AT1G15050

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010081
Physical Location & Seq
Reverse (-)
5181991 .. 5183413
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15050.2

Sequence Viewer

Length: 558 bp
ATGTATTGCAGCGATCCTCCCCATCCCTTGCACTTAGTGGCATCAGACAAACAACAAAAAGACCACAAACTGATCCTTTCCTGGAAGAAACCAACAATGGACTCAGACCCACTCGGTGTTTTCCCAAATTCTCCCAAGTATCATCCATATTACTCGCAGACCACGGAGTTTGGTGGCGTAATCGATTTAGGTCTCAGCCTGAGAACCATACAACATGAGATTTACCACTCATCTGGCCAAAGATATTGTAGTAATGAAGGATACAGACGGAAGTGGGGTTATGTAAAGGTCACCATGGATGGTTTGGTGGTAGGTCGCAAGGTCTGTGTTCTTGATCATGGAAGCTATTCAACTCTTGCTCATCAACTCGAGGACATGTTTGGGATGCAGAGTGTGTCGGGATTGAGGTTGTTCCAGATGGAGTCTGAGTTCTGTTTGGTCTACAGAGACGAAGAAGGTCTGTGGAGAAATGCTGGGGATGTTCCATGGAATGAGTTCATAGAAAGCGTGGAGCGGCTGAGAATCACAAGAAGAAACGATGCTGTACTTCCCTTTTAA

Protein Analysis

185

Amino Acids

21.41

Weight (kDa)

6.44

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 54 - 150 5.4e-20 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0010081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15050 AT1G15050 AT2G01200 AT2G01200
fragaria_vesca FvH4_4g26700
malus_domestica MD13G1035200.v1.1
prunus_persica Prupe.1G317000_v2.0.a1
pyrus_communis pycom13g03080
rosa_chinensis RchiOBHm_Chr4g0434391
rosa_laevigata RLG00000006675
rosa_multiflora Rmu_co8521181.1_g000002
rosa_roxburghii Rroxscaffold_5G00375750
rosa_rugosa Rorug02G0288600 Rorug03G0339700 Rorug04G0276300
rosa_samantha Rh4AG331800 Rh4BG339600 Rh4CG354800 Rh4DG040900 Rh4DG334800
rosa_wichuraiana Rw4G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 441
AciI CCGC 1 cut(s) 514
AclWI GGATC 2 cut(s) 8, 67
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 127
AdeI CACNNNGTG 2 cut(s) 37, 116
AfaI GTAC 1 cut(s) 546
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 1 cut(s) 351
AjnI CCWGG 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 197, 441
AlwI GGATC 2 cut(s) 8, 67
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 127
Asp700I GAANNNNTTC 2 cut(s) 346, 494
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 368
BalI TGGCCA 1 cut(s) 237
BbvI GCAGC 1 cut(s) 21
BccI CCATC 3 cut(s) 30, 293, 412
BciT130I CCWGG 1 cut(s) 82
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 197, 441
BfmI CTRYAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 2 cut(s) 10, 515
BlsI GCNGC 2 cut(s) 11, 516
Bme1390I CCNGG 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 3 cut(s) 50, 375, 529
Bsa29I ATCGAT 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 162, 294, 485
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
BseBI CCWGG 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 162, 294, 485
BseGI GGATG 5 cut(s) 22, 142, 304, 390, 484
BseMII CTCAG 5 cut(s) 117, 191, 208, 417, 509
BseXI GCAGC 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 368
BsmAI GTCTC 2 cut(s) 197, 441
BsmBI CGTCTC 1 cut(s) 441
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 3 cut(s) 13, 72, 334
Bsp19I CCATGG 2 cut(s) 294, 485
BspACI CCGC 1 cut(s) 514
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 5 cut(s) 116, 192, 207, 418, 510
BspDI ATCGAT 1 cut(s) 183
BspPI GGATC 2 cut(s) 8, 67
BspTNI GGTCTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 514
BssECI CCNNGG 3 cut(s) 162, 294, 485
BssMI GATC 3 cut(s) 13, 72, 334
BssT1I CCWWGG 2 cut(s) 294, 485
Bst2UI CCWGG 1 cut(s) 82
BstDEI CTNAG 6 cut(s) 34, 103, 194, 200, 426, 518
BstDSI CCRYGG 3 cut(s) 162, 294, 485
BstEII GGTNACC 1 cut(s) 289
BstF5I GGATG 5 cut(s) 22, 142, 304, 390, 484
BstKTI GATC 3 cut(s) 16, 75, 337
BstMAI GTCTC 2 cut(s) 197, 441
BstMBI GATC 3 cut(s) 13, 72, 334
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 379
BstPI GGTNACC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 3 cut(s) 162, 294, 485
BtsCI GGATG 5 cut(s) 22, 142, 304, 390, 484
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 545
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 5 cut(s) 215, 295, 338, 376, 486
CviJI RGCY 4 cut(s) 198, 237, 345, 517
CviKI_1 RGCY 4 cut(s) 198, 237, 345, 517
CviQI GTAC 1 cut(s) 545
DdeI CTNAG 6 cut(s) 34, 103, 194, 200, 426, 518
DpnI GATC 3 cut(s) 15, 74, 336
DpnII GATC 3 cut(s) 13, 72, 334
DraIII CACNNNGTG 2 cut(s) 37, 116
EaeI YGGCCR 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 294, 485
Eco31I GGTCTC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 368
Eco91I GGTNACC 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 2 cut(s) 294, 485
ErhI CCWWGG 2 cut(s) 294, 485
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 5 cut(s) 218, 298, 341, 379, 489
FaiI YATR 9 cut(s) 148, 209, 216, 282, 296, 339, 377, 487, 500
FatI CATG 5 cut(s) 214, 294, 337, 375, 485
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 2 cut(s) 10, 515
FokI GGATG 5 cut(s) 9, 129, 311, 397, 491
Fsp4HI GCNGC 2 cut(s) 10, 515
GluI GCNGC 2 cut(s) 10, 515
GsaI CCCAGC 1 cut(s) 477
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 5 cut(s) 218, 298, 341, 379, 489
HinfI GANTC 3 cut(s) 101, 422, 522
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 46, 106, 427
Hpy188III TCNNGA 3 cut(s) 332, 399, 415
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 251, 449
HpyCH4V TGCA 3 cut(s) 9, 31, 388
HpyF3I CTNAG 6 cut(s) 34, 103, 194, 200, 426, 518
Hsp92II CATG 5 cut(s) 218, 298, 341, 379, 489
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 13, 72, 334
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 6 cut(s) 67, 94, 212, 219, 428, 459
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 3 cut(s) 50, 375, 529
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 15, 74, 336
MbiI CCGCTC 1 cut(s) 514
MboI GATC 3 cut(s) 13, 72, 334
MboII GAAGA 3 cut(s) 97, 464, 543
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 2 cut(s) 95, 431
MnlI CCTC 3 cut(s) 27, 364, 399
Mox20I TGGCCA 1 cut(s) 237
MroXI GAANNNNTTC 2 cut(s) 346, 494
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 556
Msp20I TGGCCA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
NcoI CCATGG 2 cut(s) 294, 485
NdeII GATC 3 cut(s) 13, 72, 334
NlaIII CATG 5 cut(s) 218, 298, 341, 379, 489
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 368
PciI ACATGT 1 cut(s) 375
PdmI GAANNNNTTC 2 cut(s) 346, 494
PfeI GAWTC 1 cut(s) 522
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 2 cut(s) 11, 516
PleI GAGTC 2 cut(s) 95, 430
PpsI GAGTC 2 cut(s) 95, 430
PscI ACATGT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 80
PspXI VCTCGAGB 1 cut(s) 368
RsaI GTAC 1 cut(s) 546
RsaNI GTAC 1 cut(s) 545
SaqAI TTAA 1 cut(s) 556
SatI GCNGC 2 cut(s) 10, 515
Sau3AI GATC 3 cut(s) 13, 72, 334
SchI GAGTC 2 cut(s) 95, 431
ScrFI CCNGG 1 cut(s) 82
SetI ASST 7 cut(s) 193, 291, 316, 324, 347, 410, 460
SfaNI GCATC 3 cut(s) 50, 375, 529
SfcI CTRYAG 1 cut(s) 442
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 1 cut(s) 127
SsiI CCGC 1 cut(s) 514
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 2 cut(s) 294, 485
TaqI TCGA 2 cut(s) 183, 369
TasI AATT 1 cut(s) 127
TatI WGTACW 1 cut(s) 544
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 1 cut(s) 522
Tru1I TTAA 1 cut(s) 556
Tru9I TTAA 1 cut(s) 556
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 270, 487
TspGWI ACGGA 2 cut(s) 179, 283
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 2 cut(s) 346, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.