Rorug02G0330100

Removes the formyl group from the N-terminal Met of newly synthesized proteins

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
40722124 .. 40725407
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0330100.1

Sequence Viewer

Length: 1254 bp
ATGAGGCGGACGCTGCTGAGAAATGTCTCTCTCTACGCTCGCAACCGCCTCGTCTCCCCAAAACCTAGCCCTACTTCTTCACTCGCCGCTTCCGCCAGGCTCTTCTCCTCCGACAAAAACGACTCGTCGTCTCCCAATGACTCGCCCCCAGAAAGCTCCAATCCCTCTCCTGAGTCGCGCCTCACCCAAGTCTTGAAGAAGGACTCCTCCATTCAACTCGAGGACATCAGTAACAAAGAACTGAAAACAAGAATGGAGGAATACTTGAAGGAAGGTAAGGAGGAGGCTCTGCCATCGATACTCGAAGCGATTCTGCAGAGGAAATTGGCTGGGAAGCATGAGGACACGGATGATGAATTGGTGGATGATCTGCAAATGCAGCCATTGGAGAACGTTAAGGACCAAGAGTTTGAATCTGATTTCGAAGAAATCCACGACACCGATGAAGAGATTGATGACTTGTATGATGCCAAGGATGTAGTGGTGAAGAAGATGGTGAAGGATGAGTTCTTCAATATGGATGACAAAAAGTGGGATGGTATTGTTCAGGATGCGATCAAGCACGGGATTATGAAGGATATGAGAGAGTGTGAGGAAGTTCTTGAGGATATGCTTAGCTGGGACAAGCTCTTGCCAGATGACATTAAGAAGAAGGTAGAAGAGAAGTTCAATGACCTAGGGGATAGGTGTGAAAGAGGGGAGCTTGAACCTGAAGATGCTTACAAGTTGTTTAAGGAGTTTGAGGACGAGATTGTCATGGAATATACGAAAAAGGTGGAAGCTCAGGATCCCTCACAATTTGACGAGATAGTTGTACCGGACATGAAAAGAGACATAGATGACCCACCGGGTGAAGGGCCAATCCTTAGGTGGCAAACACGAGTGGTCTTTGCTCCTGGTGGTGATGCTTGGCATCCAAAGAATAGAAAAGTGAAGCTGTCTGTTACGGTGAAAGAACTCGGGCTTTCAAAGCATCAATTCCGTCGGCTCAGAGAATTGGTTGGAAAGCGATACAATCCAGGGAAAGATGAGCTCACTATTACTAGTGAGAGGTTTGAACACCGAGAGGAAAATAGAAAGGATTGCCTTAGGACTCTTCTTTCCCTCATTGAGGAGGCTGAGAAAGCTAACAAGCTGGCTGAGGATGCTAGAGTTTTGTATGTCAAGGAGAGATTAAGAGAAAATCCTGCATTCATGGAGAGACTGCGTAACAAGACAATGAGATTGCAAGGACATACCACAGTGACAGCTTGA

Protein Analysis

417

Amino Acids

48.47

Weight (kDa)

4.99

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S28 PF10213 303 - 382 1e-17 Mitochondrial ribosomal subunit protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011241)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 752
AccII CGCG 1 cut(s) 178
AciI CCGC 4 cut(s) 7, 46, 87, 93
AclI AACGTT 1 cut(s) 393
AclWI GGATC 2 cut(s) 782, 795
AcuI CTGAAG 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 1 cut(s) 816
AfiI CCNNNNNNNGG 2 cut(s) 854, 1111
AgsI TTSAA 9 cut(s) 196, 215, 268, 413, 514, 670, 707, 969, 1058
AhdI GACNNNNNGTC 1 cut(s) 127
AhlI ACTAGT 1 cut(s) 1043
AjnI CCWGG 3 cut(s) 95, 895, 1018
Alw21I GWGCWC 1 cut(s) 1035
Alw26I GTCTC 5 cut(s) 31, 58, 135, 825, 1195
AlwI GGATC 2 cut(s) 782, 795
Ama87I CYCGRG 2 cut(s) 218, 959
AoxI GGCC 1 cut(s) 857
ApeKI GCWGC 2 cut(s) 13, 379
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp700I GAANNNNTTC 1 cut(s) 309
AspA2I CCTAGG 1 cut(s) 676
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 400, 857
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 6 cut(s) 175, 496, 508, 863, 914, 961
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 2 cut(s) 218, 959
AvaII GGWCC 1 cut(s) 400
AvrII CCTAGG 1 cut(s) 676
AxyI CCTNAGG 2 cut(s) 866, 1088
BamHI GGATCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 1035
BauI CACGAG 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 1035
BbvCI CCTCAGC 1 cut(s) 1140
BbvI GCAGC 1 cut(s) 391
BccI CCATC 3 cut(s) 301, 487, 530
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 3 cut(s) 97, 897, 1020
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 5 cut(s) 31, 58, 135, 825, 1195
BcuI ACTAGT 1 cut(s) 1043
BfaI CTAG 4 cut(s) 66, 677, 1044, 1149
BfmI CTRYAG 1 cut(s) 314
BisI GCNGC 3 cut(s) 14, 87, 380
BlnI CCTAGG 1 cut(s) 676
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 3 cut(s) 15, 88, 381
Bme1390I CCNGG 4 cut(s) 97, 849, 897, 1020
Bme18I GGWCC 1 cut(s) 400
BmeRI GACNNNNNGTC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 218, 959
BmgT120I GGNCC 2 cut(s) 400, 857
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 4 cut(s) 97, 849, 897, 1020
BmsI GCATC 7 cut(s) 457, 541, 706, 895, 922, 982, 1135
Bpu10I CCTNAGC 2 cut(s) 783, 1140
Bpu1102I GCTNAGC 1 cut(s) 614
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 849
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 471, 676, 1019
BsaWI WCCGGW 1 cut(s) 817
Bsc4I CCNNNNNNNGG 2 cut(s) 854, 1111
Bse21I CCTNAGG 2 cut(s) 866, 1088
BseBI CCWGG 3 cut(s) 97, 897, 1020
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 471, 676, 1019
BseGI GGATG 9 cut(s) 355, 370, 481, 508, 526, 541, 556, 913, 1150
BseLI CCNNNNNNNGG 2 cut(s) 854, 1111
BseMII CTCAG 6 cut(s) 8, 162, 797, 1003, 1110, 1131
BseRI GAGGAG 4 cut(s) 97, 196, 296, 1127
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 2 cut(s) 329, 618
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 1 cut(s) 859
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 1035
BsiHKCI CYCGRG 2 cut(s) 218, 959
BsiSI CCGG 2 cut(s) 818, 848
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 854, 1111
BsmAI GTCTC 5 cut(s) 31, 58, 135, 825, 1195
BsmBI CGTCTC 2 cut(s) 58, 135
BsmFI GGGAC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 1190
BsnI GGCC 1 cut(s) 859
BsoBI CYCGRG 2 cut(s) 218, 959
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 1035
Bsp143I GATC 3 cut(s) 367, 555, 787
Bsp1720I GCTNAGC 1 cut(s) 614
BspACI CCGC 4 cut(s) 7, 46, 87, 93
BspANI GGCC 1 cut(s) 859
BspCNI CTCAG 6 cut(s) 9, 163, 796, 1002, 1111, 1132
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 789
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 2 cut(s) 782, 795
BspQI GCTCTTC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 423
BssECI CCNNGG 3 cut(s) 471, 676, 1019
BssMI GATC 3 cut(s) 367, 555, 787
BssSI CACGAG 1 cut(s) 879
BssT1I CCWWGG 2 cut(s) 471, 676
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 3 cut(s) 97, 897, 1020
Bst4CI ACNGT 2 cut(s) 949, 1243
Bst6I CTCTTC 4 cut(s) 107, 441, 654, 1101
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 40, 1137
BstDEI CTNAG 9 cut(s) 17, 171, 614, 783, 866, 989, 1088, 1119, 1140
BstENI CCTNNNNNAGG 1 cut(s) 1109
BstF5I GGATG 9 cut(s) 355, 370, 481, 508, 526, 541, 556, 913, 1150
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 370, 558, 790
BstMAI GTCTC 5 cut(s) 31, 58, 135, 825, 1195
BstMBI GATC 3 cut(s) 367, 555, 787
BstMWI GCNNNNNNNGC 6 cut(s) 13, 92, 379, 970, 1124, 1145
BstNI CCWGG 3 cut(s) 97, 897, 1020
BstSCI CCNGG 4 cut(s) 95, 847, 895, 1018
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
Bsu15I ATCGAT 1 cut(s) 296
Bsu36I CCTNAGG 2 cut(s) 866, 1088
BsuRI GGCC 1 cut(s) 859
BsuTUI ATCGAT 1 cut(s) 296
BtsCI GGATG 9 cut(s) 355, 370, 481, 508, 526, 541, 556, 913, 1150
BtsIMutI CAGTG 1 cut(s) 1248
Cac8I GCNNGC 2 cut(s) 40, 1137
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 400, 857
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 815
CviAII CATG 4 cut(s) 338, 757, 823, 1195
CviQI GTAC 1 cut(s) 815
DdeI CTNAG 9 cut(s) 17, 171, 614, 783, 866, 989, 1088, 1119, 1140
DpnI GATC 3 cut(s) 369, 557, 789
DpnII GATC 3 cut(s) 367, 555, 787
DraIII CACNNNGTG 1 cut(s) 851
DrdI GACNNNNNNGTC 1 cut(s) 752
DriI GACNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 752
Eam1104I CTCTTC 4 cut(s) 107, 441, 654, 1101
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 4 cut(s) 107, 441, 654, 1101
EciI GGCGGA 2 cut(s) 22, 82
Ecl136II GAGCTC 1 cut(s) 1033
Eco130I CCWWGG 2 cut(s) 471, 676
Eco24I GRGCYC 1 cut(s) 1035
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 1 cut(s) 1033
Eco57I CTGAAG 1 cut(s) 732
Eco81I CCTNAGG 2 cut(s) 866, 1088
Eco88I CYCGRG 2 cut(s) 218, 959
EcoICRI GAGCTC 1 cut(s) 1033
EcoNI CCTNNNNNAGG 1 cut(s) 1109
EcoRII CCWGG 3 cut(s) 95, 895, 1018
EcoT14I CCWWGG 2 cut(s) 471, 676
EcoT38I GRGCYC 1 cut(s) 1035
ErhI CCWWGG 2 cut(s) 471, 676
Esp3I CGTCTC 2 cut(s) 58, 135
FaeI CATG 4 cut(s) 341, 760, 826, 1198
FaqI GGGAC 1 cut(s) 635
FatI CATG 4 cut(s) 337, 756, 822, 1194
Fnu4HI GCNGC 3 cut(s) 14, 87, 380
FokI GGATG 9 cut(s) 362, 377, 488, 515, 533, 548, 563, 900, 1157
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 3 cut(s) 14, 87, 380
FspBI CTAG 4 cut(s) 66, 677, 1044, 1149
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 14, 87, 380
GsaI CCCAGC 2 cut(s) 333, 622
HaeIII GGCC 1 cut(s) 859
HapII CCGG 2 cut(s) 818, 848
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 180
Hin1II CATG 4 cut(s) 341, 760, 826, 1198
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 7 cut(s) 122, 140, 173, 203, 310, 413, 1093
HpaII CCGG 2 cut(s) 818, 848
HphI GGTGA 6 cut(s) 175, 496, 508, 863, 914, 961
Hpy188I TCNGA 3 cut(s) 112, 418, 992
Hpy188III TCNNGA 5 cut(s) 170, 193, 548, 602, 785
Hpy99I CGWCG 2 cut(s) 130, 987
HpyAV CCTTC 7 cut(s) 193, 262, 266, 493, 568, 646, 848
HpyCH4III ACNGT 2 cut(s) 949, 1243
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 316, 373, 379, 1190, 1228
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 92, 379, 970, 1124, 1145
HpyF3I CTNAG 9 cut(s) 17, 171, 614, 783, 866, 989, 1088, 1119, 1140
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 4 cut(s) 341, 760, 826, 1198
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 367, 555, 787
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 3 cut(s) 161, 700, 898
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 7 cut(s) 457, 541, 706, 895, 922, 982, 1135
MaeI CTAG 4 cut(s) 66, 677, 1044, 1149
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 4 cut(s) 230, 943, 1208, 1243
MalI GATC 3 cut(s) 369, 557, 789
MboI GATC 3 cut(s) 367, 555, 787
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 1035
MluCI AATT 5 cut(s) 323, 356, 797, 977, 995
MlyI GAGTC 5 cut(s) 116, 134, 182, 197, 1087
MmeI TCCRAC 2 cut(s) 135, 982
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 4 cut(s) 396, 645, 732, 1175
MspI CCGG 2 cut(s) 818, 848
MspR9I CCNGG 4 cut(s) 97, 849, 897, 1020
Mva1269I GAATGC 1 cut(s) 1190
MvaI CCWGG 3 cut(s) 97, 897, 1020
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 6 cut(s) 13, 92, 379, 970, 1124, 1145
NciI CCSGG 1 cut(s) 849
NdeII GATC 3 cut(s) 367, 555, 787
NlaIII CATG 4 cut(s) 341, 760, 826, 1198
NlaIV GGNNCC 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 1243
NspV TTCGAA 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 1190
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 310, 413
PkrI GCNGC 3 cut(s) 15, 88, 381
PleI GAGTC 5 cut(s) 116, 134, 181, 197, 1087
PpsI GAGTC 5 cut(s) 116, 134, 181, 197, 1087
Psp124BI GAGCTC 1 cut(s) 1035
Psp1406I AACGTT 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 95, 895, 1018
PspFI CCCAGC 2 cut(s) 329, 618
PspGI CCWGG 3 cut(s) 95, 895, 1018
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 2 cut(s) 400, 857
PspXI VCTCGAGB 1 cut(s) 218
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 1 cut(s) 787
RsaI GTAC 1 cut(s) 816
RsaNI GTAC 1 cut(s) 815
SacI GAGCTC 1 cut(s) 1035
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 4 cut(s) 396, 645, 732, 1175
SatI GCNGC 3 cut(s) 14, 87, 380
Sau3AI GATC 3 cut(s) 367, 555, 787
Sau96I GGNCC 2 cut(s) 400, 857
SchI GAGTC 5 cut(s) 116, 134, 182, 197, 1087
ScrFI CCNGG 4 cut(s) 97, 849, 897, 1020
SduI GDGCHC 1 cut(s) 1035
SfaNI GCATC 7 cut(s) 457, 541, 706, 895, 922, 982, 1135
SfcI CTRYAG 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 400
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 218, 602
SmoI CTYRAG 2 cut(s) 218, 602
SpeI ACTAGT 1 cut(s) 1043
Sse9I AATT 5 cut(s) 323, 356, 797, 977, 995
SsiI CCGC 4 cut(s) 7, 46, 87, 93
SspMI CTAG 4 cut(s) 66, 677, 1044, 1149
SstI GAGCTC 1 cut(s) 1035
StyD4I CCNGG 4 cut(s) 95, 847, 895, 1018
StyI CCWWGG 2 cut(s) 471, 676
TaaI ACNGT 2 cut(s) 949, 1243
TaiI ACGT 1 cut(s) 396
TaqI TCGA 4 cut(s) 219, 296, 303, 423
TasI AATT 5 cut(s) 323, 356, 797, 977, 995
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 310, 413
Tru1I TTAA 4 cut(s) 396, 645, 732, 1175
Tru9I TTAA 4 cut(s) 396, 645, 732, 1175
TscAI CASTG 1 cut(s) 1248
TseFI GTSAC 1 cut(s) 1243
TseI GCWGC 2 cut(s) 13, 379
Tsp45I GTSAC 1 cut(s) 1243
TspDTI ATGAA 5 cut(s) 369, 459, 587, 839, 1183
TspGWI ACGGA 2 cut(s) 362, 971
TspRI CASTG 1 cut(s) 1248
VpaK11BI GGWCC 1 cut(s) 400
XagI CCTNNNNNAGG 1 cut(s) 1109
XcmI CCANNNNNNNNNTGG 2 cut(s) 478, 867
XhoI CTCGAG 1 cut(s) 218
XmaJI CCTAGG 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 4 cut(s) 66, 677, 1044, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.