Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Reverse (-)

32262699 .. 32265145

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAACCATACACCGATCCACACTTCGTCTCCTTCCCATATCTCTCTCTGCACTATGCCTTACACGACCAATTACCCCGGAATCCAAAAGAATCCGACTACCCATTTCTATCCCCGGCATTCTGAACCCGAAACCGGCCTTCTTAACGAGCCACGAAAGTTACAGCTCAGCTCCTTCTCCAGTTGCCAAAGCCGGTTGGTTTCTGGGCCTCGGAGAGAAGAAGAACAAGAGCCTGGGCCTGCCCGATATAGTCAAAGCTGGAGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCTCGGGGATATTGGGTCGGAGAGGATTCAGAAGATAATTGATGATATGGTGAAGGTCATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGAGTTCCCTTAAGGATAATAGTCTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGATTGAGATTAAAGTTCAAGATAGACGGCCTTTTGATCTTTTGGTGATTATTAACCCAAAGCTTCAAAAGAAGAGCAACAGGACTGCAGTATTCTTTGAAGGCTGCTTAAGTGTTGATGGATTCAGAGCAGTGGTAGAAAGATATCTTGATGTTGAAGTTTCAGGTTTCGATCGTAATGGCCAGCCCATCAAAATAAATGCTTCTGGTTGGCAGGCTCGTATTTTGCAACATGAATGTGATCATTTGGAAGGAACTATTTATGTTGATAAGATGCTCCCAAGAACATTTAGAACAGTTGAAAACTTGGACTTGCCTCTTGCTGAGGGGTGTCCCAAGCTTGGAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

270

Amino Acids

29.9

Weight (kDa)

8.9

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	83 - 247	6.9e-51	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	640
AfiI	CCNNNNNNNGG	4 cut(s)	136, 377, 398, 800
AflII	CTTAAG	2 cut(s)	409, 568
AgsI	TTSAA	5 cut(s)	479, 527, 560, 617, 761
AjnI	CCWGG	2 cut(s)	234, 370
AluBI	AGCT	6 cut(s)	168, 173, 260, 301, 523, 799
AluI	AGCT	6 cut(s)	168, 173, 260, 301, 523, 799
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	35, 258
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	2 cut(s)	288, 302
AoxI	GGCC	6 cut(s)	138, 208, 238, 285, 488, 640
ApeKI	GCWGC	2 cut(s)	386, 564
AspS9I	GGNCC	3 cut(s)	208, 238, 286
AsuC2I	CCSGG	3 cut(s)	80, 117, 269
AsuHPI	GGTGA	2 cut(s)	361, 517
AvaI	CYCGRG	2 cut(s)	288, 302
BalI	TGGCCA	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	373, 551
BccI	CCATC	2 cut(s)	572, 656
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	2 cut(s)	236, 372
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	3 cut(s)	80, 117, 269
BcoDI	GTCTC	2 cut(s)	35, 258
BfaI	CTAG	1 cut(s)	811
BfmI	CTRYAG	1 cut(s)	546
BfrI	CTTAAG	2 cut(s)	409, 568
BisI	GCNGC	2 cut(s)	387, 565
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	2 cut(s)	388, 566
Bme1390I	CCNGG	5 cut(s)	80, 117, 236, 269, 372
BmeT110I	CYCGRG	2 cut(s)	288, 302
BmgT120I	GGNCC	3 cut(s)	208, 238, 286
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	5 cut(s)	80, 117, 236, 269, 372
BmsI	GCATC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	2 cut(s)	165, 282
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	169
BpuMI	CCSGG	3 cut(s)	80, 117, 269
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	5 cut(s)	78, 115, 211, 235, 371
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 255, 285
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 377, 398, 800
Bse118I	RCCGGY	3 cut(s)	136, 194, 283
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	236, 372
BseDI	CCNNGG	5 cut(s)	78, 115, 211, 235, 371
BseLI	CCNNNNNNNGG	4 cut(s)	136, 377, 398, 800
BseMII	CTCAG	2 cut(s)	183, 774
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	373, 551
BsgI	GTGCAG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	6 cut(s)	140, 210, 240, 287, 490, 642
BsiEI	CGRYCG	1 cut(s)	634
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	2 cut(s)	288, 302
BsiSI	CCGG	6 cut(s)	80, 117, 137, 195, 269, 284
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	4 cut(s)	136, 377, 398, 800
BsmAI	GTCTC	2 cut(s)	35, 258
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	6 cut(s)	140, 210, 240, 287, 490, 642
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	2 cut(s)	288, 302
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	4 cut(s)	17, 496, 631, 700
Bsp1720I	GCTNAGC	1 cut(s)	169
BspANI	GGCC	6 cut(s)	140, 210, 240, 287, 490, 642
BspCNI	CTCAG	2 cut(s)	182, 775
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	527
BspTI	CTTAAG	2 cut(s)	409, 568
BspTNI	GGTCTC	1 cut(s)	258
BsrFI	RCCGGY	3 cut(s)	136, 194, 283
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	3 cut(s)	136, 194, 283
BssECI	CCNNGG	5 cut(s)	78, 115, 211, 235, 371
BssMI	GATC	4 cut(s)	17, 496, 631, 700
Bst2UI	CCWGG	2 cut(s)	236, 372
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	1 cut(s)	527
BstAFI	CTTAAG	2 cut(s)	409, 568
BstC8I	GCNNGC	3 cut(s)	242, 644, 675
BstDEI	CTNAG	2 cut(s)	169, 783
BstKTI	GATC	4 cut(s)	20, 499, 634, 703
BstMAI	GTCTC	2 cut(s)	35, 258
BstMBI	GATC	4 cut(s)	17, 496, 631, 700
BstMCI	CGRYCG	1 cut(s)	634
BstNI	CCWGG	2 cut(s)	236, 372
BstSCI	CCNGG	5 cut(s)	78, 115, 234, 267, 370
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	373, 551
BsuRI	GGCC	6 cut(s)	140, 210, 240, 287, 490, 642
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	3 cut(s)	242, 644, 675
CciI	TCATGA	1 cut(s)	357
Cfr10I	RCCGGY	3 cut(s)	136, 194, 283
Cfr13I	GGNCC	3 cut(s)	208, 238, 286
CviAII	CATG	2 cut(s)	358, 692
DdeI	CTNAG	2 cut(s)	169, 783
DpnI	GATC	4 cut(s)	19, 498, 633, 702
DpnII	GATC	4 cut(s)	17, 496, 631, 700
EaeI	YGGCCR	1 cut(s)	640
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	2 cut(s)	288, 302
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	234, 370
EcoRV	GATATC	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	361, 695
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	2 cut(s)	357, 691
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	387, 565
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	387, 565
FspBI	CTAG	1 cut(s)	811
GluI	GCNGC	2 cut(s)	387, 565
GsuI	CTGGAG	2 cut(s)	165, 282
HaeIII	GGCC	6 cut(s)	140, 210, 240, 287, 490, 642
HapII	CCGG	6 cut(s)	80, 117, 137, 195, 269, 284
Hin1II	CATG	2 cut(s)	361, 695
HindIII	AAGCTT	2 cut(s)	521, 797
HinfI	GANTC	4 cut(s)	83, 93, 325, 582
HpaII	CCGG	6 cut(s)	80, 117, 137, 195, 269, 284
HphI	GGTGA	2 cut(s)	361, 517
Hpy188I	TCNGA	6 cut(s)	98, 126, 215, 319, 330, 587
Hpy188III	TCNNGA	3 cut(s)	358, 479, 608
HpyAV	CCTTC	7 cut(s)	44, 151, 186, 346, 358, 554, 704
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4V	TGCA	5 cut(s)	53, 277, 455, 548, 688
HpyF3I	CTNAG	2 cut(s)	169, 783
Hsp92II	CATG	2 cut(s)	361, 695
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	17, 496, 631, 700
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	4 cut(s)	178, 373, 394, 741
Lsp1109I	GCAGC	2 cut(s)	373, 551
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	1 cut(s)	811
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	4 cut(s)	19, 498, 633, 702
MboI	GATC	4 cut(s)	17, 496, 631, 700
MboII	GAAGA	5 cut(s)	232, 235, 343, 440, 544
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	2 cut(s)	72, 336
MluNI	TGGCCA	1 cut(s)	642
MmeI	TCCRAC	2 cut(s)	121, 297
MnlI	CCTC	5 cut(s)	221, 315, 354, 778, 786
Mox20I	TGGCCA	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	5 cut(s)	146, 410, 471, 513, 569
MslI	CAYNNNNRTG	1 cut(s)	696
Msp20I	TGGCCA	1 cut(s)	642
MspCI	CTTAAG	2 cut(s)	409, 568
MspI	CCGG	6 cut(s)	80, 117, 137, 195, 269, 284
MspR9I	CCNGG	5 cut(s)	80, 117, 236, 269, 372
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	2 cut(s)	236, 372
NciI	CCSGG	3 cut(s)	80, 117, 269
NdeII	GATC	4 cut(s)	17, 496, 631, 700
NlaIII	CATG	2 cut(s)	361, 695
NlaIV	GGNNCC	1 cut(s)	369
PagI	TCATGA	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	527
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	83, 93, 325, 582
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	388, 566
Ple19I	CGATCG	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	234, 370
PspGI	CCWGG	2 cut(s)	234, 370
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	3 cut(s)	208, 238, 286
PstI	CTGCAG	1 cut(s)	550
PvuI	CGATCG	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	146, 410, 471, 513, 569
SatI	GCNGC	2 cut(s)	387, 565
Sau3AI	GATC	4 cut(s)	17, 496, 631, 700
Sau96I	GGNCC	3 cut(s)	208, 238, 286
ScrFI	CCNGG	5 cut(s)	80, 117, 236, 269, 372
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	8 cut(s)	170, 175, 262, 303, 357, 525, 628, 801
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	2 cut(s)	409, 568
SmoI	CTYRAG	2 cut(s)	409, 568
Sse9I	AATT	2 cut(s)	72, 336
SspMI	CTAG	1 cut(s)	811
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	5 cut(s)	78, 115, 234, 267, 370
TaaI	ACNGT	1 cut(s)	757
TaqI	TCGA	1 cut(s)	630
TasI	AATT	2 cut(s)	72, 336
TfiI	GAWTC	4 cut(s)	83, 93, 325, 582
Tru1I	TTAA	5 cut(s)	146, 410, 471, 513, 569
Tru9I	TTAA	5 cut(s)	146, 410, 471, 513, 569
TscAI	CASTG	1 cut(s)	597
TseI	GCWGC	2 cut(s)	386, 564
TspDTI	ATGAA	1 cut(s)	708
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	1 cut(s)	398
Vha464I	CTTAAG	2 cut(s)	409, 568
XspI	CTAG	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.