Rh4DG040900

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010081
Physical Location & Seq
Forward (+)
6616258 .. 6617771
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG040900.1

Sequence Viewer

Length: 303 bp
ATGTTTGTTTGTTGGGAGGTTGTAGGAATGAATTCTAAATTGTGGCGTTACTTGAATTTGAAGAATTCGAATGTCGTAAGTCCGAGAAATATACCGGAAGATTGTGATGAGGAAGCAGAGGGAGTCCAGAGCAAGGAGAGGTGGGATTATGTGAAAGTTAACATGGATGGGATTGTTATTGGAAGAAAAGTTTGTGTACTTGATCATAGTGGCTACTCGAGCCTTGCATTTCAACTAGAAGACATGTTTGGTAGGTACAATCAATCTCAGAAGATAGTGAGGAGTTTGCATTCAGAAAATTAA

Protein Analysis

100

Amino Acids

11.62

Weight (kDa)

5.63

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 36 - 90 1.1e-10 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15050 AT1G15050 AT2G01200 AT2G01200
fragaria_vesca FvH4_4g26700
malus_domestica MD13G1035200.v1.1
prunus_persica Prupe.1G317000_v2.0.a1
pyrus_communis pycom13g03080
rosa_chinensis RchiOBHm_Chr4g0434391
rosa_laevigata RLG00000006675
rosa_multiflora Rmu_co8521181.1_g000002
rosa_roxburghii Rroxscaffold_5G00375750
rosa_rugosa Rorug02G0288600 Rorug03G0339700 Rorug04G0276300
rosa_samantha Rh4AG331800 Rh4BG339600 Rh4CG354800 Rh4DG040900 Rh4DG334800
rosa_wichuraiana Rw4G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 31, 55, 64
AfaI GTAC 2 cut(s) 198, 257
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 3 cut(s) 55, 61, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
Ama87I CYCGRG 1 cut(s) 217
ApoI RAATTY 3 cut(s) 31, 55, 64
Asp700I GAANNNNTTC 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 246
BccI CCATC 1 cut(s) 161
BclI TGATCA 1 cut(s) 202
BfaI CTAG 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 133
BsmI GAATGC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 217
Bsp119I TTCGAA 1 cut(s) 68
Bsp143I GATC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 68
BssMI GATC 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 172
Csp6I GTAC 2 cut(s) 197, 256
CviAII CATG 2 cut(s) 163, 244
CviJI RGCY 2 cut(s) 213, 222
CviKI_1 RGCY 2 cut(s) 213, 222
CviQI GTAC 2 cut(s) 197, 256
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 217
EcoRI GAATTC 2 cut(s) 31, 64
FaeI CATG 2 cut(s) 166, 247
FaiI YATR 5 cut(s) 92, 150, 164, 207, 245
FatI CATG 2 cut(s) 162, 243
FbaI TGATCA 1 cut(s) 202
FokI GGATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 236
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 166, 247
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 123
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 160, 197
Hpy188I TCNGA 3 cut(s) 84, 270, 295
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 160, 197
HpyCH4V TGCA 2 cut(s) 227, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 166, 247
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 108, 140
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 5 cut(s) 73, 110, 195, 251, 283
MluCI AATT 5 cut(s) 31, 38, 55, 64, 298
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 5 cut(s) 10, 103, 112, 132, 273
MroXI GAANNNNTTC 1 cut(s) 31
MseI TTAA 2 cut(s) 159, 301
MspI CCGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 166, 247
NspI RCATGY 1 cut(s) 247
NspV TTCGAA 1 cut(s) 68
PaeR7I CTCGAG 1 cut(s) 217
PciI ACATGT 1 cut(s) 243
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 31
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 243
PspXI VCTCGAGB 1 cut(s) 217
RsaI GTAC 2 cut(s) 198, 257
RsaNI GTAC 2 cut(s) 197, 256
SaqAI TTAA 2 cut(s) 159, 301
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 132
SetI ASST 3 cut(s) 21, 143, 257
Sfr274I CTCGAG 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 5 cut(s) 31, 38, 55, 64, 298
SspMI CTAG 1 cut(s) 236
TaqI TCGA 2 cut(s) 68, 218
TasI AATT 5 cut(s) 31, 38, 55, 64, 298
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 2 cut(s) 159, 301
Tru9I TTAA 2 cut(s) 159, 301
TspDTI ATGAA 1 cut(s) 44
XapI RAATTY 3 cut(s) 31, 55, 64
XceI RCATGY 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.