AT1G15390

Removes the formyl group from the N-terminal Met of newly synthesized proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011241
Physical Location & Seq
Forward (+)
5294629 .. 5295931
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15390.1

Sequence Viewer

Length: 810 bp
ATGGGACTCCACCGAGACGAAGCGACGGCCATGGAAACCCTTTTCAGAGTCTCACTTCGTCTACTTCCGGTTTCCGCCGCCGTGACATGTCGCTCGATCCGATTCCCCGTTTCAAGACCCGGTTCCTCACACTTACTGAACCGTAAGCTGTATAATTTGCCTACTTCTTCTTCCTCCTCTTTGTCGACAAAAGCCGGTTGGTTATTGGGTCTTGGTGAGAAGAAAAAGAAAGTGGATTTACCGGAGATAGTGGCATCTGGTGACCCGGTTCTGCACGAGAAGGCCCGAGAAGTTGACCCGGGAGAAATCGGGTCGGAGCGTATTCAGAAGATAATTGATGATATGATTAAAGTTATGAGATTGGCTCCTGGAGTTGGCCTCGCTGCTCCTCAAATTGGTGTTCCCTTAAGGATTATTGTATTGGAAGATACAAAAGAGTATATAAGTTACGCACCAAAGGAAGAGATTCTTGCTCAAGAAAGACGTCATTTTGATCTCATGGTGATGGTGAATCCGGTTCTCAAGGAGAGAAGCAACAAGAAAGCTCTTTTCTTTGAAGGATGCTTGAGTGTTGATGGATTCAGAGCTGCGGTGGAGAGATACCTTGAGGTGGTAGTGACGGGCTACGATCGTCAAGGAAAGAGGATTGAAGTGAATGCTTCAGGTTGGCAAGCTAGGATTTTGCAACATGAGTGTGATCATTTGGATGGTAATCTTTACGTTGATAAGATGGTACCACGCACTTTTAGGACAGTCGACAACTTGGACTTGCCTTTAGCTGAGGGCTGCCCTAAGCTCGGACCTCAATGA

Protein Analysis

269

Amino Acids

30.0

Weight (kDa)

8.6

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep_deformylase PF01327 82 - 247 5.6e-50 Polypeptide deformylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15390
fragaria_vesca FvH4_6g30190
malus_domestica MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis pycom17g21000
rosa_chinensis RchiOBHm_Chr2g0136431
rosa_laevigata RLG00000019530
rosa_multiflora Rmu_sc0001998.1_g000005
rosa_roxburghii Rroxscaffold_2G00108300
rosa_rugosa Rorug02G0330100
rosa_samantha Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 487
Acc65I GGTACC 1 cut(s) 733
AccB1I GGYRCC 1 cut(s) 733
AccI GTMKAC 3 cut(s) 61, 185, 756
AciI CCGC 3 cut(s) 75, 78, 590
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 484
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 4 cut(s) 374, 395, 610, 797
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 3 cut(s) 114, 557, 650
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 6 cut(s) 148, 545, 587, 674, 779, 796
AluI AGCT 6 cut(s) 148, 545, 587, 674, 779, 796
Alw26I GTCTC 2 cut(s) 9, 55
AlwI GGATC 1 cut(s) 91
Ama87I CYCGRG 2 cut(s) 285, 298
AoxI GGCC 3 cut(s) 27, 282, 376
ApeKI GCWGC 3 cut(s) 383, 587, 786
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 733
AspS9I GGNCC 2 cut(s) 283, 800
AsuC2I CCSGG 4 cut(s) 120, 266, 299, 300
AsuHPI GGTGA 4 cut(s) 227, 272, 514, 520
AvaI CYCGRG 2 cut(s) 285, 298
AvaII GGWCC 1 cut(s) 800
BanI GGYRCC 1 cut(s) 733
BauI CACGAG 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 370, 574, 773
BccI CCATC 4 cut(s) 499, 569, 701, 724
BceAI ACGGC 2 cut(s) 42, 65
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 4 cut(s) 120, 266, 299, 300
BcoDI GTCTC 2 cut(s) 9, 55
BfaI CTAG 1 cut(s) 675
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 78, 384, 588, 787
BlsI GCNGC 4 cut(s) 79, 385, 589, 788
Bme1390I CCNGG 5 cut(s) 120, 266, 299, 300, 369
Bme18I GGWCC 1 cut(s) 800
BmeT110I CYCGRG 2 cut(s) 285, 298
BmgT120I GGNCC 2 cut(s) 283, 800
BmiI GGNNCC 3 cut(s) 124, 366, 735
BmrFI CCNGG 5 cut(s) 120, 266, 299, 300, 369
BmsI GCATC 2 cut(s) 263, 551
BplI GAGNNNNNCTC 4 cut(s) 349, 381, 363, 395
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 2 cut(s) 780, 792
BpuEI CTTGAG 4 cut(s) 459, 506, 586, 626
BpuMI CCSGG 4 cut(s) 120, 266, 299, 300
BsaBI GATNNNNATC 1 cut(s) 711
BsaHI GRCGYC 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 30, 298
BsaWI WCCGGW 3 cut(s) 67, 241, 514
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 395, 610, 797
Bse118I RCCGGY 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 30, 298
BseGI GGATG 2 cut(s) 566, 712
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 4 cut(s) 374, 395, 610, 797
BseMII CTCAG 1 cut(s) 771
BseRI GAGGAG 2 cut(s) 166, 378
BseXI GCAGC 3 cut(s) 370, 574, 773
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 631
BshFI GGCC 3 cut(s) 29, 284, 378
BshNI GGYRCC 1 cut(s) 733
BsiEI CGRYCG 1 cut(s) 631
BsiHKCI CYCGRG 2 cut(s) 285, 298
BsiSI CCGG 7 cut(s) 68, 120, 195, 242, 266, 299, 515
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 374, 395, 610, 797
BsmAI GTCTC 2 cut(s) 9, 55
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 3 cut(s) 29, 284, 378
BsoBI CYCGRG 2 cut(s) 285, 298
Bsp143I GATC 4 cut(s) 96, 493, 628, 697
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 3 cut(s) 75, 78, 590
BspANI GGCC 3 cut(s) 29, 284, 378
BspCNI CTCAG 1 cut(s) 772
BspLI GGNNCC 3 cut(s) 124, 366, 735
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 733
BspTI CTTAAG 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 30, 298
BssMI GATC 4 cut(s) 96, 493, 628, 697
BssNI GRCGYC 1 cut(s) 484
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 143, 754
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 484
BstAFI CTTAAG 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 2 cut(s) 780, 792
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 2 cut(s) 566, 712
BstKTI GATC 4 cut(s) 99, 496, 631, 700
BstMAI GTCTC 2 cut(s) 9, 55
BstMBI GATC 4 cut(s) 96, 493, 628, 697
BstMCI CGRYCG 1 cut(s) 631
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 5 cut(s) 118, 264, 297, 298, 367
BstV1I GCAGC 3 cut(s) 370, 574, 773
BsuRI GGCC 3 cut(s) 29, 284, 378
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 566, 712
Cac8I GCNNGC 1 cut(s) 672
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 283, 800
Cfr9I CCCGGG 1 cut(s) 298
Csp6I GTAC 1 cut(s) 734
CviAII CATG 4 cut(s) 31, 87, 499, 689
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 2 cut(s) 780, 792
DpnI GATC 4 cut(s) 98, 495, 630, 699
DpnII GATC 4 cut(s) 96, 493, 628, 697
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 2 cut(s) 285, 298
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 4 cut(s) 34, 90, 502, 692
FaiI YATR 9 cut(s) 32, 88, 153, 344, 356, 441, 443, 500, 690
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 30, 86, 498, 688
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 3 cut(s) 61, 185, 756
Fnu4HI GCNGC 4 cut(s) 78, 384, 588, 787
FokI GGATG 2 cut(s) 573, 719
Fsp4HI GCNGC 4 cut(s) 78, 384, 588, 787
FspBI CTAG 1 cut(s) 675
GluI GCNGC 4 cut(s) 78, 384, 588, 787
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 3 cut(s) 29, 284, 378
HapII CCGG 7 cut(s) 68, 120, 195, 242, 266, 299, 515
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 4 cut(s) 34, 90, 502, 692
HincII GTYRAC 3 cut(s) 186, 295, 757
HindII GTYRAC 3 cut(s) 186, 295, 757
HinfI GANTC 6 cut(s) 6, 48, 102, 466, 511, 579
HpaII CCGG 7 cut(s) 68, 120, 195, 242, 266, 299, 515
HphI GGTGA 4 cut(s) 227, 272, 514, 520
Hpy166II GTNNAC 4 cut(s) 62, 186, 295, 757
Hpy188I TCNGA 6 cut(s) 47, 101, 316, 327, 584, 800
Hpy188III TCNNGA 2 cut(s) 114, 476
Hpy8I GTNNAC 4 cut(s) 62, 186, 295, 757
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 274, 551
HpyCH4III ACNGT 2 cut(s) 143, 754
HpyCH4IV ACGT 2 cut(s) 484, 720
HpyCH4V TGCA 2 cut(s) 274, 685
HpyF3I CTNAG 2 cut(s) 780, 792
HpySE526I ACGT 2 cut(s) 484, 720
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 4 cut(s) 34, 90, 502, 692
KpnI GGTACC 1 cut(s) 737
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 4 cut(s) 96, 493, 628, 697
LmnI GCTCC 3 cut(s) 316, 370, 391
Lsp1109I GCAGC 3 cut(s) 370, 574, 773
LweI GCATC 2 cut(s) 263, 551
MaeI CTAG 1 cut(s) 675
MaeII ACGT 2 cut(s) 484, 720
MaeIII GTNAC 4 cut(s) 82, 260, 446, 616
MalI GATC 4 cut(s) 98, 495, 630, 699
MboI GATC 4 cut(s) 96, 493, 628, 697
MboII GAAGA 6 cut(s) 159, 162, 232, 340, 437, 473
MluCI AATT 3 cut(s) 154, 333, 393
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 8 cut(s) 136, 184, 187, 389, 399, 601, 636, 775
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 348, 407
MslI CAYNNNNRTG 3 cut(s) 503, 693, 705
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 7 cut(s) 68, 120, 195, 242, 266, 299, 515
MspR9I CCNGG 5 cut(s) 120, 266, 299, 300, 369
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 369
NciI CCSGG 4 cut(s) 120, 266, 299, 300
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 96, 493, 628, 697
NlaIII CATG 4 cut(s) 34, 90, 502, 692
NlaIV GGNNCC 3 cut(s) 124, 366, 735
NmuCI GTSAC 3 cut(s) 82, 260, 616
NspI RCATGY 1 cut(s) 90
PciI ACATGT 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 102, 466, 511, 579
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 4 cut(s) 79, 385, 589, 788
Ple19I CGATCG 1 cut(s) 631
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 367
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 124, 366, 735
PspPI GGNCC 2 cut(s) 283, 800
PvuI CGATCG 1 cut(s) 631
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
RseI CAYNNNNRTG 3 cut(s) 503, 693, 705
SalI GTCGAC 2 cut(s) 184, 755
SaqAI TTAA 2 cut(s) 348, 407
SatI GCNGC 4 cut(s) 78, 384, 588, 787
Sau3AI GATC 4 cut(s) 96, 493, 628, 697
Sau96I GGNCC 2 cut(s) 283, 800
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 5 cut(s) 120, 266, 299, 300, 369
SfaNI GCATC 2 cut(s) 263, 551
SinI GGWCC 1 cut(s) 800
SmaI CCCGGG 1 cut(s) 300
SmiMI CAYNNNNRTG 3 cut(s) 503, 693, 705
SmlI CTYRAG 5 cut(s) 406, 474, 521, 565, 605
SmoI CTYRAG 5 cut(s) 406, 474, 521, 565, 605
Sse9I AATT 3 cut(s) 154, 333, 393
SsiI CCGC 3 cut(s) 75, 78, 590
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 5 cut(s) 118, 264, 297, 298, 367
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 143, 754
TaiI ACGT 2 cut(s) 487, 723
TaqI TCGA 3 cut(s) 95, 185, 756
TasI AATT 3 cut(s) 154, 333, 393
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 4 cut(s) 102, 466, 511, 579
Tru1I TTAA 2 cut(s) 348, 407
Tru9I TTAA 2 cut(s) 348, 407
TseFI GTSAC 3 cut(s) 82, 260, 616
TseI GCWGC 3 cut(s) 383, 587, 786
Tsp45I GTSAC 3 cut(s) 82, 260, 616
TspMI CCCGGG 1 cut(s) 298
Vha464I CTTAAG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 800
XceI RCATGY 1 cut(s) 90
XmaI CCCGGG 1 cut(s) 298
XmiI GTMKAC 3 cut(s) 61, 185, 756
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 675
ZraI GACGTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.