Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

55370295 .. 55371596

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0412000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGGGAAATCTGGGCAGAATGGCGGGAAGTTTTGGCGCCACAATCCCCATAACATCGTCCTTCGCGTCTCCTTCTCTATTTAAACCACCCCAATCTCCCTACCTGATCCTGAATCTCCCTCATCCCAAAAACCCAAATTACCGCCGTAATTCTCTCACCCAAATGGCCCAGCAAAACGGAAACCACGAAGTCACGGAGCGAGCTCCCAAGATCGCCAAGCTCCACCACAACGGCGACGTTTCGAAAACGACCTCCGCCGGTTTTTTCAGGGTGAAGAAGCTCTCTGAAAATGCCGTTTTGCCCTCCAGAGGTTCTCCTCTCTCTGCTGGTTATGACCTCTCAAGCGCAACGGAGACGAAGATACCAGCCAGAGGAAAAGCCTTGGTCCCAACCGATCTGAGCATTGCAGTTCCTGAAGGAACCTATGCCCGAGTTGCGCCGCGATCAGGGCTGACATGGAAGCACTCCATTGATGTGGGAGCTGGAGTGATAGATGCCGATTACAGAGGCCCGGTTGGAGTGATCTTGTTCAACCATTCTGATGTCGATTTCGAGATCAAGGTGGGTGATAGGATTGCTCAGCTGATAATTGAGATCATCATCACCCCTGATATTGTGGAGGTTGAGGATTTGGATTCCACTGTCAGAGGTGAAGGAGGGTTTGGGTCTACAGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

227

Amino Acids

24.19

Weight (kDa)

7.99

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dUTPase	PF00692	98 - 226	5.4e-45	dUTPase
DCD	PF22769	126 - 199	4.9e-08	dCTP deaminase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	671
AccII	CGCG	2 cut(s)	68, 445
AciI	CCGC	5 cut(s)	5, 26, 145, 258, 443
AclWI	GGATC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	311, 374, 449
AgsI	TTSAA	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	5 cut(s)	206, 223, 283, 485, 586
AluI	AGCT	5 cut(s)	206, 223, 283, 485, 586
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	2 cut(s)	75, 350
AlwI	GGATC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	2 cut(s)	168, 511
AspLEI	GCGC	3 cut(s)	41, 350, 442
AspS9I	GGNCC	3 cut(s)	169, 388, 512
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	5 cut(s)	151, 286, 581, 598, 665
AsuII	TTCGAA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	208
BceAI	ACGGC	3 cut(s)	132, 250, 281
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	2 cut(s)	75, 350
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	1 cut(s)	443
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	169, 388, 512
BmiI	GGNNCC	3 cut(s)	40, 390, 424
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	487
BpmI	CTGGAG	2 cut(s)	292, 507
Bpu1102I	GCTNAGC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 374, 449
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	3 cut(s)	311, 374, 449
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	392, 596
BseRI	GAGGAG	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	68, 445
BshFI	GGCC	2 cut(s)	170, 513
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	261, 515
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	311, 374, 449
BsmAI	GTCTC	2 cut(s)	75, 350
BsmBI	CGTCTC	2 cut(s)	75, 350
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	170, 513
BsoBI	CYCGRG	1 cut(s)	432
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	5 cut(s)	5, 26, 145, 258, 443
BspANI	GGCC	2 cut(s)	170, 513
BspCNI	CTCAG	2 cut(s)	393, 595
BspFNI	CGCG	2 cut(s)	68, 445
BspLI	GGNNCC	3 cut(s)	40, 390, 424
BspPI	GGATC	1 cut(s)	103
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	646
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	401, 582
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	2 cut(s)	68, 445
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	3 cut(s)	41, 350, 442
BstKTI	GATC	7 cut(s)	111, 216, 400, 449, 528, 561, 600
BstMAI	GTCTC	2 cut(s)	75, 350
BstMBI	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 451
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	672
BstUI	CGCG	2 cut(s)	68, 445
BstXI	CCANNNNNNTGG	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	170, 513
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	3 cut(s)	41, 350, 442
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	169, 388, 512
CseI	GACGC	1 cut(s)	57
CviAII	CATG	1 cut(s)	459
DdeI	CTNAG	2 cut(s)	401, 582
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	7 cut(s)	110, 215, 399, 448, 527, 560, 599
DpnII	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
DraI	TTTAAA	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	208
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	75, 350
FaeI	CATG	1 cut(s)	462
FaiI	YATR	4 cut(s)	53, 336, 429, 460
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	458
FauI	CCCGC	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	671
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	443
GlaI	GCGC	3 cut(s)	40, 349, 441
GluI	GCNGC	1 cut(s)	443
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	2 cut(s)	292, 507
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	170, 513
HapII	CCGG	2 cut(s)	261, 515
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	3 cut(s)	41, 350, 442
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	462
Hin6I	GCGC	3 cut(s)	39, 348, 440
HinP1I	GCGC	3 cut(s)	39, 348, 440
HinfI	GANTC	2 cut(s)	115, 638
HpaII	CCGG	2 cut(s)	261, 515
HphI	GGTGA	5 cut(s)	151, 286, 581, 598, 665
Hpy166II	GTNNAC	1 cut(s)	672
Hpy188I	TCNGA	4 cut(s)	289, 402, 544, 650
Hpy188III	TCNNGA	4 cut(s)	112, 309, 416, 556
Hpy8I	GTNNAC	1 cut(s)	672
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	73, 84, 413, 650
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 451
HpyF3I	CTNAG	2 cut(s)	401, 582
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	462
HspAI	GCGC	3 cut(s)	39, 348, 440
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
LmnI	GCTCC	4 cut(s)	199, 211, 228, 482
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	7 cut(s)	110, 215, 399, 448, 527, 560, 599
MboI	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
MboII	GAAGA	2 cut(s)	289, 373
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	3 cut(s)	139, 151, 591
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	499
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	3 cut(s)	164, 476, 543
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	2 cut(s)	261, 515
MspR9I	CCNGG	1 cut(s)	515
MvnI	CGCG	2 cut(s)	68, 445
MwoI	GCNNNNNNNGC	2 cut(s)	437, 451
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
NlaIII	CATG	1 cut(s)	462
NlaIV	GGNNCC	3 cut(s)	40, 390, 424
NmuCI	GTSAC	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 186
PfeI	GAWTC	2 cut(s)	115, 638
PkrI	GCNGC	1 cut(s)	444
PluTI	GGCGCC	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	40, 390, 424
PspPI	GGNCC	3 cut(s)	169, 388, 512
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	586
RseI	CAYNNNNRTG	3 cut(s)	164, 476, 543
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	7 cut(s)	108, 213, 397, 446, 525, 558, 597
Sau96I	GGNCC	3 cut(s)	169, 388, 512
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	672
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	3 cut(s)	164, 476, 543
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	139, 151, 591
SsiI	CCGC	5 cut(s)	5, 26, 145, 258, 443
SspDI	GGCGCC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	245, 549, 555
TasI	AATT	3 cut(s)	139, 151, 591
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	2 cut(s)	115, 638
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspGWI	ACGGA	3 cut(s)	195, 212, 368
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.