Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010081

Physical Location & Seq

Genomic Coordinates Reverse (-)

30532265 .. 30533090

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGATCCCAATGCATCAAGGTTTCTCTTCAATCCCTCAACCCTGCAGTCAGTTTACTATGAAGCCAAAGAGAATGATGGCATAATTGATCTTGGTCTCAGCCTGAGAGCTCTGCAGCCTGAAACTTACCATCCATCTGAGCAGTTGGAAAGCTTGGAGGGATATGATGATTTGATAGATTGGCCACAGGCTAACCTGAATTTGAAGAATTCTAGCATTATACATCCAAGAAACAACCCAGAAGATTGTGATGAAGAGGCAGAGGGAGTTCAAAGCAAGGAGAGGTGGGCTTATGTGAAAGTGAACATGGATGGGATTATCATTGGCAGAAAAGTTTGTATACTTGATCATAGTAGTTACTCAAGTCTTGCATTTCAACTAGAAGACATGTTTGGTAGACAATCCGTATCCGGGTTAAGGTTATTCCAGACTGGTTCCGAATTTTCACTTTTCTACAAGGACAGAGATGACAACTGGAGAACTGTTGGTGATGTTCCATGGAGGGAATTTGTAGAATGTGTGAAGCGGCTAAGGATTGCAAGAAAGAACGAAGCTCTTCTTTCCTCTTCTTTGAAATTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

195

Amino Acids

22.35

Weight (kDa)

4.89

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15050 AT1G15050 AT2G01200 AT2G01200
fragaria_vesca	FvH4_4g26700
malus_domestica	MD13G1035200.v1.1
prunus_persica	Prupe.1G317000_v2.0.a1
pyrus_communis	pycom13g03080
rosa_chinensis	RchiOBHm_Chr4g0434391
rosa_laevigata	RLG00000006675
rosa_multiflora	Rmu_co8521181.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375750
rosa_rugosa	Rorug02G0288600 Rorug03G0339700 Rorug04G0276300
rosa_samantha	Rh4AG331800 Rh4BG339600 Rh4CG354800 Rh4DG040900 Rh4DG334800
rosa_wichuraiana	Rw4G028770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	340, 397
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	5 cut(s)	199, 208, 440, 506, 575
AfiI	CCNNNNNNNGG	2 cut(s)	411, 417
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	5 cut(s)	31, 205, 272, 377, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	3 cut(s)	110, 153, 554
AluI	AGCT	3 cut(s)	110, 153, 554
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	5 cut(s)	199, 208, 440, 506, 575
Asp700I	GAANNNNTTC	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	4 cut(s)	71, 138, 142, 305
BciVI	GTATCC	1 cut(s)	418
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	2 cut(s)	213, 380
BfmI	CTRYAG	2 cut(s)	44, 113
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	2 cut(s)	116, 527
BlsI	GCNGC	2 cut(s)	117, 528
Bme1390I	CCNGG	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	6, 436
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 417
Bse1I	ACTGG	2 cut(s)	436, 479
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	3 cut(s)	130, 223, 316
BseLI	CCNNNNNNNGG	2 cut(s)	411, 417
BseMII	CTCAG	3 cut(s)	95, 112, 129
BseNI	ACTGG	2 cut(s)	436, 479
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	411, 417
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	4, 88, 346
Bsp19I	CCATGG	1 cut(s)	497
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	3 cut(s)	96, 111, 130
BspLI	GGNNCC	2 cut(s)	6, 436
BspMAI	CTGCAG	2 cut(s)	48, 117
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	436, 479
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	3 cut(s)	4, 88, 346
BssNAI	GTATAC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	4 cut(s)	32, 249, 561, 571
BstDEI	CTNAG	4 cut(s)	98, 104, 138, 530
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	3 cut(s)	130, 223, 316
BstKTI	GATC	3 cut(s)	7, 91, 349
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	4, 88, 346
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	2 cut(s)	44, 113
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	130, 223, 316
CviAII	CATG	3 cut(s)	307, 388, 498
DdeI	CTNAG	4 cut(s)	98, 104, 138, 530
DpnI	GATC	3 cut(s)	6, 90, 348
DpnII	GATC	3 cut(s)	4, 88, 346
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	4 cut(s)	32, 249, 561, 571
EarI	CTCTTC	4 cut(s)	32, 249, 561, 571
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	3 cut(s)	310, 391, 501
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FatI	CATG	3 cut(s)	306, 387, 497
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	340, 397
Fnu4HI	GCNGC	2 cut(s)	116, 527
FokI	GGATG	3 cut(s)	117, 210, 323
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	116, 527
FspBI	CTAG	2 cut(s)	213, 380
GluI	GCNGC	2 cut(s)	116, 527
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	411
Hin1II	CATG	3 cut(s)	310, 391, 501
HindIII	AAGCTT	1 cut(s)	151
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	4 cut(s)	55, 304, 341, 398
Hpy188I	TCNGA	2 cut(s)	139, 439
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	4 cut(s)	55, 304, 341, 398
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	5 cut(s)	14, 46, 115, 371, 539
HpyF3I	CTNAG	4 cut(s)	98, 104, 138, 530
Hsp92II	CATG	3 cut(s)	310, 391, 501
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	4, 88, 346
LguI	GCTCTTC	1 cut(s)	561
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	213, 380
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	6, 90, 348
MboI	GATC	3 cut(s)	4, 88, 346
MboII	GAAGA	7 cut(s)	19, 217, 254, 266, 395, 548, 558
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	6 cut(s)	84, 199, 208, 440, 506, 575
MluNI	TGGCCA	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	46, 151, 250, 256, 276, 495, 574
Mox20I	TGGCCA	1 cut(s)	184
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	2 cut(s)	416, 579
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	412
NciI	CCSGG	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	4, 88, 346
NlaIII	CATG	3 cut(s)	310, 391, 501
NlaIV	GGNNCC	2 cut(s)	6, 436
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	391
PciI	ACATGT	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	117, 528
PscI	ACATGT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	6, 436
PstI	CTGCAG	2 cut(s)	48, 117
PsuI	RGATCY	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	416, 579
SatI	GCNGC	2 cut(s)	116, 527
Sau3AI	GATC	3 cut(s)	4, 88, 346
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	23, 112, 155, 198, 287, 422, 556
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	2 cut(s)	44, 113
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	6 cut(s)	84, 199, 208, 440, 506, 575
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	2 cut(s)	213, 380
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	484
TasI	AATT	6 cut(s)	84, 199, 208, 440, 506, 575
TauI	GCSGC	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	416, 579
Tru9I	TTAA	2 cut(s)	416, 579
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	75, 267
TspGWI	ACGGA	1 cut(s)	394
XapI	RAATTY	5 cut(s)	199, 208, 440, 506, 575
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	2 cut(s)	340, 397
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	2 cut(s)	213, 380
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.