Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Reverse (-)

25012054 .. 25014715

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1207300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAAACCATCCACCGATTCTCGCTTCGTCTCGGCCCGATTTGTCTAGCTACCGCCCCGATATTTCTGAACTCCCGAATCATCTCTTTGAATCCCGGACTTCCAAACCCGGATCCAGTCTCCAACACCCATTTCACGATCCGGAAAAAGTTCAGCTCAACCTCTTCTCCCGTCGCCAAAGCCGGTTGGCTTCTGGGTCTCGGAGGAGAGAAGAAGAAGAGCATCAGCATGCCCGATATAGTGAAAGCAGGTGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCCCGGGGATATTGGGTCGGAGAGGATCCAGAAGATAATTGAGGATATGGTGAGGGTGATGCGGAAGGCTCCCGGGGTCGGTCTTGCTGCTCCTCAGATTGGAATTCCCTTGAGGGTCAATAATAGTTTTGGAAGATACAAAGGAATATATATCAGTTATGCACCTAAGGAAGCCACTGCAGCTCAAGATAGACGACCTTTTGATCTTTTGGTGATTCTTAATCCGAAGCTTAAAAAGAAGAGCAACAAGACTGCAGTATTCTTTGAAGGGTGCTTAAGTGTCGATGGATTCAGAGCAGTGGTGGAGCGAAACCTTGATGTTGAGGTTTCAGGTTTTGATCGAAATGGCCAGCCCATCAAAGTAAATGCTTCAGGTTGGCAGGCTCGTATTTTGCAGCATGAATGTGATCATTTGGAGGGAACTCTTTATGTTGATAAGATGGTCCCAAGAACATTTAGAACTGTTGAAAACTTGGACTTGCCCCTTGCTGAGGGGTGCCCCAAGCTCGGAAATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

269

Amino Acids

29.52

Weight (kDa)

9.53

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	79 - 246	4.1e-46	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	783
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	2 cut(s)	54, 349
AclWI	GGATC	5 cut(s)	107, 120, 133, 307, 320
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	4 cut(s)	365, 386, 778, 794
AflII	CTTAAG	1 cut(s)	562
AgsI	TTSAA	3 cut(s)	91, 554, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	5 cut(s)	50, 156, 470, 517, 793
AluI	AGCT	5 cut(s)	50, 156, 470, 517, 793
Alw26I	GTCTC	3 cut(s)	35, 124, 203
AlwI	GGATC	5 cut(s)	107, 120, 133, 307, 320
Ama87I	CYCGRG	3 cut(s)	276, 290, 359
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	3 cut(s)	34, 273, 634
ApeKI	GCWGC	3 cut(s)	374, 467, 682
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	35, 274, 730
AsuC2I	CCSGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
AsuHPI	GGTGA	4 cut(s)	263, 349, 355, 511
AvaI	CYCGRG	3 cut(s)	276, 290, 359
AvaII	GGWCC	1 cut(s)	730
AxyI	CCTNAGG	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	788
BalI	TGGCCA	1 cut(s)	636
BamHI	GGATCC	2 cut(s)	112, 312
BanI	GGYRCC	1 cut(s)	783
BanII	GRGCYC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	777
BbvI	GCAGC	3 cut(s)	361, 479, 694
BccI	CCATC	4 cut(s)	17, 566, 650, 721
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
BcoDI	GTCTC	3 cut(s)	35, 124, 203
BfaI	CTAG	2 cut(s)	47, 805
BfmI	CTRYAG	2 cut(s)	465, 540
BfrI	CTTAAG	1 cut(s)	562
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	375, 468, 683
BlsI	GCNGC	3 cut(s)	376, 469, 684
Bme1390I	CCNGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
Bme18I	GGWCC	1 cut(s)	730
BmeT110I	CYCGRG	3 cut(s)	276, 290, 359
BmgT120I	GGNCC	3 cut(s)	35, 274, 730
BmiI	GGNNCC	5 cut(s)	114, 314, 357, 732, 785
BmrFI	CCNGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
BmsI	GCATC	2 cut(s)	231, 336
Bpu10I	CCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	2 cut(s)	418, 456
BpuMI	CCSGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	4 cut(s)	290, 291, 359, 360
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 386, 778, 794
Bse118I	RCCGGY	2 cut(s)	182, 271
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	141
BseDI	CCNNGG	4 cut(s)	290, 291, 359, 360
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	4 cut(s)	365, 386, 778, 794
BseMII	CTCAG	2 cut(s)	395, 768
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	219, 369
BseSI	GKGCMC	1 cut(s)	788
BseXI	GCAGC	3 cut(s)	361, 479, 694
BshFI	GGCC	3 cut(s)	36, 275, 636
BshNI	GGYRCC	1 cut(s)	783
BsiHKCI	CYCGRG	3 cut(s)	276, 290, 359
BsiSI	CCGG	8 cut(s)	96, 110, 142, 183, 257, 272, 291, 360
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	4 cut(s)	365, 386, 778, 794
BsmAI	GTCTC	3 cut(s)	35, 124, 203
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	3 cut(s)	36, 275, 636
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	3 cut(s)	276, 290, 359
Bsp1286I	GDGCHC	2 cut(s)	291, 788
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
BspACI	CCGC	2 cut(s)	54, 349
BspANI	GGCC	3 cut(s)	36, 275, 636
BspCNI	CTCAG	2 cut(s)	394, 769
BspEI	TCCGGA	1 cut(s)	141
BspLI	GGNNCC	5 cut(s)	114, 314, 357, 732, 785
BspMAI	CTGCAG	2 cut(s)	469, 544
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	5 cut(s)	107, 120, 133, 307, 320
BspQI	GCTCTTC	2 cut(s)	212, 521
BspT107I	GGYRCC	1 cut(s)	783
BspTI	CTTAAG	1 cut(s)	562
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	182, 271
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	2 cut(s)	182, 271
BssECI	CCNNGG	4 cut(s)	290, 291, 359, 360
BssMI	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	3 cut(s)	169, 212, 521
BstAFI	CTTAAG	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	230, 638, 669
BstDEI	CTNAG	3 cut(s)	381, 453, 777
BstEII	GGTNACC	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	776
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	6 cut(s)	115, 141, 315, 493, 628, 697
BstMAI	GTCTC	3 cut(s)	35, 124, 203
BstMBI	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	7 cut(s)	94, 108, 255, 289, 290, 358, 359
BstSFI	CTRYAG	2 cut(s)	465, 540
BstSLI	GKGCMC	1 cut(s)	788
BstV1I	GCAGC	3 cut(s)	361, 479, 694
BstX2I	RGATCY	2 cut(s)	112, 312
BstYI	RGATCY	2 cut(s)	112, 312
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	36, 275, 636
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	2 cut(s)	462, 591
BtsIMutI	CAGTG	2 cut(s)	462, 591
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	3 cut(s)	230, 638, 669
Cfr10I	RCCGGY	2 cut(s)	182, 271
Cfr13I	GGNCC	3 cut(s)	35, 274, 730
Cfr9I	CCCGGG	2 cut(s)	290, 359
CviAII	CATG	2 cut(s)	229, 686
DdeI	CTNAG	3 cut(s)	381, 453, 777
DpnI	GATC	6 cut(s)	114, 140, 314, 492, 627, 696
DpnII	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	3 cut(s)	169, 212, 521
EarI	CTCTTC	3 cut(s)	169, 212, 521
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	453
Eco88I	CYCGRG	3 cut(s)	276, 290, 359
Eco91I	GGTNACC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	776
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	232, 689
FaiI	YATR	8 cut(s)	230, 239, 335, 436, 438, 447, 687, 717
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	2 cut(s)	228, 685
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	375, 468, 683
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	375, 468, 683
FspBI	CTAG	2 cut(s)	47, 805
GluI	GCNGC	3 cut(s)	375, 468, 683
HaeIII	GGCC	3 cut(s)	36, 275, 636
HapII	CCGG	8 cut(s)	96, 110, 142, 183, 257, 272, 291, 360
Hin1II	CATG	2 cut(s)	232, 689
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	18, 78, 91, 502, 576
HpaII	CCGG	8 cut(s)	96, 110, 142, 183, 257, 272, 291, 360
HphI	GGTGA	4 cut(s)	263, 349, 355, 511
Hpy188I	TCNGA	7 cut(s)	69, 203, 307, 384, 513, 581, 797
Hpy188III	TCNNGA	5 cut(s)	75, 136, 142, 316, 473
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	346, 548
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	5 cut(s)	265, 449, 467, 542, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	3 cut(s)	381, 453, 777
Hsp92II	CATG	2 cut(s)	232, 689
Kpn2I	TCCGGA	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
LguI	GCTCTTC	2 cut(s)	212, 521
LmnI	GCTCC	3 cut(s)	361, 382, 592
Lsp1109I	GCAGC	3 cut(s)	361, 479, 694
LweI	GCATC	2 cut(s)	231, 336
MaeI	CTAG	2 cut(s)	47, 805
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	6 cut(s)	114, 140, 314, 492, 627, 696
MboI	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
MboII	GAAGA	7 cut(s)	156, 223, 226, 229, 331, 432, 538
MflI	RGATCY	2 cut(s)	112, 312
MhlI	GDGCHC	2 cut(s)	291, 788
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	2 cut(s)	324, 390
MluNI	TGGCCA	1 cut(s)	636
MmeI	TCCRAC	2 cut(s)	147, 285
Mox20I	TGGCCA	1 cut(s)	636
MroI	TCCGGA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	3 cut(s)	507, 519, 563
MslI	CAYNNNNRTG	2 cut(s)	227, 690
Msp20I	TGGCCA	1 cut(s)	636
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	8 cut(s)	96, 110, 142, 183, 257, 272, 291, 360
MspR9I	CCNGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
NdeII	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
NlaIII	CATG	2 cut(s)	232, 689
NlaIV	GGNNCC	5 cut(s)	114, 314, 357, 732, 785
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	239
PciSI	GCTCTTC	2 cut(s)	212, 521
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	5 cut(s)	18, 78, 91, 502, 576
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	376, 469, 684
PspEI	GGTNACC	1 cut(s)	251
PspN4I	GGNNCC	5 cut(s)	114, 314, 357, 732, 785
PspPI	GGNCC	3 cut(s)	35, 274, 730
PstI	CTGCAG	2 cut(s)	469, 544
PsuI	RGATCY	2 cut(s)	112, 312
RseI	CAYNNNNRTG	2 cut(s)	227, 690
SapI	GCTCTTC	2 cut(s)	212, 521
SaqAI	TTAA	3 cut(s)	507, 519, 563
SatI	GCNGC	3 cut(s)	375, 468, 683
Sau3AI	GATC	6 cut(s)	112, 138, 312, 490, 625, 694
Sau96I	GGNCC	3 cut(s)	35, 274, 730
ScrFI	CCNGG	7 cut(s)	96, 110, 257, 291, 292, 360, 361
SduI	GDGCHC	2 cut(s)	291, 788
SfaNI	GCATC	2 cut(s)	231, 336
SfcI	CTRYAG	2 cut(s)	465, 540
SinI	GGWCC	1 cut(s)	730
SmaI	CCCGGG	2 cut(s)	292, 361
SmiMI	CAYNNNNRTG	2 cut(s)	227, 690
SmlI	CTYRAG	3 cut(s)	397, 471, 562
SmoI	CTYRAG	3 cut(s)	397, 471, 562
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	2 cut(s)	324, 390
SsiI	CCGC	2 cut(s)	54, 349
SspMI	CTAG	2 cut(s)	47, 805
StyD4I	CCNGG	7 cut(s)	94, 108, 255, 289, 290, 358, 359
TaaI	ACNGT	1 cut(s)	751
TaqI	TCGA	2 cut(s)	570, 628
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	324, 390
TfiI	GAWTC	5 cut(s)	18, 78, 91, 502, 576
Tru1I	TTAA	3 cut(s)	507, 519, 563
Tru9I	TTAA	3 cut(s)	507, 519, 563
TscAI	CASTG	2 cut(s)	469, 591
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	374, 467, 682
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	702
TspMI	CCCGGG	2 cut(s)	290, 359
TspRI	CASTG	2 cut(s)	469, 591
Vha464I	CTTAAG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	730
XagI	CCTNNNNNAGG	1 cut(s)	776
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	232
XmaI	CCCGGG	2 cut(s)	290, 359
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	47, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.