Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Forward (+)

32296228 .. 32296863

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGAGTTCCCTTAAGGATAATAGTCTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGGATGAGATTAAAGTTCAAGAGAGACGGCCTTTCGATCTTTTGGTGATTATTAACCCAAAGCTTCAAAAGAAGAGCAACAGGACTGCAGTATTCTTTGAAGGCTGCTTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

76

Amino Acids

8.64

Weight (kDa)

9.84

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	1 - 75	5.3e-16	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	32, 53
AflII	CTTAAG	2 cut(s)	64, 223
AgsI	TTSAA	3 cut(s)	134, 182, 215
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	41, 219
AsuHPI	GGTGA	3 cut(s)	16, 22, 172
BbvI	GCAGC	2 cut(s)	28, 206
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	201
BfrI	CTTAAG	2 cut(s)	64, 223
BisI	GCNGC	2 cut(s)	42, 220
BlsI	GCNGC	2 cut(s)	43, 221
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BsaJI	CCNNGG	2 cut(s)	26, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 53
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	26, 114
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	32, 53
BseXI	GCAGC	2 cut(s)	28, 206
BshFI	GGCC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	32, 53
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	182
BspTI	CTTAAG	2 cut(s)	64, 223
BssECI	CCNNGG	2 cut(s)	26, 114
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	2 cut(s)	64, 223
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	28, 206
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	124
CviJI	RGCY	4 cut(s)	23, 145, 178, 219
CviKI_1	RGCY	4 cut(s)	23, 145, 178, 219
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	133
FaiI	YATR	2 cut(s)	99, 108
Fnu4HI	GCNGC	2 cut(s)	42, 220
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	42, 220
GluI	GCNGC	2 cut(s)	42, 220
HaeIII	GGCC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	176
HphI	GGTGA	3 cut(s)	16, 22, 172
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	13, 209
HpyCH4V	TGCA	2 cut(s)	110, 203
Kzo9I	GATC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	28, 49
LpnPI	CCDG	3 cut(s)	12, 39, 181
Lsp1109I	GCAGC	2 cut(s)	28, 206
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	95, 199
MnlI	CCTC	1 cut(s)	9
MseI	TTAA	4 cut(s)	65, 126, 168, 224
MspCI	CTTAAG	2 cut(s)	64, 223
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	43, 221
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	65, 126, 168, 224
SatI	GCNGC	2 cut(s)	42, 220
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	3 cut(s)	12, 180, 230
SfcI	CTRYAG	1 cut(s)	201
SgeI	CNNG	7 cut(s)	38, 39, 50, 91, 127, 146, 208
SmlI	CTYRAG	2 cut(s)	64, 223
SmoI	CTYRAG	2 cut(s)	64, 223
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	1 cut(s)	150
Tru1I	TTAA	4 cut(s)	65, 126, 168, 224
Tru9I	TTAA	4 cut(s)	65, 126, 168, 224
TseI	GCWGC	2 cut(s)	41, 219
Van91I	CCANNNNNTGG	1 cut(s)	53
Vha464I	CTTAAG	2 cut(s)	64, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.