Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010081

Physical Location & Seq

Genomic Coordinates Forward (+)

2094253 .. 2095277

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATCCAAATGAATCAAGCTTTGTGGTCAGTCCTTCAACCTTCCAGTCAGTTTACTACGAAGCCAAAGAGAATGATGCCATCATTGATCTTGGTCTTAGCCTCAGAGCTCTGCAGCCTGAAACTTACCATCCATCTGCACATTTGGTGAGCTTGGAGGGATATGATGGTCTGATAGATTGGCCCCAGGCTAACCTGAACTTGAAGAACACTAGCATTCTAAACGCGAGAAATGTCGCGGAAGATTGCGACGAAGAAGCAGAGGGAGTGCAAAGCAAGGAGAGGAGGGCTTATGTGAAGGTTAACATGGATGGGCTTGTTATTGGCAGGAAAGTCTGTATTCCTGATCACAGTGGTTACTCGAGTCTTGCCTTTCAGCTGGAAGACATGTTTGGTAGACAATCTGCATCTGGGTTAAGGTTATGTCAGGATGCGTCCGAGTTTTTGCTTTTTTACAAGGACAGAGGTGACAATTGGCGAACTGTCGGTGATGTTCCATGGAAGTATGTTCTTTATCCTTTACTTAGACCTTGTTCGGAATTTGTAGAATGTGTGACGCGAATAAGGATTGCAAGAAAAAATCAAGCTTTTCTTTCACCTCCTTTGAAATTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

206

Amino Acids

23.22

Weight (kDa)

5.15

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15050 AT1G15050 AT2G01200 AT2G01200
fragaria_vesca	FvH4_4g26700
malus_domestica	MD13G1035200.v1.1
prunus_persica	Prupe.1G317000_v2.0.a1
pyrus_communis	pycom13g03080
rosa_chinensis	RchiOBHm_Chr4g0434391
rosa_laevigata	RLG00000006675
rosa_multiflora	Rmu_co8521181.1_g000002
rosa_roxburghii	Rroxscaffold_5G00375750
rosa_rugosa	Rorug02G0288600 Rorug03G0339700 Rorug04G0276300
rosa_samantha	Rh4AG331800 Rh4BG339600 Rh4CG354800 Rh4DG040900 Rh4DG334800
rosa_wichuraiana	Rw4G028770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	397
AccII	CGCG	3 cut(s)	227, 239, 559
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	539, 608
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	39, 205, 607
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	5 cut(s)	21, 110, 153, 379, 587
AluI	AGCT	5 cut(s)	21, 110, 153, 379, 587
Alw21I	GWGCWC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	539, 608
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	4 cut(s)	160, 479, 500, 588
AvaI	CYCGRG	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	5 cut(s)	89, 138, 142, 161, 305
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	6, 185
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	67, 416, 421
BpiI	GAAGAC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	186, 497
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	186, 497
BseGI	GGATG	3 cut(s)	130, 316, 436
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	3 cut(s)	227, 239, 559
BshFI	GGCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	4, 88, 346
Bsp19I	CCATGG	1 cut(s)	497
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	3 cut(s)	227, 239, 559
BspLI	GGNNCC	2 cut(s)	6, 185
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	186, 497
BssMI	GATC	3 cut(s)	4, 88, 346
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	353, 484
BstDEI	CTNAG	3 cut(s)	98, 104, 524
BstDSI	CCRYGG	1 cut(s)	497
BstF5I	GGATG	3 cut(s)	130, 316, 436
BstFNI	CGCG	3 cut(s)	227, 239, 559
BstKTI	GATC	3 cut(s)	7, 91, 349
BstMBI	GATC	3 cut(s)	4, 88, 346
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	113
BstUI	CGCG	3 cut(s)	227, 239, 559
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	130, 316, 436
BtsIMutI	CAGTG	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	2 cut(s)	423, 565
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	3 cut(s)	307, 388, 498
DdeI	CTNAG	3 cut(s)	98, 104, 524
DpnI	GATC	3 cut(s)	6, 90, 348
DpnII	GATC	3 cut(s)	4, 88, 346
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	3 cut(s)	310, 391, 501
FaiI	YATR	7 cut(s)	165, 294, 308, 389, 424, 499, 507
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FatI	CATG	3 cut(s)	306, 387, 497
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	3 cut(s)	117, 323, 443
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	184
HgaI	GACGC	2 cut(s)	423, 565
Hin1II	CATG	3 cut(s)	310, 391, 501
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	19, 585
HinfI	GANTC	2 cut(s)	14, 364
HpaI	GTTAAC	1 cut(s)	304
HphI	GGTGA	4 cut(s)	160, 479, 500, 588
Hpy166II	GTNNAC	3 cut(s)	55, 304, 398
Hpy188I	TCNGA	4 cut(s)	107, 174, 439, 538
Hpy188III	TCNNGA	2 cut(s)	344, 428
Hpy8I	GTNNAC	3 cut(s)	55, 304, 398
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	45, 52, 292
HpyCH4III	ACNGT	2 cut(s)	353, 484
HpyCH4V	TGCA	5 cut(s)	115, 140, 271, 407, 572
HpyF3I	CTNAG	3 cut(s)	98, 104, 524
Hsp92II	CATG	3 cut(s)	310, 391, 501
Ksp22I	TGATCA	1 cut(s)	346
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	4, 88, 346
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	3 cut(s)	67, 416, 421
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	356, 467, 553
MalI	GATC	3 cut(s)	6, 90, 348
MboI	GATC	3 cut(s)	4, 88, 346
MboII	GAAGA	4 cut(s)	217, 254, 266, 395
MfeI	CAATTG	1 cut(s)	472
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	3 cut(s)	472, 539, 608
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	7 cut(s)	113, 151, 256, 276, 279, 458, 609
MseI	TTAA	3 cut(s)	303, 416, 612
MspA1I	CMGCKG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	3 cut(s)	227, 239, 559
NcoI	CCATGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	4, 88, 346
NlaIII	CATG	3 cut(s)	310, 391, 501
NlaIV	GGNNCC	2 cut(s)	6, 185
NmuCI	GTSAC	2 cut(s)	467, 553
NspI	RCATGY	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	361
PciI	ACATGT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PscI	ACATGT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	6, 185
PspPI	GGNCC	1 cut(s)	183
PspXI	VCTCGAGB	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	303, 416, 612
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	4, 88, 346
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	3 cut(s)	67, 416, 421
SfcI	CTRYAG	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	3 cut(s)	472, 539, 608
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	2 cut(s)	353, 484
TaqI	TCGA	1 cut(s)	362
TasI	AATT	3 cut(s)	472, 539, 608
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	303, 416, 612
Tru9I	TTAA	3 cut(s)	303, 416, 612
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	467, 553
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	2 cut(s)	467, 553
TspDTI	ATGAA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	358
XapI	RAATTY	2 cut(s)	539, 608
XceI	RCATGY	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.