RchiOBHm_Chr2g0136431

Removes the formyl group from the N-terminal Met of newly synthesized proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011241
Physical Location & Seq
Forward (+)
53832442 .. 53835232
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50722

Sequence Viewer

Length: 813 bp
ATGGAAACCATCCACCGATCCACACTTCGTCTCCTTCCCATATCTCTCTCTGCACTATGCCTTACACGACCAACCGCCCCGGAATCCAAAAGAATCCGACTACCCATTTCTATCCCCGGCATTCTAAACCCGAAACCGGCCTTCTTAACGAGCCGCAAAAGTTACAGCTCAGCTCCTTCTCCAGTTGCCAAAGCTGGTTGGTTTCTGGGCCTCGGAGAGAAGAAGAACAAGAGCCTGAGCCTGCCCGATATAGTCAAAGCTGGAGACCCGGTTTTGCACGAGCCGGCCCGAGATGTTGAGCTCGGGGATATTGGGTCGGAGAGGATTCAGAAGATAATTGATGATATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGACTTCCCTTAAGGATAATAGTCTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGGATGAGATTAAAGTTCAACAGAGACGGCCTTTCGATCTTTTGGTGATTATTAACCCAAAGCTTCAAAAGAAGAGCAACAGGACTGCCGTATTCTTTGAAGGCTGCTTAAGTGTTGATGGATTCAGAGCAGTGGTAGAAAGATATCTGGATGTCGAAGTTTCAGGTTTCGATCGTAGTGGCCAGCCCATCAAAATAAATGCTTCAGGTTGGCAGGCTCGTATTTTGCAACATGAGTGTGATCATTTGGAAGGAACTATATATGTTGATAAGATGCTCCCTAGAACATTTAGAACAGTTGAAAACTTGGACTTGCCTCTTGCTGAGGGGTGTCCAAAGCTTGGAAGTTGCTAG

Protein Analysis

270

Amino Acids

29.91

Weight (kDa)

9.25

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep_deformylase PF01327 83 - 247 2.8e-50 Polypeptide deformylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15390
fragaria_vesca FvH4_6g30190
malus_domestica MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis pycom17g21000
rosa_chinensis RchiOBHm_Chr2g0136431
rosa_laevigata RLG00000019530
rosa_multiflora Rmu_sc0001998.1_g000005
rosa_roxburghii Rroxscaffold_2G00108300
rosa_rugosa Rorug02G0330100
rosa_samantha Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 398, 800
AciI CCGC 2 cut(s) 75, 154
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 640
AcuI CTGAAG 1 cut(s) 648
AfiI CCNNNNNNNGG 4 cut(s) 136, 377, 398, 800
AflII CTTAAG 2 cut(s) 409, 568
AgsI TTSAA 4 cut(s) 479, 527, 560, 761
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 7 cut(s) 168, 173, 194, 260, 301, 523, 799
AluI AGCT 7 cut(s) 168, 173, 194, 260, 301, 523, 799
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 3 cut(s) 35, 258, 478
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 288, 302
AoxI GGCC 5 cut(s) 138, 208, 285, 488, 640
ApeKI GCWGC 2 cut(s) 386, 564
AspS9I GGNCC 2 cut(s) 208, 286
AsuC2I CCSGG 3 cut(s) 80, 117, 269
AsuHPI GGTGA 3 cut(s) 361, 367, 517
AvaI CYCGRG 2 cut(s) 288, 302
BalI TGGCCA 1 cut(s) 642
BanII GRGCYC 1 cut(s) 303
BauI CACGAG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 783
BbvI GCAGC 2 cut(s) 373, 551
BccI CCATC 3 cut(s) 17, 572, 656
BceAI ACGGC 2 cut(s) 503, 533
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 3 cut(s) 80, 117, 269
BcoDI GTCTC 3 cut(s) 35, 258, 478
BfaI CTAG 2 cut(s) 741, 811
BfrI CTTAAG 2 cut(s) 409, 568
BisI GCNGC 3 cut(s) 154, 387, 565
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 3 cut(s) 155, 388, 566
Bme1390I CCNGG 4 cut(s) 80, 117, 269, 372
BmeT110I CYCGRG 2 cut(s) 288, 302
BmgT120I GGNCC 2 cut(s) 208, 286
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 4 cut(s) 80, 117, 269, 372
BmsI GCATC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 352, 384
BpmI CTGGAG 2 cut(s) 165, 282
Bpu10I CCTNAGC 2 cut(s) 236, 783
Bpu1102I GCTNAGC 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 80, 117, 269
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 5 cut(s) 78, 115, 211, 371, 459
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 255, 285
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 377, 398, 800
Bse118I RCCGGY 2 cut(s) 136, 283
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 78, 115, 211, 371, 459
BseGI GGATG 3 cut(s) 9, 469, 616
BseLI CCNNNNNNNGG 4 cut(s) 136, 377, 398, 800
BseMII CTCAG 3 cut(s) 183, 227, 774
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 373, 551
BsgI GTGCAG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 634
BshFI GGCC 5 cut(s) 140, 210, 287, 490, 642
BsiEI CGRYCG 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 2 cut(s) 288, 302
BsiSI CCGG 5 cut(s) 80, 117, 137, 269, 284
BslI CCNNNNNNNGG 4 cut(s) 136, 377, 398, 800
BsmAI GTCTC 3 cut(s) 35, 258, 478
BsmBI CGTCTC 2 cut(s) 35, 478
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 5 cut(s) 140, 210, 287, 490, 642
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 2 cut(s) 288, 302
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 4 cut(s) 17, 496, 631, 700
Bsp1720I GCTNAGC 1 cut(s) 169
BspACI CCGC 2 cut(s) 75, 154
BspANI GGCC 5 cut(s) 140, 210, 287, 490, 642
BspCNI CTCAG 3 cut(s) 182, 228, 775
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 527
BspTI CTTAAG 2 cut(s) 409, 568
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 136, 283
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 2 cut(s) 136, 283
BssECI CCNNGG 5 cut(s) 78, 115, 211, 371, 459
BssMI GATC 4 cut(s) 17, 496, 631, 700
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 757
Bst6I CTCTTC 1 cut(s) 527
BstAFI CTTAAG 2 cut(s) 409, 568
BstC8I GCNNGC 4 cut(s) 242, 285, 644, 675
BstDEI CTNAG 3 cut(s) 169, 236, 783
BstF5I GGATG 3 cut(s) 9, 469, 616
BstKTI GATC 4 cut(s) 20, 499, 634, 703
BstMAI GTCTC 3 cut(s) 35, 258, 478
BstMBI GATC 4 cut(s) 17, 496, 631, 700
BstMCI CGRYCG 1 cut(s) 634
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 4 cut(s) 78, 115, 267, 370
BstV1I GCAGC 2 cut(s) 373, 551
BsuRI GGCC 5 cut(s) 140, 210, 287, 490, 642
BtsCI GGATG 3 cut(s) 9, 469, 616
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 4 cut(s) 242, 285, 644, 675
Cfr10I RCCGGY 2 cut(s) 136, 283
Cfr13I GGNCC 2 cut(s) 208, 286
CviAII CATG 1 cut(s) 692
DdeI CTNAG 3 cut(s) 169, 236, 783
DpnI GATC 4 cut(s) 19, 498, 633, 702
DpnII GATC 4 cut(s) 17, 496, 631, 700
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 2 cut(s) 288, 302
EcoICRI GAGCTC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 2 cut(s) 35, 478
FaeI CATG 1 cut(s) 695
FatI CATG 1 cut(s) 691
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 3 cut(s) 154, 387, 565
FokI GGATG 2 cut(s) 476, 623
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 154, 387, 565
FspBI CTAG 2 cut(s) 741, 811
GluI GCNGC 3 cut(s) 154, 387, 565
GsuI CTGGAG 2 cut(s) 165, 282
HaeIII GGCC 5 cut(s) 140, 210, 287, 490, 642
HapII CCGG 5 cut(s) 80, 117, 137, 269, 284
Hin1II CATG 1 cut(s) 695
HindIII AAGCTT 2 cut(s) 521, 797
HinfI GANTC 4 cut(s) 83, 93, 325, 582
HpaII CCGG 5 cut(s) 80, 117, 137, 269, 284
HphI GGTGA 3 cut(s) 361, 367, 517
Hpy188I TCNGA 5 cut(s) 98, 215, 319, 330, 587
Hpy188III TCNNGA 1 cut(s) 608
HpyAV CCTTC 7 cut(s) 44, 151, 186, 346, 358, 554, 704
HpyCH4III ACNGT 1 cut(s) 757
HpyCH4V TGCA 4 cut(s) 53, 277, 455, 688
HpyF3I CTNAG 3 cut(s) 169, 236, 783
Hsp92II CATG 1 cut(s) 695
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 4 cut(s) 17, 496, 631, 700
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 4 cut(s) 178, 373, 394, 741
Lsp1109I GCAGC 2 cut(s) 373, 551
LweI GCATC 1 cut(s) 723
MaeI CTAG 2 cut(s) 741, 811
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 19, 498, 633, 702
MboI GATC 4 cut(s) 17, 496, 631, 700
MboII GAAGA 5 cut(s) 232, 235, 343, 440, 544
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 1 cut(s) 336
MluNI TGGCCA 1 cut(s) 642
MmeI TCCRAC 2 cut(s) 121, 297
MnlI CCTC 5 cut(s) 221, 315, 354, 778, 786
Mox20I TGGCCA 1 cut(s) 642
MroNI GCCGGC 1 cut(s) 283
MscI TGGCCA 1 cut(s) 642
MseI TTAA 5 cut(s) 146, 410, 471, 513, 569
MslI CAYNNNNRTG 1 cut(s) 696
Msp20I TGGCCA 1 cut(s) 642
MspCI CTTAAG 2 cut(s) 409, 568
MspI CCGG 5 cut(s) 80, 117, 137, 269, 284
MspR9I CCNGG 4 cut(s) 80, 117, 269, 372
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 372
NaeI GCCGGC 1 cut(s) 285
NciI CCSGG 3 cut(s) 80, 117, 269
NdeII GATC 4 cut(s) 17, 496, 631, 700
NgoMIV GCCGGC 1 cut(s) 283
NlaIII CATG 1 cut(s) 695
NlaIV GGNNCC 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 527
PctI GAATGC 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 285
PfeI GAWTC 4 cut(s) 83, 93, 325, 582
PflMI CCANNNNNTGG 2 cut(s) 398, 800
PkrI GCNGC 3 cut(s) 155, 388, 566
Ple19I CGATCG 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 208, 286
PvuI CGATCG 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 696
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 5 cut(s) 146, 410, 471, 513, 569
SatI GCNGC 3 cut(s) 154, 387, 565
Sau3AI GATC 4 cut(s) 17, 496, 631, 700
Sau96I GGNCC 2 cut(s) 208, 286
ScrFI CCNGG 4 cut(s) 80, 117, 269, 372
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 1 cut(s) 723
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 409, 568
SmoI CTYRAG 2 cut(s) 409, 568
Sse9I AATT 1 cut(s) 336
SsiI CCGC 2 cut(s) 75, 154
SspMI CTAG 2 cut(s) 741, 811
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 4 cut(s) 78, 115, 267, 370
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 757
TaqI TCGA 3 cut(s) 495, 615, 630
TasI AATT 1 cut(s) 336
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 4 cut(s) 83, 93, 325, 582
Tru1I TTAA 5 cut(s) 146, 410, 471, 513, 569
Tru9I TTAA 5 cut(s) 146, 410, 471, 513, 569
TscAI CASTG 1 cut(s) 597
TseI GCWGC 2 cut(s) 386, 564
TspRI CASTG 1 cut(s) 597
Van91I CCANNNNNTGG 2 cut(s) 398, 800
Vha464I CTTAAG 2 cut(s) 409, 568
XspI CTAG 2 cut(s) 741, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.