Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Reverse (-)

25016370 .. 25016567

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1207400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGCCCGATATAGTGAAAGCAGGTGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCCCGGGGATATTGGGTCGGAGAGGATCCAGAAGATAATTGATGATATGGTGAGGGTGATGCGGAAGGCTCCTGGGGTCGGTCTTGCCGCTCCTCAGATTGGAATTCCCTTGAGGGTCAGTTTTGGTATTTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

66

Amino Acids

6.94

Weight (kDa)

5.63

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	3 - 59	2.2e-16	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	149
AciI	CCGC	2 cut(s)	121, 147
AclWI	GGATC	2 cut(s)	79, 92
AcsI	RAATTY	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	137, 158
AjnI	CCWGG	1 cut(s)	130
AlwI	GGATC	2 cut(s)	79, 92
Ama87I	CYCGRG	2 cut(s)	48, 62
AoxI	GGCC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	3 cut(s)	29, 63, 64
AsuHPI	GGTGA	3 cut(s)	35, 121, 127
AvaI	CYCGRG	2 cut(s)	48, 62
BamHI	GGATCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	3 cut(s)	29, 63, 64
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	4 cut(s)	29, 63, 64, 132
BmeT110I	CYCGRG	2 cut(s)	48, 62
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	86, 129
BmrFI	CCNGG	4 cut(s)	29, 63, 64, 132
BmsI	GCATC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	3 cut(s)	29, 63, 64
BsaJI	CCNNGG	3 cut(s)	62, 63, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 158
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	62, 63, 131
BseLI	CCNNNNNNNGG	2 cut(s)	137, 158
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	48, 62
BsiSI	CCGG	3 cut(s)	29, 44, 63
BslI	CCNNNNNNNGG	2 cut(s)	137, 158
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	2 cut(s)	48, 62
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	121, 147
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	86, 129
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	79, 92
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	62, 63, 131
BssMI	GATC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	4 cut(s)	27, 61, 62, 130
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	46
Cfr9I	CCCGGG	1 cut(s)	62
CviJI	RGCY	3 cut(s)	47, 61, 128
CviKI_1	RGCY	3 cut(s)	47, 61, 128
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	48, 62
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	63
FaiI	YATR	2 cut(s)	11, 107
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	3 cut(s)	29, 44, 63
HpaII	CCGG	3 cut(s)	29, 44, 63
HphI	GGTGA	3 cut(s)	35, 121, 127
Hpy188I	TCNGA	2 cut(s)	79, 156
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	133, 154
LpnPI	CCDG	7 cut(s)	6, 42, 57, 76, 101, 117, 144
LweI	GCATC	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	86
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	96, 162
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	75, 105, 162, 165
MseI	TTAA	1 cut(s)	196
MspI	CCGG	3 cut(s)	29, 44, 63
MspR9I	CCNGG	4 cut(s)	29, 63, 64, 132
MvaI	CCWGG	1 cut(s)	132
NciI	CCSGG	3 cut(s)	29, 63, 64
NdeII	GATC	1 cut(s)	84
NlaIV	GGNNCC	2 cut(s)	86, 129
NmuCI	GTSAC	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	86, 129
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	4 cut(s)	29, 63, 64, 132
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	108
SmaI	CCCGGG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	96, 162
SsiI	CCGC	2 cut(s)	121, 147
StyD4I	CCNGG	4 cut(s)	27, 61, 62, 130
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	96, 162
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspMI	CCCGGG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	162
XmaI	CCCGGG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.