Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011241

Physical Location & Seq

Genomic Coordinates Forward (+)

13238170 .. 13238598

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1165900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAAACCATCCATCGATTCTCGCTTCGTCTCGGCCCGATTTGTCTAGCTACCGCCCCGATATTTCTGAACTCCCGAATCATCTCTTTGAATCCCGGACTTCCAAACCCGGATCCAGTCTTCAACACCCATTTCACGATCCGGAAAAAGTTCAGCTCAACCTCTTCTCCCGTCGCCAAAGCCGGTTGGCTTCTGGGTCTCGGAGGAGAGAAGAAGAAGAAGAGCATCAGCATGCCCGATATAGTGAAAGCAGGTGACCCGGTTTTGCACGAACCGGCCCGAGATGTTGAGCCCGGGGATATTGGGTCGGAGAGGATCCAGAAGATAATTGATGATATGGTGAGGGTGATGCGGAAGGCTCCTGGGGTCGGTCTTGCCGCTCCTCAGATTGGAATTCCCTTGAGGGTCAGTTTTGGTATTTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0030312 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

143

Amino Acids

15.33

Weight (kDa)

10.0

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	80 - 136	2.1e-15	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15390
fragaria_vesca	FvH4_6g30190
malus_domestica	MD13G1165900.v1.1 MD13G1166000.v1.1 MD17G1207300.v1.1 MD17G1207400.v1.1
prunus_persica	Prupe.3G081800_v2.0.a1 Prupe.3G081800_v2.0.a1
pyrus_communis	pycom17g21000
rosa_chinensis	RchiOBHm_Chr2g0136431
rosa_laevigata	RLG00000019530
rosa_multiflora	Rmu_sc0001998.1_g000005
rosa_roxburghii	Rroxscaffold_2G00108300
rosa_rugosa	Rorug02G0330100
rosa_samantha	Rh2AG381300 Rh2BG388000 Rh2CG367500 Rh2DG404400
rosa_wichuraiana	Rw2G031170 Rw7G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	3 cut(s)	54, 352, 378
AclWI	GGATC	5 cut(s)	107, 120, 133, 310, 323
AcsI	RAATTY	1 cut(s)	393
AfiI	CCNNNNNNNGG	2 cut(s)	368, 389
AgsI	TTSAA	2 cut(s)	91, 124
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	2 cut(s)	50, 156
AluI	AGCT	2 cut(s)	50, 156
Alw26I	GTCTC	2 cut(s)	35, 203
AlwI	GGATC	5 cut(s)	107, 120, 133, 310, 323
Ama87I	CYCGRG	2 cut(s)	279, 293
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	2 cut(s)	34, 276
ApoI	RAATTY	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	35, 277
AsuC2I	CCSGG	5 cut(s)	96, 110, 260, 294, 295
AsuHPI	GGTGA	3 cut(s)	266, 352, 358
AvaI	CYCGRG	2 cut(s)	279, 293
BamHI	GGATCC	2 cut(s)	112, 315
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	112
BccI	CCATC	2 cut(s)	17, 21
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	5 cut(s)	96, 110, 260, 294, 295
BcoDI	GTCTC	2 cut(s)	35, 203
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	6 cut(s)	96, 110, 260, 294, 295, 363
BmeT110I	CYCGRG	2 cut(s)	279, 293
BmgT120I	GGNCC	2 cut(s)	35, 277
BmiI	GGNNCC	3 cut(s)	114, 317, 360
BmrFI	CCNGG	6 cut(s)	96, 110, 260, 294, 295, 363
BmsI	GCATC	2 cut(s)	234, 339
BpiI	GAAGAC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	5 cut(s)	96, 110, 260, 294, 295
Bsa29I	ATCGAT	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	293, 294, 362
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 389
Bse118I	RCCGGY	2 cut(s)	182, 274
Bse1I	ACTGG	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	363
BseCI	ATCGAT	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	293, 294, 362
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	368, 389
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	219, 372
BshFI	GGCC	2 cut(s)	36, 278
BshVI	ATCGAT	1 cut(s)	16
BsiHKCI	CYCGRG	2 cut(s)	279, 293
BsiSI	CCGG	7 cut(s)	96, 110, 142, 183, 260, 275, 294
BslI	CCNNNNNNNGG	2 cut(s)	368, 389
BsmAI	GTCTC	2 cut(s)	35, 203
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	36, 278
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	2 cut(s)	279, 293
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	112, 138, 315
BspACI	CCGC	3 cut(s)	54, 352, 378
BspANI	GGCC	2 cut(s)	36, 278
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	16
BspEI	TCCGGA	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	114, 317, 360
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	5 cut(s)	107, 120, 133, 310, 323
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	182, 274
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	2 cut(s)	182, 274
BssECI	CCNNGG	3 cut(s)	293, 294, 362
BssMI	GATC	3 cut(s)	112, 138, 315
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	2 cut(s)	169, 215
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	3 cut(s)	115, 141, 318
BstMAI	GTCTC	2 cut(s)	35, 203
BstMBI	GATC	3 cut(s)	112, 138, 315
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	235
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	6 cut(s)	94, 108, 258, 292, 293, 361
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	112, 315
BstYI	RGATCY	2 cut(s)	112, 315
Bsu15I	ATCGAT	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	36, 278
BsuTUI	ATCGAT	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	233
Cfr10I	RCCGGY	2 cut(s)	182, 274
Cfr13I	GGNCC	2 cut(s)	35, 277
Cfr9I	CCCGGG	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	16
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	8 cut(s)	36, 50, 156, 182, 190, 278, 292, 359
CviKI_1	RGCY	8 cut(s)	36, 50, 156, 182, 190, 278, 292, 359
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	114, 140, 317
DpnII	GATC	3 cut(s)	112, 138, 315
Eam1104I	CTCTTC	2 cut(s)	169, 215
EarI	CTCTTC	2 cut(s)	169, 215
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	203
Eco88I	CYCGRG	2 cut(s)	279, 293
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	233, 242, 338
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	36, 278
HapII	CCGG	7 cut(s)	96, 110, 142, 183, 260, 275, 294
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	3 cut(s)	18, 78, 91
HpaII	CCGG	7 cut(s)	96, 110, 142, 183, 260, 275, 294
HphI	GGTGA	3 cut(s)	266, 352, 358
Hpy188I	TCNGA	4 cut(s)	69, 203, 310, 387
Hpy188III	TCNNGA	4 cut(s)	75, 136, 142, 319
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	268
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	112, 138, 315
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	2 cut(s)	364, 385
LweI	GCATC	2 cut(s)	234, 339
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	3 cut(s)	114, 140, 317
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	3 cut(s)	112, 138, 315
MboII	GAAGA	7 cut(s)	112, 156, 223, 226, 229, 232, 334
MflI	RGATCY	2 cut(s)	112, 315
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	327, 393
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	172, 197, 306, 336, 393, 396
MroI	TCCGGA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	427
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	7 cut(s)	96, 110, 142, 183, 260, 275, 294
MspR9I	CCNGG	6 cut(s)	96, 110, 260, 294, 295, 363
MvaI	CCWGG	1 cut(s)	363
NciI	CCSGG	5 cut(s)	96, 110, 260, 294, 295
NdeII	GATC	3 cut(s)	112, 138, 315
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	3 cut(s)	114, 317, 360
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	18, 78, 91
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	114, 317, 360
PspPI	GGNCC	2 cut(s)	35, 277
PsuI	RGATCY	2 cut(s)	112, 315
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	112, 138, 315
Sau96I	GGNCC	2 cut(s)	35, 277
ScrFI	CCNGG	6 cut(s)	96, 110, 260, 294, 295, 363
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	4 cut(s)	52, 158, 164, 256
SfaNI	GCATC	2 cut(s)	234, 339
SmaI	CCCGGG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	2 cut(s)	327, 393
SsiI	CCGC	3 cut(s)	54, 352, 378
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	6 cut(s)	94, 108, 258, 292, 293, 361
TaqI	TCGA	1 cut(s)	16
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	327, 393
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	18, 78, 91
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspMI	CCCGGG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	235
XmaI	CCCGGG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.