AT2G01200

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010081
Physical Location & Seq
Forward (+)
117969 .. 120095
2127 bp
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UTR
Exon/CDS
Intron
AT2G01200.1

Sequence Viewer

Length: 576 bp
ATGGACCCAAACACACCTGCAGACTTCTTCAAAGGTTCTTCCAAGTTTCATACATATTACTCACAGACCAAAAAGGGTGGTGGGGTAATCGATCTAGGCCTCAGCCTTAGGACCATACAACATGAAACTTACCTCCCACCGGCGCGAATGATAGGTCTCGACGGGTATGGAGAGCTCATAGACTGGTCGCAGCCCAGCTATAACAGCATTACACAGTTGAAGAGTGAGGACACTGGACACCAAAGACTTGCCCAAGGATATTACAATAATGAAGGAGAGAGCAGAGGAAAATATGCTTACGTAAAGGTAAATCTGGATGGCCTAGTGGTAGGGCGCAAGGTTTGCCTTGTTGATCAAGGAGCTTACGCAACTCTTGCTCTTCAGCTCAATGATATGTTTGGGATGCAGACCGTGTCGGGATTGAGGTTGTTCCAGACTGAGTCTGAGTTCTCTTTGGTCTACAGAGACAGAGAAGGCATTTGGAGGAATGTTGGGGATGTTCCATGGAAGGAGTTTGTCGAAAGCGTGGATCGGATGCGAATCGCAAGAAGAAACGATGCTCTTCTTCCCTTTTAA

Protein Analysis

191

Amino Acids

21.66

Weight (kDa)

6.31

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 91 - 187 1e-19 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15050 AT1G15050 AT2G01200 AT2G01200
fragaria_vesca FvH4_4g26700
malus_domestica MD13G1035200.v1.1
prunus_persica Prupe.1G317000_v2.0.a1
pyrus_communis pycom13g03080
rosa_chinensis RchiOBHm_Chr4g0434391
rosa_laevigata RLG00000006675
rosa_multiflora Rmu_co8521181.1_g000002
rosa_roxburghii Rroxscaffold_5G00375750
rosa_rugosa Rorug02G0288600 Rorug03G0339700 Rorug04G0276300
rosa_samantha Rh4AG331800 Rh4BG339600 Rh4CG354800 Rh4DG040900 Rh4DG334800
rosa_wichuraiana Rw4G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 145
AclWI GGATC 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 31, 220
AluBI AGCT 4 cut(s) 175, 198, 362, 385
AluI AGCT 4 cut(s) 175, 198, 362, 385
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 161, 459
AlwI GGATC 1 cut(s) 537
AoxI GGCC 2 cut(s) 97, 319
ApeKI GCWGC 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 2 cut(s) 145, 336
AspS9I GGNCC 2 cut(s) 4, 111
AvaII GGWCC 2 cut(s) 4, 111
AxyI CCTNAGG 1 cut(s) 107
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 311
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 161, 459
BfaI CTAG 2 cut(s) 95, 323
BfmI CTRYAG 2 cut(s) 18, 460
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme18I GGWCC 2 cut(s) 4, 111
BmgT120I GGNCC 2 cut(s) 4, 111
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 393, 525, 547
Bpu10I CCTNAGC 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 253, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 188, 238
Bse21I CCTNAGG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 539
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 253, 503
BseGI GGATG 4 cut(s) 322, 408, 502, 540
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 3 cut(s) 115, 429, 435
BseNI ACTGG 2 cut(s) 188, 238
BseXI GCAGC 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 2 cut(s) 99, 321
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 161, 459
BsnI GGCC 2 cut(s) 99, 321
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 91, 352, 529
Bsp19I CCATGG 1 cut(s) 503
BspANI GGCC 2 cut(s) 99, 321
BspCNI CTCAG 3 cut(s) 114, 430, 436
BspDI ATCGAT 1 cut(s) 90
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 537
BspQI GCTCTTC 2 cut(s) 384, 567
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 2 cut(s) 188, 238
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 253, 503
BssMI GATC 3 cut(s) 91, 352, 529
BssT1I CCWWGG 2 cut(s) 253, 503
Bst4CI ACNGT 2 cut(s) 216, 412
Bst6I CTCTTC 3 cut(s) 215, 384, 567
BstAPI GCANNNNNTGC 2 cut(s) 342, 374
BstBAI YACGTR 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 101, 107, 438, 444
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 4 cut(s) 322, 408, 502, 540
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 2 cut(s) 145, 336
BstKTI GATC 3 cut(s) 94, 355, 532
BstMAI GTCTC 2 cut(s) 161, 459
BstMBI GATC 3 cut(s) 91, 352, 529
BstMWI GCNNNNNNNGC 3 cut(s) 204, 342, 374
BstSFI CTRYAG 2 cut(s) 18, 460
BstSNI TACGTA 1 cut(s) 301
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 107
BsuRI GGCC 2 cut(s) 99, 321
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 4 cut(s) 322, 408, 502, 540
BtsIMutI CAGTG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 25
CfoI GCGC 2 cut(s) 145, 336
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 4, 111
ClaI ATCGAT 1 cut(s) 90
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 2 cut(s) 122, 504
CviJI RGCY 8 cut(s) 99, 105, 175, 193, 198, 321, 362, 385
CviKI_1 RGCY 8 cut(s) 99, 105, 175, 193, 198, 321, 362, 385
DdeI CTNAG 4 cut(s) 101, 107, 438, 444
DpnI GATC 3 cut(s) 93, 354, 531
DpnII GATC 3 cut(s) 91, 352, 529
Eam1104I CTCTTC 3 cut(s) 215, 384, 567
EarI CTCTTC 3 cut(s) 215, 384, 567
Ecl136II GAGCTC 1 cut(s) 175
Eco105I TACGTA 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 253, 503
Eco147I AGGCCT 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 4, 111
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 253, 503
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 253, 503
FaeI CATG 2 cut(s) 125, 507
FatI CATG 2 cut(s) 121, 503
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 4 cut(s) 329, 415, 509, 547
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 2 cut(s) 95, 323
GlaI GCGC 2 cut(s) 144, 335
GluI GCNGC 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 99, 321
HapII CCGG 1 cut(s) 140
HhaI GCGC 2 cut(s) 145, 336
Hin1II CATG 2 cut(s) 125, 507
Hin6I GCGC 2 cut(s) 143, 334
HinP1I GCGC 2 cut(s) 143, 334
HinfI GANTC 2 cut(s) 440, 540
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 445, 534
Hpy188III TCNNGA 4 cut(s) 158, 314, 417, 433
Hpy8I GTNNAC 1 cut(s) 460
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 266, 467, 502
HpyCH4III ACNGT 2 cut(s) 216, 412
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 20, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 342, 374
HpyF3I CTNAG 4 cut(s) 101, 107, 438, 444
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 2 cut(s) 125, 507
HspAI GCGC 2 cut(s) 143, 334
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 91, 352, 529
LguI GCTCTTC 2 cut(s) 384, 567
LmnI GCTCC 1 cut(s) 359
LpnPI CCDG 7 cut(s) 30, 153, 169, 208, 219, 299, 446
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 3 cut(s) 393, 525, 547
MaeI CTAG 2 cut(s) 95, 323
MaeII ACGT 1 cut(s) 300
MalI GATC 3 cut(s) 93, 354, 531
MboI GATC 3 cut(s) 91, 352, 529
MboII GAAGA 7 cut(s) 19, 30, 232, 371, 554, 557, 561
MhlI GDGCHC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 449
MnlI CCTC 6 cut(s) 110, 143, 220, 278, 417, 477
MseI TTAA 1 cut(s) 574
MspI CCGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 204, 342, 374
NcoI CCATGG 1 cut(s) 503
NdeII GATC 3 cut(s) 91, 352, 529
NlaIII CATG 2 cut(s) 125, 507
NlaIV GGNNCC 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 99
PciSI GCTCTTC 2 cut(s) 384, 567
PfeI GAWTC 1 cut(s) 540
PflFI GACNNNGTC 2 cut(s) 412, 439
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 111
PstI CTGCAG 1 cut(s) 22
PsyI GACNNNGTC 2 cut(s) 412, 439
SacI GAGCTC 1 cut(s) 177
SapI GCTCTTC 2 cut(s) 384, 567
SaqAI TTAA 1 cut(s) 574
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 3 cut(s) 91, 352, 529
Sau96I GGNCC 2 cut(s) 4, 111
SchI GAGTC 1 cut(s) 449
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 3 cut(s) 393, 525, 547
SfcI CTRYAG 2 cut(s) 18, 460
SgrAI CRCCGGYG 1 cut(s) 139
SinI GGWCC 2 cut(s) 4, 111
SnaBI TACGTA 1 cut(s) 301
SseBI AGGCCT 1 cut(s) 99
SspMI CTAG 2 cut(s) 95, 323
SstI GAGCTC 1 cut(s) 177
StuI AGGCCT 1 cut(s) 99
StyI CCWWGG 2 cut(s) 253, 503
TaaI ACNGT 2 cut(s) 216, 412
TaiI ACGT 1 cut(s) 303
TaqI TCGA 3 cut(s) 90, 159, 519
TfiI GAWTC 1 cut(s) 540
Tru1I TTAA 1 cut(s) 574
Tru9I TTAA 1 cut(s) 574
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 38, 138, 285
TspRI CASTG 1 cut(s) 238
Tth111I GACNNNGTC 2 cut(s) 412, 439
VpaK11BI GGWCC 2 cut(s) 4, 111
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 95, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.