Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

23584340 .. 23586517

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20660.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATTTGTCTGGGGTTGGAACTTTCGGAAGGTTATAATATGGAAGATGATTTGAGTAGTTCTAGTCACAAGGAGAAGGAAAAAGAAGCAAATATTGAAGATCATGAGATTCTCAAAAAGAAAATCTCTACTCATCCTTTATATGGTTTGTTGATTGAAAATCACTTGGACTGCTTGAAGGTTAGTGGAATCAACGGCGAACTAGAGGCAAATGATGGCTGCGGAGATATGAAACAGCTTGACTACAACTGCAATGCAAATTTAGGCGTGCTTGGACATTCTGACCTCGATCACTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTGAAAGCAGCAATGGAGGAACCTCGGCAGAAGTCCATGGAGTTCATAACTAACATGCAGTTGCAACTTGAGGATCGATCACAAACAACTCCCATCTACCTGATCAACCTGCACCCGCCTCACTTTCTGGTGAAAGCTAGAGATGACTGTAGCACAAGGGCCATGGGACAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009954 GO:0010468 GO:0010556 GO:0010557 GO:0010589 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

168

Amino Acids

18.85

Weight (kDa)

5.1

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	444
AciI	CCGC	2 cut(s)	222, 443
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	98, 158, 178
AluBI	AGCT	3 cut(s)	238, 328, 464
AluI	AGCT	3 cut(s)	238, 328, 464
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	219, 335
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	206, 347
BccI	CCATC	2 cut(s)	209, 428
BceAI	ACGGC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	429
BfaI	CTAG	3 cut(s)	63, 203, 465
BfmI	CTRYAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	220, 336
BlsI	GCNGC	2 cut(s)	221, 337
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	350, 363, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	259, 345
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	350, 363, 489
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	2 cut(s)	259, 345
BseXI	GCAGC	2 cut(s)	206, 347
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	488
BshVI	ATCGAT	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	143
BsnI	GGCC	1 cut(s)	488
Bsp143I	GATC	5 cut(s)	100, 289, 400, 404, 429
Bsp19I	CCATGG	2 cut(s)	363, 489
BspACI	CCGC	2 cut(s)	222, 443
BspANI	GGCC	1 cut(s)	488
BspDI	ATCGAT	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	259, 345
BssECI	CCNNGG	3 cut(s)	350, 363, 489
BssMI	GATC	5 cut(s)	100, 289, 400, 404, 429
BssT1I	CCWWGG	2 cut(s)	363, 489
Bst4CI	ACNGT	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	269
BstDSI	CCRYGG	2 cut(s)	363, 489
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	103, 292, 403, 407, 432
BstMBI	GATC	5 cut(s)	100, 289, 400, 404, 429
BstNSI	RCATGY	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	206, 347
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	488
BsuTUI	ATCGAT	1 cut(s)	403
BtgI	CCRYGG	2 cut(s)	363, 489
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	269
CciI	TCATGA	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	486
ClaI	ATCGAT	1 cut(s)	403
CviAII	CATG	5 cut(s)	104, 298, 364, 382, 490
CviJI	RGCY	5 cut(s)	219, 238, 328, 464, 488
CviKI_1	RGCY	5 cut(s)	219, 238, 328, 464, 488
DpnI	GATC	5 cut(s)	102, 291, 402, 406, 431
DpnII	GATC	5 cut(s)	100, 289, 400, 404, 429
Eco130I	CCWWGG	2 cut(s)	363, 489
EcoT14I	CCWWGG	2 cut(s)	363, 489
ErhI	CCWWGG	2 cut(s)	363, 489
FaeI	CATG	5 cut(s)	107, 301, 367, 385, 493
FatI	CATG	5 cut(s)	103, 297, 363, 381, 489
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	220, 336
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	220, 336
FspBI	CTAG	3 cut(s)	63, 203, 465
GluI	GCNGC	2 cut(s)	220, 336
HaeIII	GGCC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	107, 301, 367, 385, 493
HinfI	GANTC	2 cut(s)	109, 189
HphI	GGTGA	1 cut(s)	469
Hpy188I	TCNGA	2 cut(s)	28, 283
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	23, 70, 172
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4V	TGCA	5 cut(s)	252, 257, 385, 391, 439
Hsp92II	CATG	5 cut(s)	107, 301, 367, 385, 493
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	100, 289, 400, 404, 429
LpnPI	CCDG	3 cut(s)	440, 440, 449
Lsp1109I	GCAGC	2 cut(s)	206, 347
MaeI	CTAG	3 cut(s)	63, 203, 465
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	5 cut(s)	102, 291, 402, 406, 431
MboI	GATC	5 cut(s)	100, 289, 400, 404, 429
MboII	GAAGA	2 cut(s)	56, 110
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	6 cut(s)	199, 296, 337, 360, 391, 456
NcoI	CCATGG	2 cut(s)	363, 489
NdeII	GATC	5 cut(s)	100, 289, 400, 404, 429
NlaIII	CATG	5 cut(s)	107, 301, 367, 385, 493
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	109, 189
PkrI	GCNGC	2 cut(s)	221, 337
PsiI	TTATAA	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	486
SatI	GCNGC	2 cut(s)	220, 336
Sau3AI	GATC	5 cut(s)	100, 289, 400, 404, 429
Sau96I	GGNCC	1 cut(s)	486
SetI	ASST	9 cut(s)	34, 183, 240, 288, 330, 352, 429, 438, 466
SfcI	CTRYAG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	222, 443
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	3 cut(s)	63, 203, 465
StyI	CCWWGG	2 cut(s)	363, 489
TaaI	ACNGT	1 cut(s)	476
TaqI	TCGA	2 cut(s)	288, 403
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	109, 189
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	219, 335
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	245, 286, 361
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	3 cut(s)	63, 203, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.