Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Forward (+)

23322276 .. 23325661

Gene Structure 3386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGACCCTCCACCGATCCACACGTCTCCTCCCCATATCTCTCTCTGCACTATGCCTTACACGACCAACCACCACCCCGCAATTTCAAAGATTCCGACTACCCATTTCTACCCCCGGCATCCTAAACCCCAAACCGGCCTTCCACACCCGCAAAAGGTTCAGCTCATCTCCTTCTCCGGTTGCCAAAGCTGGTTGGTTTCTGGGCCTCGGAGAGAAGAAGAAGGGTCTCAGCCTGCCTGATATAGTCAAAGCTGGAGACCCGGTTTTGCACGAACCGGCGCGAGATGTTGAGGTCGAGGATATTGGGTCGGAGAGGATTCAGAAGATTATTGATGACATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGAGTGCCCTTAAGGATAATAGTCTTGGAAGATACGAAGGAATATATTAGTTATGCACCCAAGAATGAGATTAAAGTTCAAGATAGACGGCCGTTCGATCTTTTGGTGATTATTAACCCAAAGCTTCAAAAGAAGAGCAACAGGACTGCAGTATTCTTTGAAGGCTGCTTAAGTGTTGATGGATTCAGAGCAGTGGTAGAAAGATATCTTGATGTTGAAGTTTCAGGTTTCGATCGTGATGGCCAGCCCATAAAAATAGATGCTTCAGGTTGGCAGGCTCGTATTTTGCAACACGAGTGTGATCATATGGAAGGAACTATTTATGTTGACAAGATGCTCCCTAGAACATTTAGAACAGTTGAAAACTTGGACTTGCCTCTTGCTGAGGGGTGTCCCAAGCTTGGAAGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

269

Amino Acids

30.0

Weight (kDa)

9.24

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	81 - 245	1.5e-50	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	80, 151
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	482, 634
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	5 cut(s)	136, 156, 371, 392, 794
AflII	CTTAAG	2 cut(s)	403, 562
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	89, 473, 521, 554, 611, 755
AjiI	CACGTC	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AleI	CACNNNNGTG	1 cut(s)	690
AluBI	AGCT	5 cut(s)	165, 191, 254, 517, 793
AluI	AGCT	5 cut(s)	165, 191, 254, 517, 793
Alw26I	GTCTC	3 cut(s)	32, 233, 252
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	138, 205, 482, 634
ApeKI	GCWGC	2 cut(s)	380, 558
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	117, 263
AsuHPI	GGTGA	3 cut(s)	355, 361, 511
BaeGI	GKGCMC	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	636
BauI	CACGAG	1 cut(s)	686
BbvCI	CCTCAGC	1 cut(s)	777
BbvI	GCAGC	2 cut(s)	367, 545
BccI	CCATC	2 cut(s)	566, 626
BceAI	ACGGC	2 cut(s)	469, 497
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	2 cut(s)	117, 263
BcoDI	GTCTC	3 cut(s)	32, 233, 252
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	540
BfrI	CTTAAG	2 cut(s)	403, 562
BisI	GCNGC	2 cut(s)	381, 559
BlsI	GCNGC	2 cut(s)	382, 560
Bme1390I	CCNGG	3 cut(s)	117, 263, 366
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	117, 263, 366
BmsI	GCATC	3 cut(s)	129, 643, 717
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	777
BpuMI	CCSGG	2 cut(s)	117, 263
BsaI	GGTCTC	2 cut(s)	233, 252
BsaJI	CCNNGG	3 cut(s)	115, 208, 365
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 249, 279
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 156, 371, 392, 794
Bse118I	RCCGGY	2 cut(s)	136, 277
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	115, 208, 365
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	5 cut(s)	136, 156, 371, 392, 794
BseMII	CTCAG	2 cut(s)	244, 768
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	402
BseX3I	CGGCCG	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	367, 545
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	283
Bsh1285I	CGRYCG	2 cut(s)	485, 628
BshFI	GGCC	4 cut(s)	140, 207, 484, 636
BsiEI	CGRYCG	2 cut(s)	485, 628
BsiSI	CCGG	5 cut(s)	117, 137, 179, 263, 278
BslFI	GGGAC	1 cut(s)	771
BslI	CCNNNNNNNGG	5 cut(s)	136, 156, 371, 392, 794
BsmAI	GTCTC	3 cut(s)	32, 233, 252
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	771
BsnI	GGCC	4 cut(s)	140, 207, 484, 636
Bso31I	GGTCTC	2 cut(s)	233, 252
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	4 cut(s)	17, 490, 625, 694
BspACI	CCGC	2 cut(s)	80, 151
BspANI	GGCC	4 cut(s)	140, 207, 484, 636
BspCNI	CTCAG	2 cut(s)	243, 769
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	521
BspTI	CTTAAG	2 cut(s)	403, 562
BspTNI	GGTCTC	2 cut(s)	233, 252
BsrFI	RCCGGY	2 cut(s)	136, 277
BssAI	RCCGGY	2 cut(s)	136, 277
BssECI	CCNNGG	3 cut(s)	115, 208, 365
BssMI	GATC	4 cut(s)	17, 490, 625, 694
BssSI	CACGAG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	1 cut(s)	521
BstAFI	CTTAAG	2 cut(s)	403, 562
BstC8I	GCNNGC	3 cut(s)	236, 638, 669
BstDEI	CTNAG	2 cut(s)	230, 777
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	20, 493, 628, 697
BstMAI	GTCTC	3 cut(s)	32, 233, 252
BstMBI	GATC	4 cut(s)	17, 490, 625, 694
BstMCI	CGRYCG	2 cut(s)	485, 628
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	115, 261, 364
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	367, 545
BstZI	CGGCCG	1 cut(s)	482
BsuRI	GGCC	4 cut(s)	140, 207, 484, 636
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	236, 638, 669
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	2 cut(s)	136, 277
Cfr13I	GGNCC	1 cut(s)	205
CviAII	CATG	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	230, 777
DpnI	GATC	4 cut(s)	19, 492, 627, 696
DpnII	GATC	4 cut(s)	17, 490, 625, 694
EaeI	YGGCCR	2 cut(s)	482, 634
EagI	CGGCCG	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
EclXI	CGGCCG	1 cut(s)	482
Eco31I	GGTCTC	2 cut(s)	233, 252
Eco32I	GATATC	1 cut(s)	599
Eco52I	CGGCCG	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	343
FaqI	GGGAC	1 cut(s)	771
FatI	CATG	1 cut(s)	339
FauI	CCCGC	2 cut(s)	87, 158
FauNDI	CATATG	1 cut(s)	699
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	2 cut(s)	381, 559
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	381, 559
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	381, 559
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	140, 207, 484, 636
HapII	CCGG	5 cut(s)	117, 137, 179, 263, 278
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	2 cut(s)	515, 791
HinfI	GANTC	3 cut(s)	93, 319, 576
HpaII	CCGG	5 cut(s)	117, 137, 179, 263, 278
HphI	GGTGA	3 cut(s)	355, 361, 511
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	5 cut(s)	98, 212, 313, 324, 581
Hpy188III	TCNNGA	3 cut(s)	473, 602, 629
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	8 cut(s)	151, 183, 217, 340, 352, 424, 548, 698
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	50, 271, 449, 542, 682
HpyF3I	CTNAG	2 cut(s)	230, 777
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	17, 490, 625, 694
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	3 cut(s)	367, 388, 735
Lsp1109I	GCAGC	2 cut(s)	367, 545
LweI	GCATC	3 cut(s)	129, 643, 717
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	25
MalI	GATC	4 cut(s)	19, 492, 627, 696
MboI	GATC	4 cut(s)	17, 490, 625, 694
MboII	GAAGA	5 cut(s)	229, 232, 337, 434, 538
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	636
MmeI	TCCRAC	2 cut(s)	121, 291
MnlI	CCTC	9 cut(s)	20, 41, 218, 286, 292, 309, 348, 772, 780
Mox20I	TGGCCA	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	4 cut(s)	404, 465, 507, 563
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	636
MspCI	CTTAAG	2 cut(s)	403, 562
MspI	CCGG	5 cut(s)	117, 137, 179, 263, 278
MspR9I	CCNGG	3 cut(s)	117, 263, 366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	283
NciI	CCSGG	2 cut(s)	117, 263
NdeI	CATATG	1 cut(s)	699
NdeII	GATC	4 cut(s)	17, 490, 625, 694
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	363
OliI	CACNNNNGTG	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	521
PfeI	GAWTC	3 cut(s)	93, 319, 576
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	382, 560
Ple19I	CGATCG	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	544
PvuI	CGATCG	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	404, 465, 507, 563
SatI	GCNGC	2 cut(s)	381, 559
Sau3AI	GATC	4 cut(s)	17, 490, 625, 694
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	117, 263, 366
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	3 cut(s)	129, 643, 717
SfcI	CTRYAG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	403, 562
SmoI	CTYRAG	2 cut(s)	403, 562
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	2 cut(s)	80, 151
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	115, 261, 364
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	3 cut(s)	297, 489, 624
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	93, 319, 576
Tru1I	TTAA	4 cut(s)	404, 465, 507, 563
Tru9I	TTAA	4 cut(s)	404, 465, 507, 563
TscAI	CASTG	1 cut(s)	591
TseI	GCWGC	2 cut(s)	380, 558
TspRI	CASTG	1 cut(s)	591
Van91I	CCANNNNNTGG	1 cut(s)	392
Vha464I	CTTAAG	2 cut(s)	403, 562
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.