Rh2DG404400

Removes the formyl group from the N-terminal Met of newly synthesized proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011241
Physical Location & Seq
Forward (+)
58875111 .. 58878215
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG404400.1

Sequence Viewer

Length: 576 bp
ATGGAAACCATCCACCGATCCACACTTCGTCTCCTTCCCATATCTCTCTCTGCACTATGCCTTACACGACCAACCGCCCCGGAATCCAAAAGAATCCGACTACCCATTTCTATCCCCGGCATTCTAAACCCGAAACCGGCCTTCTTAACGAGCCGCAAAAGTTACAGCTCAGCTCCTTCTCCAGTTGCCAAAGCTGGTTGGTTTCTGGGCCTCGGAGAGAAGAAGAACAAGAGCCTCAGCCTGCCCGATATAGTCAAAGCTGGAGACCCGGTTTTGCACGAGCCGGCCCGAGATGTTGAGCTCGGGGATATTGGGTCGGAGAGGATTCAGAACATAATTGATGATATGGTGAAGGTGATGAGGAAGGCTCCTGGGGTTGGTCTTGCTGCTCCACAGATTGGAGTTCCCTTAAGGATAATAGTCTTGGAAGATACAAAGGAATATATTAGTTATGCACCCAAGGATGAGATTAAAGTTCAACAGAGACGGCCTTTCGATCTTTTGGTGATTATTAACCCAGAGCTTCAAAAGAAGAGCAACAGGACTGCCGTATTCTTTGAAGGCTGCTTAAGGTGA

Protein Analysis

191

Amino Acids

21.11

Weight (kDa)

9.73

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pep_deformylase PF01327 83 - 190 8.2e-25 Polypeptide deformylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15390
fragaria_vesca FvH4_6g30190
malus_domestica MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis pycom17g21000
rosa_chinensis RchiOBHm_Chr2g0136431
rosa_laevigata RLG00000019530
rosa_multiflora Rmu_sc0001998.1_g000005
rosa_roxburghii Rroxscaffold_2G00108300
rosa_rugosa Rorug02G0330100
rosa_samantha Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 2 cut(s) 75, 154
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 136, 377, 398
AflII CTTAAG 2 cut(s) 409, 568
AgsI TTSAA 3 cut(s) 479, 527, 560
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 6 cut(s) 168, 173, 194, 260, 301, 523
AluI AGCT 6 cut(s) 168, 173, 194, 260, 301, 523
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 3 cut(s) 35, 258, 478
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 288, 302
AoxI GGCC 4 cut(s) 138, 208, 285, 488
ApeKI GCWGC 2 cut(s) 386, 564
AspS9I GGNCC 2 cut(s) 208, 286
AsuC2I CCSGG 3 cut(s) 80, 117, 269
AsuHPI GGTGA 3 cut(s) 361, 367, 517
AvaI CYCGRG 2 cut(s) 288, 302
BanII GRGCYC 1 cut(s) 303
BauI CACGAG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 373, 551
BccI CCATC 1 cut(s) 17
BceAI ACGGC 2 cut(s) 503, 533
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 3 cut(s) 80, 117, 269
BcoDI GTCTC 3 cut(s) 35, 258, 478
BfrI CTTAAG 2 cut(s) 409, 568
BisI GCNGC 3 cut(s) 154, 387, 565
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 3 cut(s) 155, 388, 566
Bme1390I CCNGG 4 cut(s) 80, 117, 269, 372
BmeT110I CYCGRG 2 cut(s) 288, 302
BmgT120I GGNCC 2 cut(s) 208, 286
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 4 cut(s) 80, 117, 269, 372
BplI GAGNNNNNCTC 2 cut(s) 352, 384
BpmI CTGGAG 2 cut(s) 165, 282
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 80, 117, 269
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 5 cut(s) 78, 115, 211, 371, 459
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 255, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 377, 398
Bse118I RCCGGY 2 cut(s) 136, 283
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 78, 115, 211, 371, 459
BseGI GGATG 2 cut(s) 9, 469
BseLI CCNNNNNNNGG 3 cut(s) 136, 377, 398
BseMII CTCAG 2 cut(s) 183, 250
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 373, 551
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 4 cut(s) 140, 210, 287, 490
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 2 cut(s) 288, 302
BsiSI CCGG 5 cut(s) 80, 117, 137, 269, 284
BslI CCNNNNNNNGG 3 cut(s) 136, 377, 398
BsmAI GTCTC 3 cut(s) 35, 258, 478
BsmBI CGTCTC 2 cut(s) 35, 478
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 4 cut(s) 140, 210, 287, 490
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 2 cut(s) 288, 302
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 17, 496
Bsp1720I GCTNAGC 1 cut(s) 169
BspACI CCGC 2 cut(s) 75, 154
BspANI GGCC 4 cut(s) 140, 210, 287, 490
BspCNI CTCAG 2 cut(s) 182, 249
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 527
BspTI CTTAAG 2 cut(s) 409, 568
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 136, 283
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 2 cut(s) 136, 283
BssECI CCNNGG 5 cut(s) 78, 115, 211, 371, 459
BssMI GATC 2 cut(s) 17, 496
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 527
BstAFI CTTAAG 2 cut(s) 409, 568
BstC8I GCNNGC 2 cut(s) 242, 285
BstDEI CTNAG 2 cut(s) 169, 236
BstF5I GGATG 2 cut(s) 9, 469
BstKTI GATC 2 cut(s) 20, 499
BstMAI GTCTC 3 cut(s) 35, 258, 478
BstMBI GATC 2 cut(s) 17, 496
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 4 cut(s) 78, 115, 267, 370
BstV1I GCAGC 2 cut(s) 373, 551
BsuRI GGCC 4 cut(s) 140, 210, 287, 490
BtsCI GGATG 2 cut(s) 9, 469
Cac8I GCNNGC 2 cut(s) 242, 285
Cfr10I RCCGGY 2 cut(s) 136, 283
Cfr13I GGNCC 2 cut(s) 208, 286
DdeI CTNAG 2 cut(s) 169, 236
DpnI GATC 2 cut(s) 19, 498
DpnII GATC 2 cut(s) 17, 496
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 301
Eco88I CYCGRG 2 cut(s) 288, 302
EcoICRI GAGCTC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 2 cut(s) 35, 478
FaiI YATR 7 cut(s) 41, 58, 251, 335, 347, 444, 453
Fnu4HI GCNGC 3 cut(s) 154, 387, 565
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 154, 387, 565
GluI GCNGC 3 cut(s) 154, 387, 565
GsuI CTGGAG 2 cut(s) 165, 282
HaeIII GGCC 4 cut(s) 140, 210, 287, 490
HapII CCGG 5 cut(s) 80, 117, 137, 269, 284
HinfI GANTC 3 cut(s) 83, 93, 325
HpaII CCGG 5 cut(s) 80, 117, 137, 269, 284
HphI GGTGA 3 cut(s) 361, 367, 517
Hpy188I TCNGA 4 cut(s) 98, 215, 319, 330
HpyAV CCTTC 6 cut(s) 44, 151, 186, 346, 358, 554
HpyCH4V TGCA 3 cut(s) 53, 277, 455
HpyF3I CTNAG 2 cut(s) 169, 236
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 17, 496
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 3 cut(s) 178, 373, 394
Lsp1109I GCAGC 2 cut(s) 373, 551
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 19, 498
MboI GATC 2 cut(s) 17, 496
MboII GAAGA 4 cut(s) 232, 235, 440, 544
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 121, 297
MnlI CCTC 4 cut(s) 221, 245, 315, 354
MroNI GCCGGC 1 cut(s) 283
MseI TTAA 5 cut(s) 146, 410, 471, 513, 569
MspCI CTTAAG 2 cut(s) 409, 568
MspI CCGG 5 cut(s) 80, 117, 137, 269, 284
MspR9I CCNGG 4 cut(s) 80, 117, 269, 372
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 372
NaeI GCCGGC 1 cut(s) 285
NciI CCSGG 3 cut(s) 80, 117, 269
NdeII GATC 2 cut(s) 17, 496
NgoMIV GCCGGC 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 527
PctI GAATGC 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 285
PfeI GAWTC 3 cut(s) 83, 93, 325
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 3 cut(s) 155, 388, 566
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 208, 286
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 5 cut(s) 146, 410, 471, 513, 569
SatI GCNGC 3 cut(s) 154, 387, 565
Sau3AI GATC 2 cut(s) 17, 496
Sau96I GGNCC 2 cut(s) 208, 286
ScrFI CCNGG 4 cut(s) 80, 117, 269, 372
SduI GDGCHC 1 cut(s) 303
SetI ASST 8 cut(s) 170, 175, 196, 262, 303, 357, 525, 575
SmlI CTYRAG 2 cut(s) 409, 568
SmoI CTYRAG 2 cut(s) 409, 568
Sse9I AATT 1 cut(s) 336
SsiI CCGC 2 cut(s) 75, 154
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 4 cut(s) 78, 115, 267, 370
StyI CCWWGG 1 cut(s) 459
TaqI TCGA 1 cut(s) 495
TasI AATT 1 cut(s) 336
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 83, 93, 325
Tru1I TTAA 5 cut(s) 146, 410, 471, 513, 569
Tru9I TTAA 5 cut(s) 146, 410, 471, 513, 569
TseI GCWGC 2 cut(s) 386, 564
Van91I CCANNNNNTGG 1 cut(s) 398
Vha464I CTTAAG 2 cut(s) 409, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.