Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8521181.1

Orthogroup ID

OG0010081

Physical Location & Seq

Genomic Coordinates Forward (+)

2335 .. 3176

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8521181.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggatcctaatgcatcaagctcattttattatgaagccaaagagaatgagggtattattgatcttggtcttagcctcagagctcttcaacctgaaacttatcatcatcatccatcaacacatttggtgagcttggagggctatgatggtctgatagattggccccaggctaacaacttgaatttgaagaatttgaatgtcataagtccgagaaatataccggaaggttgtgatgaggaagcagagggagtccagagcaaggagaggtgggcttatgtgaaagttaacatggatgggattgttattggcagaaaagtttgtgtaattgatcatagtggctactcgagccttgcatttcaactagaagacatgtttggtagacaatctgtatctgggttgaggttgttccaggttggatctgagttttcacttttttacaaggacacagatgacaattggagaactgttggtgatgttccatggagggaattcgtagaatgtgtgaagcggctaaggattgcgagaaagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

177

Amino Acids

20.2

Weight (kDa)

5.23

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15050 AT1G15050 AT2G01200 AT2G01200
fragaria_vesca	FvH4_4g26700
malus_domestica	MD13G1035200.v1.1
prunus_persica	Prupe.1G317000_v2.0.a1
pyrus_communis	pycom13g03080
rosa_chinensis	RchiOBHm_Chr4g0434391
rosa_laevigata	RLG00000006675
rosa_multiflora	Rmu_co8521181.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375750
rosa_rugosa	Rorug02G0288600 Rorug03G0339700 Rorug04G0276300
rosa_samantha	Rh4AG331800 Rh4BG339600 Rh4CG354800 Rh4DG040900 Rh4DG334800
rosa_wichuraiana	Rw4G028770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	2 cut(s)	12, 424
AcsI	RAATTY	3 cut(s)	181, 190, 488
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	5 cut(s)	89, 181, 187, 196, 359
AjnI	CCWGG	2 cut(s)	165, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	3 cut(s)	21, 83, 132
AluI	AGCT	3 cut(s)	21, 83, 132
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	12, 424
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	161
ApoI	RAATTY	3 cut(s)	181, 190, 488
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	139, 482
AvaI	CYCGRG	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	3 cut(s)	121, 140, 287
BciT130I	CCWGG	2 cut(s)	167, 410
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	1 cut(s)	362
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	2 cut(s)	167, 410
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	6, 164
BmrFI	CCNGG	2 cut(s)	167, 410
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	165, 479
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	167, 410
BseDI	CCNNGG	2 cut(s)	165, 479
BseGI	GGATG	2 cut(s)	109, 298
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	91, 411
BshFI	GGCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	4, 61, 328, 416
Bsp19I	CCATGG	1 cut(s)	479
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	90, 412
BspLI	GGNNCC	2 cut(s)	6, 164
BspPI	GGATC	2 cut(s)	12, 424
BspQI	GCTCTTC	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	165, 479
BssMI	GATC	4 cut(s)	4, 61, 328, 416
BssT1I	CCWWGG	1 cut(s)	479
Bst2UI	CCWGG	2 cut(s)	167, 410
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	90
BstDEI	CTNAG	4 cut(s)	71, 77, 420, 512
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	109, 298
BstKTI	GATC	4 cut(s)	7, 64, 331, 419
BstMBI	GATC	4 cut(s)	4, 61, 328, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 345
BstNI	CCWGG	2 cut(s)	167, 410
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	165, 408
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	4, 416
BstYI	RGATCY	2 cut(s)	4, 416
BsuRI	GGCC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	109, 298
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	3 cut(s)	289, 370, 480
DdeI	CTNAG	4 cut(s)	71, 77, 420, 512
DpnI	GATC	4 cut(s)	6, 63, 330, 418
DpnII	GATC	4 cut(s)	4, 61, 328, 416
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	165, 408
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	3 cut(s)	292, 373, 483
FaiI	YATR	9 cut(s)	33, 144, 203, 218, 276, 290, 333, 371, 481
FatI	CATG	3 cut(s)	288, 369, 479
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	2 cut(s)	96, 305
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	3 cut(s)	292, 373, 483
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	249
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	139, 482
Hpy166II	GTNNAC	2 cut(s)	286, 380
Hpy188I	TCNGA	4 cut(s)	80, 153, 210, 421
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	286, 380
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	14, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 345
HpyF3I	CTNAG	4 cut(s)	71, 77, 420, 512
Hsp92II	CATG	3 cut(s)	292, 373, 483
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	4, 61, 328, 416
LguI	GCTCTTC	1 cut(s)	90
LpnPI	CCDG	8 cut(s)	105, 152, 179, 234, 266, 378, 395, 422
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	362
MalI	GATC	4 cut(s)	6, 63, 330, 418
MboI	GATC	4 cut(s)	4, 61, 328, 416
MboII	GAAGA	3 cut(s)	77, 199, 377
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	2 cut(s)	4, 416
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	5 cut(s)	181, 190, 324, 454, 488
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	43, 86, 130, 229, 238, 258, 393, 477
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	167, 410
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	167, 410
MwoI	GCNNNNNNNGC	2 cut(s)	138, 345
NcoI	CCATGG	1 cut(s)	479
NdeII	GATC	4 cut(s)	4, 61, 328, 416
NlaIII	CATG	3 cut(s)	292, 373, 483
NlaIV	GGNNCC	2 cut(s)	6, 164
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	343
PciI	ACATGT	1 cut(s)	369
PciSI	GCTCTTC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	510
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PscI	ACATGT	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	165, 408
PspGI	CCWGG	2 cut(s)	165, 408
PspN4I	GGNNCC	2 cut(s)	6, 164
PspPI	GGNCC	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	4, 416
SacI	GAGCTC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	4 cut(s)	4, 61, 328, 416
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	2 cut(s)	167, 410
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	8 cut(s)	23, 85, 94, 134, 229, 269, 404, 414
SfaNI	GCATC	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	343
SlaI	CTCGAG	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	5 cut(s)	181, 190, 324, 454, 488
SsiI	CCGC	1 cut(s)	508
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	165, 408
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	344
TasI	AATT	5 cut(s)	181, 190, 324, 454, 488
TauI	GCSGC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	48
XapI	RAATTY	3 cut(s)	181, 190, 488
XceI	RCATGY	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.