Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Forward (+)

5404130 .. 5405910

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCTACTCCATTTCTCTCCGGCGAAACCCCTCATTTCTCCACCCAATCTCCGCCGCAATTCACCCACATTCCTCATTTCCCCGCCGCGATCTCTTCGAATTCGAGCAATCGACGCCGCCCAAATCTTCGATTACGAAACCCAACTCAAATCCGAGTACCGCAAATCCTCTGCTCTCAAAATCGCCGTCTTGGGTTTCGGCAATTTCGGCCAATTCCTCTCCAAAACCCTAATTCGACACGGCCACGATCTAATCACTCACTCCCGCTCCGATTACTCCGACGCCGCAAACTCAATCGGAGCTCGTTTCTTCGATAACCCTCACGATCTCTGTGAACAACATCCCGACGTTGTCCTCCTCTGTACCTCAATCCTCTCCACAGAATCAGTCCTCAGATCATTCCCTTTCCAACGTCTCCGTCGTAGCACACTCTTCGTCGATGTTCTCTCCGTTAAGGAATTCCCAAAAGCCCTCTTCATTAAATACCTTCCTAAGGAGTTTGACATTCTCTGTACTCATCCAATGTTTGGACCTGAGAGTGGTAAGCATTCTTGGTCTGGCTTGCCCTTTGTCTACGATAAGGTGAGAATCGGAGACGCAGCTTCAAGACAAGAGAGGTGTGAGAAGTTTCTAAGAATTTTTGAGAATGAAGGTTGCAAGATGGTTGAAATGAGCTGTGAGAAGCATGATTATTACGCAGCTGGATCGCAATTCGTGACGCATACTATGGGAAGGGTTTTGGAGAAATATGGAGTTGAGTCTTCGCCGATTAACACCAAAGGTTATGAGACGTTGTTGGATTTGGTGGAGAACACATCGAGTGATAGCTTTGAGCTTTTCTACGGTTTGTTTATGTATAATCCGAATGCTCTTGAACAGTTGGAGAGATTGGATATGGCTTTTGAGTCTGTTAAGAAGGAGCTGTTTGGGAGATTACATCAGCAATACAGGAAGCAAATGTTTGGTGGGGAGGTTCAATCGCCCAAGAAAACTGAGCAGAAATTGCTCAATGATGGTGGTGTTGTTCCTATGAATGATATATCATCATCATCATCATCATCATCATCATCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

358

Amino Acids

40.63

Weight (kDa)

7.66

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	60 - 149	6e-08	NADP oxidoreductase coenzyme F420-dependent
PDH_N	PF02153	79 - 222	7.6e-09	Prephenate dehydrogenase, nucleotide-binding domain
TYRAAT1_C	PF26213	246 - 319	7.6e-35	TYRAAT1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	88
AciI	CCGC	8 cut(s)	52, 55, 83, 86, 117, 160, 265, 285
AclWI	GGATC	1 cut(s)	712
AcoI	YGGCCR	2 cut(s)	208, 241
AcsI	RAATTY	3 cut(s)	99, 458, 636
AcyI	GRCGYC	2 cut(s)	114, 282
AfaI	GTAC	3 cut(s)	158, 364, 514
AfiI	CCNNNNNNNGG	3 cut(s)	493, 527, 539
AgsI	TTSAA	4 cut(s)	606, 668, 875, 977
AluBI	AGCT	7 cut(s)	302, 602, 675, 701, 828, 835, 922
AluI	AGCT	7 cut(s)	302, 602, 675, 701, 828, 835, 922
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	419, 588, 782
AlwI	GGATC	1 cut(s)	712
AoxI	GGCC	2 cut(s)	208, 241
ApeKI	GCWGC	2 cut(s)	599, 698
ApoI	RAATTY	3 cut(s)	99, 458, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	54, 595
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	611, 710
BccI	CCATC	2 cut(s)	655, 1007
BceAI	ACGGC	2 cut(s)	170, 256
BcgI	CGANNNNNNTGC	4 cut(s)	415, 449, 687, 721
BcoDI	GTCTC	3 cut(s)	419, 588, 782
BisI	GCNGC	6 cut(s)	55, 86, 117, 285, 600, 699
BlsI	GCNGC	6 cut(s)	56, 87, 118, 286, 601, 700
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	753
Bpu14I	TTCGAA	1 cut(s)	97
BsaHI	GRCGYC	2 cut(s)	114, 282
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 251, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 527, 539
Bse21I	CCTNAGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	340, 517
BseLI	CCNNNNNNNGG	3 cut(s)	493, 527, 539
BseMII	CTCAG	3 cut(s)	406, 525, 984
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	611, 710
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	210, 243
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	493, 527, 539
BsmAI	GTCTC	3 cut(s)	419, 588, 782
BsmBI	CGTCTC	3 cut(s)	419, 588, 782
BsmI	GAATGC	2 cut(s)	547, 871
BsnI	GGCC	2 cut(s)	210, 243
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	89, 247, 325, 395, 704
BspACI	CCGC	8 cut(s)	52, 55, 83, 86, 117, 160, 265, 285
BspANI	GGCC	2 cut(s)	210, 243
BspCNI	CTCAG	3 cut(s)	405, 526, 985
BspFNI	CGCG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	712
BspT104I	TTCGAA	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	267
BssMI	GATC	5 cut(s)	89, 247, 325, 395, 704
BssNI	GRCGYC	2 cut(s)	114, 282
Bst4CI	ACNGT	2 cut(s)	845, 879
Bst6I	CTCTTC	3 cut(s)	99, 437, 479
BstACI	GRCGYC	2 cut(s)	114, 282
BstAPI	GCANNNNNTGC	1 cut(s)	1003
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	5 cut(s)	392, 492, 534, 632, 993
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	340, 517
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	92, 250, 328, 398, 707
BstMAI	GTCTC	3 cut(s)	419, 588, 782
BstMBI	GATC	5 cut(s)	89, 247, 325, 395, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 207, 1003
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	611, 710
BstV2I	GAAGAC	1 cut(s)	753
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	210, 243
BtsCI	GGATG	2 cut(s)	340, 517
Cac8I	GCNNGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	530
CseI	GACGC	4 cut(s)	122, 290, 605, 727
Csp6I	GTAC	3 cut(s)	157, 363, 513
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	3 cut(s)	157, 363, 513
DdeI	CTNAG	5 cut(s)	392, 492, 534, 632, 993
DpnI	GATC	5 cut(s)	91, 249, 327, 397, 706
DpnII	GATC	5 cut(s)	89, 247, 325, 395, 704
EaeI	YGGCCR	2 cut(s)	208, 241
Eam1104I	CTCTTC	3 cut(s)	99, 437, 479
EarI	CTCTTC	3 cut(s)	99, 437, 479
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRI	GAATTC	2 cut(s)	99, 458
EcoT38I	GRGCYC	1 cut(s)	304
Esp3I	CGTCTC	3 cut(s)	419, 588, 782
FaeI	CATG	1 cut(s)	689
FatI	CATG	1 cut(s)	685
FauI	CCCGC	2 cut(s)	90, 272
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	55, 86, 117, 285, 600, 699
FokI	GGATG	2 cut(s)	327, 504
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	6 cut(s)	55, 86, 117, 285, 600, 699
GluI	GCNGC	6 cut(s)	55, 86, 117, 285, 600, 699
HaeIII	GGCC	2 cut(s)	210, 243
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	4 cut(s)	122, 290, 605, 727
Hin1I	GRCGYC	2 cut(s)	114, 282
Hin1II	CATG	1 cut(s)	689
HinfI	GANTC	4 cut(s)	383, 588, 758, 905
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	54, 595
Hpy166II	GTNNAC	2 cut(s)	335, 574
Hpy188I	TCNGA	7 cut(s)	154, 271, 280, 299, 395, 593, 864
Hpy188III	TCNNGA	5 cut(s)	323, 344, 606, 715, 872
Hpy8I	GTNNAC	2 cut(s)	335, 574
Hpy99I	CGWCG	5 cut(s)	116, 284, 350, 423, 440
HpyAV	CCTTC	4 cut(s)	497, 644, 726, 910
HpyCH4III	ACNGT	2 cut(s)	845, 879
HpyCH4IV	ACGT	3 cut(s)	348, 412, 791
HpyCH4V	TGCA	1 cut(s)	657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 207, 1003
HpyF3I	CTNAG	5 cut(s)	392, 492, 534, 632, 993
HpySE526I	ACGT	3 cut(s)	348, 412, 791
Hsp92I	GRCGYC	2 cut(s)	114, 282
Hsp92II	CATG	1 cut(s)	689
Kzo9I	GATC	5 cut(s)	89, 247, 325, 395, 704
LmnI	GCTCC	3 cut(s)	272, 299, 919
LpnPI	CCDG	5 cut(s)	33, 543, 546, 687, 934
Lsp1109I	GCAGC	2 cut(s)	611, 710
MaeII	ACGT	3 cut(s)	348, 412, 791
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	5 cut(s)	91, 249, 327, 397, 706
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	5 cut(s)	89, 247, 325, 395, 704
MboII	GAAGA	6 cut(s)	86, 118, 301, 424, 466, 753
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	9 cut(s)	58, 99, 202, 212, 231, 458, 636, 710, 1001
MlyI	GAGTC	2 cut(s)	767, 914
MmeI	TCCRAC	4 cut(s)	303, 433, 777, 861
MseI	TTAA	5 cut(s)	453, 480, 771, 912, 1075
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	20
Mva1269I	GAATGC	2 cut(s)	547, 871
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	113, 207, 1003
NdeII	GATC	5 cut(s)	89, 247, 325, 395, 704
NlaIII	CATG	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	715
NspV	TTCGAA	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PctI	GAATGC	2 cut(s)	547, 871
PfeI	GAWTC	2 cut(s)	383, 588
PflFI	GACNNNGTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	6 cut(s)	56, 87, 118, 286, 601, 700
PleI	GAGTC	2 cut(s)	766, 913
PpsI	GAGTC	2 cut(s)	766, 913
Psp124BI	GAGCTC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	530
PsyI	GACNNNGTC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	158, 364, 514
RsaNI	GTAC	3 cut(s)	157, 363, 513
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	5 cut(s)	453, 480, 771, 912, 1075
SatI	GCNGC	6 cut(s)	55, 86, 117, 285, 600, 699
Sau3AI	GATC	5 cut(s)	89, 247, 325, 395, 704
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	2 cut(s)	767, 914
SduI	GDGCHC	1 cut(s)	304
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	9 cut(s)	58, 99, 202, 212, 231, 458, 636, 710, 1001
SsiI	CCGC	8 cut(s)	52, 55, 83, 86, 117, 160, 265, 285
SstI	GAGCTC	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	845, 879
TaiI	ACGT	3 cut(s)	351, 415, 794
TaqI	TCGA	8 cut(s)	97, 103, 111, 129, 235, 312, 438, 818
TasI	AATT	9 cut(s)	58, 99, 202, 212, 231, 458, 636, 710, 1001
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	4 cut(s)	57, 88, 119, 287
TfiI	GAWTC	2 cut(s)	383, 588
Tru1I	TTAA	5 cut(s)	453, 480, 771, 912, 1075
Tru9I	TTAA	5 cut(s)	453, 480, 771, 912, 1075
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	2 cut(s)	599, 698
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	3 cut(s)	466, 663, 1046
TspGWI	ACGGA	2 cut(s)	407, 439
Tth111I	GACNNNGTC	1 cut(s)	350
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	491
XapI	RAATTY	3 cut(s)	99, 458, 636
XmiI	GTMKAC	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.