Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Reverse (-)

6069190 .. 6071873

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G081800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAAACCATATACCGATTCTCACTTCGTCTCGCCCCGATATCTCTCCCCGAAAAATGCCTCCAACCCAGAACAATCACCCCGATATTTTGGAAAACCCGAATACACTTTTCGAACCCCGGACCTCTAAACCCGGAACCGGCCTTTAACACACATTTCCCGACCCGGAAAAGCTACAGCTCAGGCTCTTCTCCAGTTGCCAAAGCGGGTTGGCTTCTGGGTCTGGGAGAGAAGAAGAAAAGCACGAGCTTGCCCGATATAGTGAAAGCGGGTGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCCAGGGGATATTGGGTCGGAGAGGATCCAGAAGATAATTGATGATATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTCGGTCTTGCTGCTCCGCAAATTGGAATTCCCTTGAGGATAATAGTTTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGGAAGAGACGGCCGCTCAAGACAGACGGCCTTTTGATCTTTTGGTGATTCTTAACCCAAAGCTTCAAAAGAAGAGCAACAGGACTGCAGTATTCTTTGAAGGATGCTTAAGTGTTGATGGATTCAGAGCAGTGGTGGAGCGAAACCTTGATGTTGAGGTTTCAGGTTTTGATCGAAATGGCCAGCCCATCAAAATAAGTGCTTCAGGTTGGCAGGCTCGGATTTTGCAGCATGAGTGTGATCATTTGGAGGGAACTCTTTATGTGGATAAGATGGTCCCTAGAACGTTTAGAACTGTTGAAAACTTGGATTTACCTCTTGCTGAGGGGTGCCCCAAGCTTGGAGGTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

274

Amino Acids

30.38

Weight (kDa)

8.97

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	798
AccBSI	CCGCTC	1 cut(s)	485
AciI	CCGC	4 cut(s)	206, 269, 401, 483
AclI	AACGTT	1 cut(s)	755
AclWI	GGATC	2 cut(s)	328, 341
AcoI	YGGCCR	2 cut(s)	480, 649
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	657
AfiI	CCNNNNNNNGG	4 cut(s)	139, 386, 407, 809
AflII	CTTAAG	1 cut(s)	577
AgsI	TTSAA	3 cut(s)	536, 569, 770
AjnI	CCWGG	2 cut(s)	310, 379
AluBI	AGCT	5 cut(s)	174, 180, 249, 532, 808
AluI	AGCT	5 cut(s)	174, 180, 249, 532, 808
Alw26I	GTCTC	2 cut(s)	35, 470
AlwI	GGATC	2 cut(s)	328, 341
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	5 cut(s)	141, 294, 480, 497, 649
ApeKI	GCWGC	2 cut(s)	395, 697
ApoI	RAATTY	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	122, 295, 745
AsuC2I	CCSGG	4 cut(s)	120, 134, 166, 278
AsuHPI	GGTGA	5 cut(s)	70, 284, 370, 376, 526
AsuII	TTCGAA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	122, 745
BaeGI	GKGCMC	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	798
BauI	CACGAG	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	382, 709
BccI	CCATC	3 cut(s)	581, 665, 736
BceAI	ACGGC	2 cut(s)	495, 512
BciT130I	CCWGG	2 cut(s)	312, 381
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	4 cut(s)	120, 134, 166, 278
BcoDI	GTCTC	2 cut(s)	35, 470
BfaI	CTAG	2 cut(s)	750, 820
BfmI	CTRYAG	2 cut(s)	175, 555
BfrI	CTTAAG	1 cut(s)	577
BisI	GCNGC	3 cut(s)	396, 483, 698
BlsI	GCNGC	3 cut(s)	397, 484, 699
Bme1390I	CCNGG	6 cut(s)	120, 134, 166, 278, 312, 381
Bme18I	GGWCC	2 cut(s)	122, 745
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	3 cut(s)	122, 295, 745
BmiI	GGNNCC	5 cut(s)	138, 335, 378, 747, 800
BmrFI	CCNGG	6 cut(s)	120, 134, 166, 278, 312, 381
BmsI	GCATC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	2 cut(s)	181, 792
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	2 cut(s)	439, 471
BpuMI	CCSGG	4 cut(s)	120, 134, 166, 278
BsaJI	CCNNGG	4 cut(s)	118, 311, 380, 468
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 386, 407, 809
Bse118I	RCCGGY	2 cut(s)	139, 292
Bse1I	ACTGG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	312, 381
BseDI	CCNNGG	4 cut(s)	118, 311, 380, 468
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	4 cut(s)	139, 386, 407, 809
BseMII	CTCAG	2 cut(s)	195, 783
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	803
BseX3I	CGGCCG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	382, 709
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	5 cut(s)	143, 296, 482, 499, 651
BshNI	GGYRCC	1 cut(s)	798
BsiEI	CGRYCG	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	6 cut(s)	120, 134, 140, 166, 278, 293
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	4 cut(s)	139, 386, 407, 809
BsmAI	GTCTC	2 cut(s)	35, 470
BsmBI	CGTCTC	2 cut(s)	35, 470
BsmFI	GGGAC	1 cut(s)	731
BsnI	GGCC	5 cut(s)	143, 296, 482, 499, 651
BsoBI	CYCGRG	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp143I	GATC	4 cut(s)	333, 505, 640, 709
BspACI	CCGC	4 cut(s)	206, 269, 401, 483
BspANI	GGCC	5 cut(s)	143, 296, 482, 499, 651
BspCNI	CTCAG	2 cut(s)	194, 784
BspLI	GGNNCC	5 cut(s)	138, 335, 378, 747, 800
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	2 cut(s)	328, 341
BspQI	GCTCTTC	2 cut(s)	193, 536
BspT104I	TTCGAA	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	798
BspTI	CTTAAG	1 cut(s)	577
BsrBI	CCGCTC	1 cut(s)	485
BsrFI	RCCGGY	2 cut(s)	139, 292
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	2 cut(s)	139, 292
BssECI	CCNNGG	4 cut(s)	118, 311, 380, 468
BssMI	GATC	4 cut(s)	333, 505, 640, 709
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	312, 381
Bst4CI	ACNGT	1 cut(s)	766
Bst6I	CTCTTC	3 cut(s)	193, 468, 536
BstAFI	CTTAAG	1 cut(s)	577
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	251, 653, 684
BstDEI	CTNAG	2 cut(s)	181, 792
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	578
BstKTI	GATC	4 cut(s)	336, 508, 643, 712
BstMAI	GTCTC	2 cut(s)	35, 470
BstMBI	GATC	4 cut(s)	333, 505, 640, 709
BstMCI	CGRYCG	1 cut(s)	483
BstNI	CCWGG	2 cut(s)	312, 381
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	6 cut(s)	118, 132, 164, 276, 310, 379
BstSFI	CTRYAG	2 cut(s)	175, 555
BstSLI	GKGCMC	1 cut(s)	803
BstV1I	GCAGC	2 cut(s)	382, 709
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BstZI	CGGCCG	1 cut(s)	480
BsuRI	GGCC	5 cut(s)	143, 296, 482, 499, 651
BtsCI	GGATG	1 cut(s)	578
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	3 cut(s)	251, 653, 684
Cfr10I	RCCGGY	2 cut(s)	139, 292
Cfr13I	GGNCC	3 cut(s)	122, 295, 745
CviAII	CATG	1 cut(s)	701
DdeI	CTNAG	2 cut(s)	181, 792
DpnI	GATC	4 cut(s)	335, 507, 642, 711
DpnII	GATC	4 cut(s)	333, 505, 640, 709
EaeI	YGGCCR	2 cut(s)	480, 649
EagI	CGGCCG	1 cut(s)	480
Eam1104I	CTCTTC	3 cut(s)	193, 468, 536
EarI	CTCTTC	3 cut(s)	193, 468, 536
EclXI	CGGCCG	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	122, 745
Eco52I	CGGCCG	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	310, 379
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	2 cut(s)	35, 470
FaeI	CATG	1 cut(s)	704
FaiI	YATR	8 cut(s)	11, 13, 260, 356, 453, 462, 702, 732
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	1 cut(s)	700
FauI	CCCGC	2 cut(s)	199, 262
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	396, 483, 698
FokI	GGATG	1 cut(s)	585
Fsp4HI	GCNGC	3 cut(s)	396, 483, 698
FspBI	CTAG	2 cut(s)	750, 820
GluI	GCNGC	3 cut(s)	396, 483, 698
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	5 cut(s)	143, 296, 482, 499, 651
HapII	CCGG	6 cut(s)	120, 134, 140, 166, 278, 293
Hin1II	CATG	1 cut(s)	704
HindIII	AAGCTT	2 cut(s)	530, 806
HinfI	GANTC	3 cut(s)	18, 517, 591
HpaII	CCGG	6 cut(s)	120, 134, 140, 166, 278, 293
HphI	GGTGA	5 cut(s)	70, 284, 370, 376, 526
Hpy188I	TCNGA	3 cut(s)	328, 596, 690
Hpy188III	TCNNGA	3 cut(s)	160, 337, 488
HpyAV	CCTTC	3 cut(s)	355, 367, 563
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	4 cut(s)	286, 464, 557, 697
HpyF3I	CTNAG	2 cut(s)	181, 792
HpySE526I	ACGT	1 cut(s)	755
Hsp92II	CATG	1 cut(s)	704
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	4 cut(s)	333, 505, 640, 709
LguI	GCTCTTC	2 cut(s)	193, 536
LmnI	GCTCC	3 cut(s)	382, 403, 607
Lsp1109I	GCAGC	2 cut(s)	382, 709
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	2 cut(s)	750, 820
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	4 cut(s)	335, 507, 642, 711
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	4 cut(s)	333, 505, 640, 709
MboII	GAAGA	7 cut(s)	180, 244, 247, 352, 449, 485, 553
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	803
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	3 cut(s)	345, 405, 411
MluNI	TGGCCA	1 cut(s)	651
MmeI	TCCRAC	2 cut(s)	88, 306
Mox20I	TGGCCA	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	3 cut(s)	147, 522, 578
MslI	CAYNNNNRTG	1 cut(s)	705
Msp20I	TGGCCA	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	577
MspI	CCGG	6 cut(s)	120, 134, 140, 166, 278, 293
MspR9I	CCNGG	6 cut(s)	120, 134, 166, 278, 312, 381
MvaI	CCWGG	2 cut(s)	312, 381
NciI	CCSGG	4 cut(s)	120, 134, 166, 278
NdeII	GATC	4 cut(s)	333, 505, 640, 709
NlaIII	CATG	1 cut(s)	704
NlaIV	GGNNCC	5 cut(s)	138, 335, 378, 747, 800
NmuCI	GTSAC	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	193, 536
PfeI	GAWTC	3 cut(s)	18, 517, 591
PkrI	GCNGC	3 cut(s)	397, 484, 699
Psp1406I	AACGTT	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	310, 379
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	310, 379
PspN4I	GGNNCC	5 cut(s)	138, 335, 378, 747, 800
PspPI	GGNCC	3 cut(s)	122, 295, 745
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	705
SapI	GCTCTTC	2 cut(s)	193, 536
SaqAI	TTAA	3 cut(s)	147, 522, 578
SatI	GCNGC	3 cut(s)	396, 483, 698
Sau3AI	GATC	4 cut(s)	333, 505, 640, 709
Sau96I	GGNCC	3 cut(s)	122, 295, 745
ScrFI	CCNGG	6 cut(s)	120, 134, 166, 278, 312, 381
SduI	GDGCHC	1 cut(s)	803
SfaNI	GCATC	1 cut(s)	563
SfcI	CTRYAG	2 cut(s)	175, 555
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	2 cut(s)	122, 745
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	3 cut(s)	418, 486, 577
SmoI	CTYRAG	3 cut(s)	418, 486, 577
Sse9I	AATT	3 cut(s)	345, 405, 411
SsiI	CCGC	4 cut(s)	206, 269, 401, 483
SspMI	CTAG	2 cut(s)	750, 820
StyD4I	CCNGG	6 cut(s)	118, 132, 164, 276, 310, 379
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	766
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	2 cut(s)	113, 643
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	3 cut(s)	345, 405, 411
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	3 cut(s)	18, 517, 591
Tru1I	TTAA	3 cut(s)	147, 522, 578
Tru9I	TTAA	3 cut(s)	147, 522, 578
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	395, 697
Tsp45I	GTSAC	1 cut(s)	272
TspRI	CASTG	1 cut(s)	606
Vha464I	CTTAAG	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	122, 745
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	2 cut(s)	750, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.