Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Reverse (-)

19415258 .. 19415947

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAACCATCCACCGATTCTCGCTCCGTCTCGGCCCGATATGTCTAGTTACCGCCCCGATATTTCTTAAATCCCGAATCATCTCTTTGGATCCCGGACTTCCATACCCGAATCCAGTCTTCAACTCTCACTTCACGATCGGGAAAAATTTCAGCTCAACCTCTTCTCCCGTCGCCAAAGCGGGTTGGCTTCTGGGTCTCGGAGGAGAGAAGAAGAAAAGCATCAGCATGCCCGATATAGTGAAAGCGGGTGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCCCGGGGATATTGGGTCGGAGAGGATCCAGAAGATAATTGATGATATGGTGAGGGTGATGCGGAAGGCTCCTGGGGTCGGTCTTGCTGCTCCTCAGATTGGAATTCCCTTGAGGACCTTTAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

139

Amino Acids

14.95

Weight (kDa)

9.77

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	79 - 136	1.3e-15	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	54, 182, 248, 349
AclWI	GGATC	4 cut(s)	86, 99, 307, 320
AcsI	RAATTY	2 cut(s)	148, 390
AfiI	CCNNNNNNNGG	2 cut(s)	365, 386
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	35, 203
AlwI	GGATC	4 cut(s)	86, 99, 307, 320
Ama87I	CYCGRG	2 cut(s)	276, 290
AoxI	GGCC	2 cut(s)	34, 273
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	148, 390
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	35, 274, 402
AsuC2I	CCSGG	4 cut(s)	96, 257, 291, 292
AsuHPI	GGTGA	3 cut(s)	263, 349, 355
AvaI	CYCGRG	2 cut(s)	276, 290
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	2 cut(s)	91, 312
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	4 cut(s)	96, 257, 291, 292
BcoDI	GTCTC	2 cut(s)	35, 203
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	5 cut(s)	96, 257, 291, 292, 360
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	2 cut(s)	276, 290
BmgT120I	GGNCC	3 cut(s)	35, 274, 402
BmiI	GGNNCC	3 cut(s)	93, 314, 357
BmrFI	CCNGG	5 cut(s)	96, 257, 291, 292, 360
BmsI	GCATC	2 cut(s)	231, 336
BpiI	GAAGAC	1 cut(s)	112
BpuMI	CCSGG	4 cut(s)	96, 257, 291, 292
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	290, 291, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 386
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	290, 291, 359
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	365, 386
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	219, 369
BseXI	GCAGC	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	36, 275
BsiEI	CGRYCG	1 cut(s)	141
BsiHKCI	CYCGRG	2 cut(s)	276, 290
BsiSI	CCGG	4 cut(s)	96, 257, 272, 291
BslI	CCNNNNNNNGG	2 cut(s)	365, 386
BsmAI	GTCTC	2 cut(s)	35, 203
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	36, 275
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	2 cut(s)	276, 290
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	91, 138, 312
BspACI	CCGC	4 cut(s)	54, 182, 248, 349
BspANI	GGCC	2 cut(s)	36, 275
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	93, 314, 357
BspPI	GGATC	4 cut(s)	86, 99, 307, 320
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	290, 291, 359
BssMI	GATC	3 cut(s)	91, 138, 312
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	94, 141, 315
BstMAI	GTCTC	2 cut(s)	35, 203
BstMBI	GATC	3 cut(s)	91, 138, 312
BstMCI	CGRYCG	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	5 cut(s)	94, 255, 289, 290, 358
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	91, 312
BstYI	RGATCY	2 cut(s)	91, 312
BsuRI	GGCC	2 cut(s)	36, 275
BtsCI	GGATG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	35, 274, 402
Cfr9I	CCCGGG	1 cut(s)	290
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	36, 156, 190, 275, 289, 356
CviKI_1	RGCY	6 cut(s)	36, 156, 190, 275, 289, 356
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	3 cut(s)	93, 140, 314
DpnII	GATC	3 cut(s)	91, 138, 312
DraI	TTTAAA	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	402
Eco88I	CYCGRG	2 cut(s)	276, 290
Eco91I	GGTNACC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	232
FaiI	YATR	5 cut(s)	43, 106, 230, 239, 335
FatI	CATG	1 cut(s)	228
FauI	CCCGC	2 cut(s)	175, 241
Fnu4HI	GCNGC	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	36, 275
HapII	CCGG	4 cut(s)	96, 257, 272, 291
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	3 cut(s)	18, 78, 112
HpaII	CCGG	4 cut(s)	96, 257, 272, 291
HphI	GGTGA	3 cut(s)	263, 349, 355
Hpy188I	TCNGA	3 cut(s)	203, 307, 384
Hpy188III	TCNNGA	4 cut(s)	75, 136, 142, 316
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	265
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	91, 138, 312
LmnI	GCTCC	3 cut(s)	30, 361, 382
LpnPI	CCDG	9 cut(s)	109, 129, 179, 270, 285, 304, 329, 345, 372
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	2 cut(s)	231, 336
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	49, 251
MalI	GATC	3 cut(s)	93, 140, 314
MboI	GATC	3 cut(s)	91, 138, 312
MboII	GAAGA	5 cut(s)	112, 156, 223, 226, 331
MflI	RGATCY	2 cut(s)	91, 312
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	4 cut(s)	148, 324, 390, 410
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	6 cut(s)	172, 197, 303, 333, 390, 393
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	69, 408
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	4 cut(s)	96, 257, 272, 291
MspR9I	CCNGG	5 cut(s)	96, 257, 291, 292, 360
MvaI	CCWGG	1 cut(s)	360
NciI	CCSGG	4 cut(s)	96, 257, 291, 292
NdeII	GATC	3 cut(s)	91, 138, 312
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	3 cut(s)	93, 314, 357
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	18, 78, 112
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	376
Ple19I	CGATCG	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	93, 314, 357
PspPI	GGNCC	3 cut(s)	35, 274, 402
PspPPI	RGGWCCY	1 cut(s)	402
PsuI	RGATCY	2 cut(s)	91, 312
PvuI	CGATCG	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	69, 408
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	91, 138, 312
Sau96I	GGNCC	3 cut(s)	35, 274, 402
ScrFI	CCNGG	5 cut(s)	96, 257, 291, 292, 360
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	3 cut(s)	158, 164, 407
SfaNI	GCATC	2 cut(s)	231, 336
SinI	GGWCC	1 cut(s)	402
SmaI	CCCGGG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	4 cut(s)	148, 324, 390, 410
SsiI	CCGC	4 cut(s)	54, 182, 248, 349
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	5 cut(s)	94, 255, 289, 290, 358
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	4 cut(s)	148, 324, 390, 410
TfiI	GAWTC	3 cut(s)	18, 78, 112
Tru1I	TTAA	2 cut(s)	69, 408
Tru9I	TTAA	2 cut(s)	69, 408
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	148, 390
XceI	RCATGY	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.