Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Forward (+)

13240659 .. 13242519

Gene Structure 1861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1166000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCCCGATATAGTGAAAGCAGGTGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCCCGGGGATATTGGGTCGGAGAGGATCCAGAAGATAATTGAGGATATGGTGAGGGTGATGCGGAAGGCTCCCGGGGTCGGTCTTGCTGCTCCTCAGATTGGAATTCCCTTGAGGGTCAAAAATGTGGAAAGAAATGTAAAATGTAGCTTTCTTTTTCACCCTGCGTTGGTTCTTGCGAGTAAAATTTTTAGACAAGCGATAGTCTGCACTAAATTCGTTCTAAACTACGGGGAGGGGGATTCGAACTTGAGGACAGGGACGGGGATTCGAACTTGGCTAAGCCCATGTCTGCAGATAGATAGACCTTTTAATGTTTTGGAAGATACAAAGGAATATATCAGTTATGCACCTAAGGAAGCCACTGCAGCTCAAGATAGACGACCTTTTGATCTTTTGGTGATTCTTAATCCGAAGCTTAAAAAGAAGAGCAACAAGACTGCAGTATTCTTTGAAGGGTGCTTAAGTGTCGATGGATTCAGAGCAGTGGTGGAGCGAAACCTTGATGTTGAGGTTTCAGGTTTTGANNNN

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

196

Amino Acids

21.58

Weight (kDa)

8.9

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	3 - 62	2.3e-15	Polypeptide deformylase
Pep_deformylase	PF01327	144 - 194	4.1e-09	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	2 cut(s)	79, 92
AcsI	RAATTY	3 cut(s)	162, 243, 272
AfiI	CCNNNNNNNGG	3 cut(s)	137, 158, 226
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	1 cut(s)	512
AluBI	AGCT	3 cut(s)	207, 428, 475
AluI	AGCT	3 cut(s)	207, 428, 475
AlwI	GGATC	2 cut(s)	79, 92
Ama87I	CYCGRG	3 cut(s)	48, 62, 131
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	146, 425
ApoI	RAATTY	3 cut(s)	162, 243, 272
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	5 cut(s)	29, 63, 64, 132, 133
AsuHPI	GGTGA	5 cut(s)	35, 121, 127, 209, 469
AsuII	TTCGAA	2 cut(s)	302, 328
AvaI	CYCGRG	3 cut(s)	48, 62, 131
AxyI	CCTNAGG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	133, 437
BccI	CCATC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BcnI	CCSGG	5 cut(s)	29, 63, 64, 132, 133
BfmI	CTRYAG	3 cut(s)	350, 423, 498
BfrI	CTTAAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	147, 426
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	2 cut(s)	148, 427
Bme1390I	CCNGG	5 cut(s)	29, 63, 64, 132, 133
BmeT110I	CYCGRG	3 cut(s)	48, 62, 131
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	86, 129
BmrFI	CCNGG	5 cut(s)	29, 63, 64, 132, 133
BmsI	GCATC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	338
Bpu14I	TTCGAA	2 cut(s)	302, 328
BpuEI	CTTGAG	3 cut(s)	190, 328, 414
BpuMI	CCSGG	5 cut(s)	29, 63, 64, 132, 133
BsaJI	CCNNGG	4 cut(s)	62, 63, 131, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 158, 226
Bse118I	RCCGGY	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	411
BseDI	CCNNGG	4 cut(s)	62, 63, 131, 132
BseLI	CCNNNNNNNGG	3 cut(s)	137, 158, 226
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	133, 437
BsgI	GTGCAG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	3 cut(s)	48, 62, 131
BsiSI	CCGG	4 cut(s)	29, 44, 63, 132
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	137, 158, 226
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	3 cut(s)	48, 62, 131
Bsp119I	TTCGAA	2 cut(s)	302, 328
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	84, 448
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	86, 129
BspMAI	CTGCAG	3 cut(s)	354, 427, 502
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	79, 92
BspQI	GCTCTTC	1 cut(s)	479
BspT104I	TTCGAA	2 cut(s)	302, 328
BspTI	CTTAAG	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	4 cut(s)	62, 63, 131, 132
BssMI	GATC	2 cut(s)	84, 448
Bst6I	CTCTTC	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	520
BstBI	TTCGAA	2 cut(s)	302, 328
BstDEI	CTNAG	3 cut(s)	153, 338, 411
BstEII	GGTNACC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	87, 451
BstMBI	GATC	2 cut(s)	84, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	5 cut(s)	27, 61, 62, 130, 131
BstSFI	CTRYAG	3 cut(s)	350, 423, 498
BstV1I	GCAGC	2 cut(s)	133, 437
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	47
BtsI	GCAGTG	2 cut(s)	420, 549
BtsIMutI	CAGTG	2 cut(s)	420, 549
BveI	ACCTGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	46
Cfr9I	CCCGGG	2 cut(s)	62, 131
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	9 cut(s)	47, 61, 128, 207, 337, 342, 419, 428, 475
CviKI_1	RGCY	9 cut(s)	47, 61, 128, 207, 337, 342, 419, 428, 475
DdeI	CTNAG	3 cut(s)	153, 338, 411
DpnI	GATC	2 cut(s)	86, 450
DpnII	GATC	2 cut(s)	84, 448
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	3 cut(s)	48, 62, 131
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	1 cut(s)	348
FaiI	YATR	5 cut(s)	11, 107, 346, 396, 405
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	147, 426
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	147, 426
GluI	GCNGC	2 cut(s)	147, 426
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	4 cut(s)	29, 44, 63, 132
Hin1II	CATG	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	299, 325, 460, 534
HpaII	CCGG	4 cut(s)	29, 44, 63, 132
HphI	GGTGA	5 cut(s)	35, 121, 127, 209, 469
Hpy188I	TCNGA	4 cut(s)	79, 156, 471, 539
Hpy188III	TCNNGA	2 cut(s)	88, 431
HpyAV	CCTTC	2 cut(s)	118, 506
HpyCH4V	TGCA	6 cut(s)	37, 267, 352, 407, 425, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	153, 338, 411
Hsp92II	CATG	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	84, 448
LguI	GCTCTTC	1 cut(s)	479
LmnI	GCTCC	3 cut(s)	133, 154, 550
LpnPI	CCDG	9 cut(s)	6, 42, 57, 76, 101, 145, 234, 300, 561
Lsp1109I	GCAGC	2 cut(s)	133, 437
LweI	GCATC	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	86, 450
MboI	GATC	2 cut(s)	84, 448
MboII	GAAGA	3 cut(s)	103, 392, 496
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	4 cut(s)	96, 162, 243, 272
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	8 cut(s)	75, 94, 105, 162, 165, 286, 303, 562
MseI	TTAA	4 cut(s)	369, 465, 477, 521
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	4 cut(s)	29, 44, 63, 132
MspR9I	CCNGG	5 cut(s)	29, 63, 64, 132, 133
MwoI	GCNNNNNNNGC	1 cut(s)	425
NciI	CCSGG	5 cut(s)	29, 63, 64, 132, 133
NdeII	GATC	2 cut(s)	84, 448
NlaIII	CATG	1 cut(s)	348
NlaIV	GGNNCC	2 cut(s)	86, 129
NmuCI	GTSAC	1 cut(s)	23
NspV	TTCGAA	2 cut(s)	302, 328
PaqCI	CACCTGC	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	479
PfeI	GAWTC	4 cut(s)	299, 325, 460, 534
PkrI	GCNGC	2 cut(s)	148, 427
PspEI	GGTNACC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	86, 129
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	3 cut(s)	354, 427, 502
PsuI	RGATCY	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	479
SaqAI	TTAA	4 cut(s)	369, 465, 477, 521
SatI	GCNGC	2 cut(s)	147, 426
Sau3AI	GATC	2 cut(s)	84, 448
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	5 cut(s)	29, 63, 64, 132, 133
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	3 cut(s)	350, 423, 498
SfuI	TTCGAA	2 cut(s)	302, 328
SmaI	CCCGGG	2 cut(s)	64, 133
SmlI	CTYRAG	4 cut(s)	169, 307, 429, 520
SmoI	CTYRAG	4 cut(s)	169, 307, 429, 520
Sse9I	AATT	4 cut(s)	96, 162, 243, 272
SsiI	CCGC	1 cut(s)	121
StyD4I	CCNGG	5 cut(s)	27, 61, 62, 130, 131
TaqI	TCGA	3 cut(s)	302, 328, 528
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	96, 162, 243, 272
TfiI	GAWTC	4 cut(s)	299, 325, 460, 534
Tru1I	TTAA	4 cut(s)	369, 465, 477, 521
Tru9I	TTAA	4 cut(s)	369, 465, 477, 521
TscAI	CASTG	2 cut(s)	427, 549
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	146, 425
Tsp45I	GTSAC	1 cut(s)	23
TspMI	CCCGGG	2 cut(s)	62, 131
TspRI	CASTG	2 cut(s)	427, 549
Vha464I	CTTAAG	1 cut(s)	520
XapI	RAATTY	3 cut(s)	162, 243, 272
XmaI	CCCGGG	2 cut(s)	62, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.