Rorug02G0288600

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
31566270 .. 31568166
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0288600.1

Sequence Viewer

Length: 1512 bp
ATGGAAGACATCTTCTTCTACACTTCTCTCTCCATCATCGTGTGCCTGCTGATCACTCTAAAGCTATTTGAACGGCGACGGTACCCTAACCTCCCTCCAAGTCCTTCCTTATCTCTTCCGATTCTCAATCACCTCCACCTTCTCAAATCCCCGGTCCACCGCACCTTCCACCGCCTCTCCCAAAAATGCGGCCCCATCTTCTCCCTCTGGTTCAGCTCCCGCCGCGTGGTCATTATCTCCTCCTCCTCGGCCGTGCAAGAATGCTTCACCAAAAATGACATCGTGTTGGCAAACCGTCCGCCCACGCTCCTGAGTAAGCACTTTGCGTACAACAGCACCACCATTACGACCTCCCCCTACGGCGATCAATGGCGAAACGTTCGGCGTATCGGCGCTGTCGAGGTCTTGTCCACCAGCCGCCTCAACTCTTTCTCAGATGTCAGAAAAGAAGAAGTCAAGCACTTGCTGCGCAAGCTTTTTCTAAACGCAGCAGAAGAAGAAGGTTGTTTTGTGAAAGTGGAGCTGAGGTTTATGTTATATGAGCGGACCTTCAACAACATAATGACAATGATGGCGGGGAAGAGGTATGTCGGGGACCATGTTGCGAAAAAGAAAGAGGGGAAGGAGTTCATTGAGATTATGGATGAGGCGTTTTCGTACAGCTTGGGAACCAACCCCGGAGAATTCATGCCCTTTTTCAAATGGTTTGGTGGTAATGGTTATGAGAGGAAGGTGAAGAAGTTGGGTAAGAGAGCAGATATGTTCTTGCAACGTCTGATTGATGAGCACAGGAACAAGACTGCTTCAGAGAGTAAAAATACCTTGATCGACCACATGCTTTCTCAGCAGGGGTCAGAACCGGAATATTACACTGATGAGATTATCAAAGGACTTATACTGAATCTATTATTGGCTGGCACTGATACATCGGCAGTGACATTAGAATGGGCCATGTCTGGTTTGCTAAACCATCCGGATACGTTAGATAAGGCTAGAGCTGAACTGAATGCTCAACTTGGTCAAGAATGCTTAGTAGACGAACAAGACATTTCTAAGCTTCCCTACCTACAAAGTATTATATCCGAGACTCTTCGATTGTATCCAACGGCACCAATGCTATTACCACATTTTGCATCAGATGATTGCATTGTAGGTGGATTTGATATACCACGTGACACATTGATATTGGTCAATGCATGGGCCATACATAGAGACCCGAAGTTGTGGGATGATTCAGAAAGCTTCAAACCTGAGAGGTTTGAAATCGGCAGTAAGGACGAGGCACACAAATATATGCCATTTGGAATGGGAAGAAGGGCTTGCCCCGGAGTAGGATTGGCCCAACATGAGGTAGACTTGACTTTGGCTTCATTGATTCAATGCTTTGAGTGGAAGAGGATCAGTAAGGAGGAGGTTGATATGACTGAAGGGACAGGACTCACCATGCCTAAACTAGTGCCATTTGAGGTCATGTACAAACCATGCTTCTTTTTTAACAAGGTTTTCCATTGA

Protein Analysis

503

Amino Acids

57.67

Weight (kDa)

7.24

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 484 2.7e-96 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010081)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 470
Acc65I GGTACC 1 cut(s) 81
AccB1I GGYRCC 2 cut(s) 81, 1108
AccBSI CCGCTC 1 cut(s) 544
AccI GTMKAC 2 cut(s) 1035, 1353
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 973
AciI CCGC 9 cut(s) 160, 172, 189, 220, 223, 299, 418, 544, 575
AclI AACGTT 1 cut(s) 378
AclWI GGATC 1 cut(s) 1406
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 2 cut(s) 789, 1446
AcvI CACGTG 1 cut(s) 1172
AfaI GTAC 4 cut(s) 83, 329, 659, 1475
AfiI CCNNNNNNNGG 3 cut(s) 226, 1331, 1348
AgsI TTSAA 6 cut(s) 71, 553, 700, 1246, 1262, 1379
AhlI ACTAGT 1 cut(s) 1453
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
AluBI AGCT 8 cut(s) 64, 216, 475, 523, 663, 998, 1057, 1242
AluI AGCT 8 cut(s) 64, 216, 475, 523, 663, 998, 1057, 1242
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 2 cut(s) 1079, 1206
AlwI GGATC 1 cut(s) 1406
Aor13HI TCCGGA 1 cut(s) 973
AoxI GGCC 5 cut(s) 190, 249, 948, 1200, 1338
ApeKI GCWGC 2 cut(s) 466, 488
ApoI RAATTY 1 cut(s) 683
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp700I GAANNNNTTC 1 cut(s) 626
Asp718I GGTACC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 395, 471
AspS9I GGNCC 7 cut(s) 154, 191, 546, 595, 948, 1200, 1339
AsuC2I CCSGG 3 cut(s) 152, 678, 1326
AsuHPI GGTGA 4 cut(s) 122, 259, 745, 1432
AvaII GGWCC 3 cut(s) 154, 546, 595
BanI GGYRCC 2 cut(s) 81, 1108
BbrPI CACGTG 1 cut(s) 1172
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 789
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 453, 500
BccI CCATC 4 cut(s) 41, 203, 565, 978
BceAI ACGGC 4 cut(s) 89, 236, 376, 1122
BciVI GTATCC 2 cut(s) 970, 1110
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 3 cut(s) 152, 678, 1326
BcoDI GTCTC 2 cut(s) 1079, 1206
BcuI ACTAGT 1 cut(s) 1453
BfaI CTAG 2 cut(s) 993, 1454
BfoI RGCGCY 1 cut(s) 396
BfuI GTATCC 2 cut(s) 970, 1110
BisI GCNGC 5 cut(s) 190, 223, 418, 467, 489
BlsI GCNGC 5 cut(s) 191, 224, 419, 468, 490
Bme1390I CCNGG 3 cut(s) 152, 678, 1326
Bme18I GGWCC 3 cut(s) 154, 546, 595
BmgT120I GGNCC 7 cut(s) 154, 191, 546, 595, 948, 1200, 1339
BmiI GGNNCC 5 cut(s) 83, 193, 596, 670, 1110
BmrFI CCNGG 3 cut(s) 152, 678, 1326
BmsI GCATC 1 cut(s) 1142
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 524
BpuMI CCSGG 3 cut(s) 152, 678, 1326
BsaAI YACGTR 1 cut(s) 1172
BsaI GGTCTC 1 cut(s) 1206
BsaJI CCNNGG 4 cut(s) 150, 246, 676, 1324
BsaWI WCCGGW 2 cut(s) 859, 973
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 512, 542
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 1331, 1348
BseAI TCCGGA 1 cut(s) 973
BseDI CCNNGG 4 cut(s) 150, 246, 676, 1324
BseGI GGATG 3 cut(s) 649, 970, 1234
BseLI CCNNNNNNNGG 3 cut(s) 226, 1331, 1348
BseMII CTCAG 5 cut(s) 302, 447, 515, 857, 1242
BseRI GAGGAG 4 cut(s) 229, 232, 235, 1424
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 453, 500
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 5 cut(s) 192, 251, 950, 1202, 1340
BshNI GGYRCC 2 cut(s) 81, 1108
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 789
BsiSI CCGG 5 cut(s) 152, 678, 860, 974, 1326
BslFI GGGAC 2 cut(s) 608, 1444
BslI CCNNNNNNNGG 3 cut(s) 226, 1331, 1348
BsmAI GTCTC 2 cut(s) 1079, 1206
BsmFI GGGAC 2 cut(s) 608, 1444
BsmI GAATGC 3 cut(s) 266, 1012, 1031
BsnI GGCC 5 cut(s) 192, 251, 950, 1202, 1340
Bso31I GGTCTC 1 cut(s) 1206
Bsp1286I GDGCHC 1 cut(s) 789
Bsp13I TCCGGA 1 cut(s) 973
Bsp1407I TGTACA 1 cut(s) 1473
Bsp143I GATC 4 cut(s) 51, 364, 825, 1398
BspACI CCGC 9 cut(s) 160, 172, 189, 220, 223, 299, 418, 544, 575
BspANI GGCC 5 cut(s) 192, 251, 950, 1202, 1340
BspCNI CTCAG 5 cut(s) 303, 446, 516, 856, 1243
BspEI TCCGGA 1 cut(s) 973
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 5 cut(s) 83, 193, 596, 670, 1110
BspPI GGATC 1 cut(s) 1406
BspT107I GGYRCC 2 cut(s) 81, 1108
BspTNI GGTCTC 1 cut(s) 1206
BsrBI CCGCTC 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 1473
BssECI CCNNGG 4 cut(s) 150, 246, 676, 1324
BssMI GATC 4 cut(s) 51, 364, 825, 1398
Bst4CI ACNGT 2 cut(s) 81, 296
Bst6I CTCTTC 4 cut(s) 120, 575, 1095, 1388
BstAPI GCANNNNNTGC 1 cut(s) 466
BstAUI TGTACA 1 cut(s) 1473
BstBAI YACGTR 1 cut(s) 1172
BstC8I GCNNGC 4 cut(s) 47, 473, 916, 1321
BstDEI CTNAG 7 cut(s) 311, 433, 524, 843, 1030, 1053, 1251
BstF5I GGATG 3 cut(s) 649, 970, 1234
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 2 cut(s) 395, 471
BstKTI GATC 4 cut(s) 54, 367, 828, 1401
BstMAI GTCTC 2 cut(s) 1079, 1206
BstMBI GATC 4 cut(s) 51, 364, 825, 1398
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 4 cut(s) 222, 466, 472, 844
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 3 cut(s) 150, 676, 1324
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 453, 500
BstV2I GAAGAC 1 cut(s) 12
BstZI CGGCCG 1 cut(s) 249
BsuI GTATCC 2 cut(s) 970, 1110
BsuRI GGCC 5 cut(s) 192, 251, 950, 1202, 1340
BtsCI GGATG 3 cut(s) 649, 970, 1234
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 3 cut(s) 870, 918, 939
Cac8I GCNNGC 4 cut(s) 47, 473, 916, 1321
CfoI GCGC 2 cut(s) 395, 471
Cfr13I GGNCC 7 cut(s) 154, 191, 546, 595, 948, 1200, 1339
Csp6I GTAC 4 cut(s) 82, 328, 658, 1474
CviAII CATG 9 cut(s) 599, 688, 835, 952, 1197, 1346, 1444, 1471, 1482
CviQI GTAC 4 cut(s) 82, 328, 658, 1474
DdeI CTNAG 7 cut(s) 311, 433, 524, 843, 1030, 1053, 1251
DpnI GATC 4 cut(s) 53, 366, 827, 1400
DpnII GATC 4 cut(s) 51, 364, 825, 1398
EaeI YGGCCR 1 cut(s) 249
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 4 cut(s) 120, 575, 1095, 1388
EarI CTCTTC 4 cut(s) 120, 575, 1095, 1388
EciI GGCGGA 1 cut(s) 288
EclXI CGGCCG 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 1206
Eco47I GGWCC 3 cut(s) 154, 546, 595
Eco52I CGGCCG 1 cut(s) 249
Eco57I CTGAAG 2 cut(s) 789, 1446
Eco72I CACGTG 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 683
EcoT22I ATGCAT 1 cut(s) 1198
FaeI CATG 9 cut(s) 602, 691, 838, 955, 1200, 1349, 1447, 1474, 1485
FalI AAGNNNNNCTT 2 cut(s) 1303, 1335
FaqI GGGAC 2 cut(s) 608, 1444
FatI CATG 9 cut(s) 598, 687, 834, 951, 1196, 1345, 1443, 1470, 1481
FauI CCCGC 2 cut(s) 227, 568
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 2 cut(s) 1035, 1353
Fnu4HI GCNGC 5 cut(s) 190, 223, 418, 467, 489
FokI GGATG 3 cut(s) 656, 957, 1241
Fsp4HI GCNGC 5 cut(s) 190, 223, 418, 467, 489
FspBI CTAG 2 cut(s) 993, 1454
FspI TGCGCA 1 cut(s) 470
GlaI GCGC 2 cut(s) 394, 470
GluI GCNGC 5 cut(s) 190, 223, 418, 467, 489
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 5 cut(s) 192, 251, 950, 1202, 1340
HapII CCGG 5 cut(s) 152, 678, 860, 974, 1326
HhaI GCGC 2 cut(s) 395, 471
Hin1II CATG 9 cut(s) 602, 691, 838, 955, 1200, 1349, 1447, 1474, 1485
Hin6I GCGC 2 cut(s) 393, 469
HinP1I GCGC 2 cut(s) 393, 469
HindIII AAGCTT 3 cut(s) 473, 1055, 1240
HinfI GANTC 6 cut(s) 121, 901, 1087, 1232, 1375, 1437
HpaII CCGG 5 cut(s) 152, 678, 860, 974, 1326
HphI GGTGA 4 cut(s) 122, 259, 745, 1432
Hpy166II GTNNAC 4 cut(s) 157, 411, 1036, 1354
Hpy188I TCNGA 9 cut(s) 120, 436, 443, 777, 808, 856, 1084, 1138, 1237
Hpy188III TCNNGA 3 cut(s) 310, 974, 1022
Hpy8I GTNNAC 4 cut(s) 157, 411, 1036, 1354
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 9 cut(s) 114, 149, 175, 494, 559, 616, 724, 1308, 1421
HpyCH4III ACNGT 2 cut(s) 81, 296
HpyCH4IV ACGT 4 cut(s) 378, 772, 980, 1171
HpyCH4V TGCA 5 cut(s) 256, 769, 1133, 1146, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 466, 472, 844
HpyF3I CTNAG 7 cut(s) 311, 433, 524, 843, 1030, 1053, 1251
HpySE526I ACGT 4 cut(s) 378, 772, 980, 1171
Hsp92II CATG 9 cut(s) 602, 691, 838, 955, 1200, 1349, 1447, 1474, 1485
HspAI GCGC 2 cut(s) 393, 469
Kpn2I TCCGGA 1 cut(s) 973
KpnI GGTACC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 4 cut(s) 51, 364, 825, 1398
LmnI GCTCC 3 cut(s) 221, 312, 520
Lsp1109I GCAGC 2 cut(s) 453, 500
LweI GCATC 1 cut(s) 1142
MaeI CTAG 2 cut(s) 993, 1454
MaeII ACGT 4 cut(s) 378, 772, 980, 1171
MaeIII GTNAC 2 cut(s) 934, 1172
MalI GATC 4 cut(s) 53, 366, 827, 1400
MbiI CCGCTC 1 cut(s) 544
MboI GATC 4 cut(s) 51, 364, 825, 1398
MhlI GDGCHC 1 cut(s) 789
MluCI AATT 1 cut(s) 683
MlyI GAGTC 2 cut(s) 1081, 1431
MmeI TCCRAC 1 cut(s) 1127
Mph1103I ATGCAT 1 cut(s) 1198
MroI TCCGGA 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 626
MseI TTAA 1 cut(s) 1494
MslI CAYNNNNRTG 2 cut(s) 38, 943
MspI CCGG 5 cut(s) 152, 678, 860, 974, 1326
MspR9I CCNGG 3 cut(s) 152, 678, 1326
Mva1269I GAATGC 3 cut(s) 266, 1012, 1031
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 222, 466, 472, 844
NciI CCSGG 3 cut(s) 152, 678, 1326
NdeII GATC 4 cut(s) 51, 364, 825, 1398
NlaIII CATG 9 cut(s) 602, 691, 838, 955, 1200, 1349, 1447, 1474, 1485
NlaIV GGNNCC 5 cut(s) 83, 193, 596, 670, 1110
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 2 cut(s) 934, 1172
NsbI TGCGCA 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 1198
NspI RCATGY 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 3 cut(s) 266, 1012, 1031
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 4 cut(s) 121, 901, 1232, 1375
PkrI GCNGC 5 cut(s) 191, 224, 419, 468, 490
PleI GAGTC 2 cut(s) 1081, 1431
PmaCI CACGTG 1 cut(s) 1172
PmlI CACGTG 1 cut(s) 1172
PpsI GAGTC 2 cut(s) 1081, 1431
Ppu21I YACGTR 1 cut(s) 1172
Psp1406I AACGTT 1 cut(s) 378
PspCI CACGTG 1 cut(s) 1172
PspN4I GGNNCC 5 cut(s) 83, 193, 596, 670, 1110
PspPI GGNCC 7 cut(s) 154, 191, 546, 595, 948, 1200, 1339
RsaI GTAC 4 cut(s) 83, 329, 659, 1475
RsaNI GTAC 4 cut(s) 82, 328, 658, 1474
RseI CAYNNNNRTG 2 cut(s) 38, 943
SaqAI TTAA 1 cut(s) 1494
SatI GCNGC 5 cut(s) 190, 223, 418, 467, 489
Sau3AI GATC 4 cut(s) 51, 364, 825, 1398
Sau96I GGNCC 7 cut(s) 154, 191, 546, 595, 948, 1200, 1339
SchI GAGTC 2 cut(s) 1081, 1431
ScrFI CCNGG 3 cut(s) 152, 678, 1326
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 1 cut(s) 1142
SinI GGWCC 3 cut(s) 154, 546, 595
SmiMI CAYNNNNRTG 2 cut(s) 38, 943
SpeI ACTAGT 1 cut(s) 1453
Sse9I AATT 1 cut(s) 683
SsiI CCGC 9 cut(s) 160, 172, 189, 220, 223, 299, 418, 544, 575
SspI AATATT 1 cut(s) 866
SspMI CTAG 2 cut(s) 993, 1454
StyD4I CCNGG 3 cut(s) 150, 676, 1324
TaaI ACNGT 2 cut(s) 81, 296
TaiI ACGT 4 cut(s) 381, 775, 983, 1174
TaqI TCGA 3 cut(s) 399, 828, 1093
TasI AATT 1 cut(s) 683
TatI WGTACW 1 cut(s) 1473
TauI GCSGC 3 cut(s) 192, 225, 420
TfiI GAWTC 4 cut(s) 121, 901, 1232, 1375
Tru1I TTAA 1 cut(s) 1494
Tru9I TTAA 1 cut(s) 1494
TscAI CASTG 3 cut(s) 877, 925, 939
TseFI GTSAC 2 cut(s) 934, 1172
TseI GCWGC 2 cut(s) 466, 488
Tsp45I GTSAC 2 cut(s) 934, 1172
TspDTI ATGAA 3 cut(s) 619, 676, 1359
TspRI CASTG 3 cut(s) 877, 925, 939
VpaK11BI GGWCC 3 cut(s) 154, 546, 595
XapI RAATTY 1 cut(s) 683
XceI RCATGY 1 cut(s) 838
XmiI GTMKAC 2 cut(s) 1035, 1353
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 2 cut(s) 993, 1454
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.