, 308
BccI	CCATC	2 cut(s)	170, 387
BclI	TGATCA	1 cut(s)	388
BfaI	CTAG	3 cut(s)	24, 164, 424
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	337, 403
BisI	GCNGC	2 cut(s)	181, 297
BlsI	GCNGC	2 cut(s)	182, 298
BmiI	GGNNCC	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	167, 308
BsgI	GTGCAG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	61, 250, 361, 388
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	2 cut(s)	337, 403
BspPI	GGATC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	61, 250, 361, 388
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	4 cut(s)	64, 253, 364, 391
BstMBI	GATC	4 cut(s)	61, 250, 361, 388
BstNSI	RCATGY	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	167, 308
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	94
BveI	ACCTGC	2 cut(s)	337, 403
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	64
CviAII	CATG	4 cut(s)	65, 259, 325, 343
CviJI	RGCY	4 cut(s)	180, 199, 289, 423
CviKI_1	RGCY	4 cut(s)	180, 199, 289, 423
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	63, 252, 363, 390
DpnII	GATC	4 cut(s)	61, 250, 361, 388
Eco130I	CCWWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	4 cut(s)	68, 262, 328, 346
FaiI	YATR	9 cut(s)	66, 103, 105, 191, 260, 268, 326, 335, 344
FatI	CATG	4 cut(s)	64, 258, 324, 342
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	181, 297
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	181, 297
FspBI	CTAG	3 cut(s)	24, 164, 424
GluI	GCNGC	2 cut(s)	181, 297
Hin1II	CATG	4 cut(s)	68, 262, 328, 346
HinfI	GANTC	2 cut(s)	70, 150
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	31, 133
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	183, 213, 346, 352, 398
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	68, 262, 328, 346
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	61, 250, 361, 388
LpnPI	CCDG	4 cut(s)	332, 399, 399, 408
Lsp1109I	GCAGC	2 cut(s)	167, 308
MaeI	CTAG	3 cut(s)	24, 164, 424
MalI	GATC	4 cut(s)	63, 252, 363, 390
MboI	GATC	4 cut(s)	61, 250, 361, 388
MboII	GAAGA	2 cut(s)	17, 71
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	6 cut(s)	160, 257, 298, 321, 352, 415
MslI	CAYNNNNRTG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	61, 250, 361, 388
NlaIII	CATG	4 cut(s)	68, 262, 328, 346
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	346
PagI	TCATGA	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	70, 150
PkrI	GCNGC	2 cut(s)	182, 298
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	2 cut(s)	181, 297
Sau3AI	GATC	4 cut(s)	61, 250, 361, 388
SetI	ASST	8 cut(s)	144, 201, 249, 291, 313, 351, 397, 425
SfcI	CTRYAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	402
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	3 cut(s)	24, 164, 424
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	70, 150
TseI	GCWGC	2 cut(s)	180, 296
TspDTI	ATGAA	2 cut(s)	247, 322
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	3 cut(s)	24, 164, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.