Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Reverse (-)

150947 .. 154073

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgctctcattctcttctcctcaaacccaactttcactcctccctccaaatctctacccatcttctcactcattctctctctctcttcttccacctctaaaacccaacaaaaaccagaaccatcttcatcttcaacgcctaacaatccaagctatcgatgctgcactgtcctttgactacgagtcccaactcaaaacccataacctagaatccaacactctcaaaattggcatcattggcttcggcaactacggccagtttttggccaggtgcttcgtccaacaaggtcacactgtcctcgcccaatctcgctccgactactctaaagtcgcgcaagactctggcgtttcgttcttcactgaccccaatgacctctgtgagcaacacccagaagtggttctgttatgcacttcgattatgtccaccgaaaaggtcatcaaaaccttcccatttcaaagacttcgtcgaaataccttatttgttgatgttctttcagttaaggaattcccaagagacttgttactgacttacttgcctgctgagtttgaccttctttgcacacacccaatgtttggtccacagagtggtaagaactcgtgggctggttttccttttgtgtatgacaaggttagaattggggatagtggttttaggctcaataggtgtgagaagtttttggacattttcgctagggaagggtgtcgaatggtggaaatgtcgtgtgctgagcacgataggcatgccgcagggtcacaatttgtgacacatacaattgggagaatgttggagaaattcggattggagtcttcgccgattaatactaaggggtatgagactttattgaacttggtggagaatacggctcaggatagctttgagttgtactatggtttgtttatatataacaagaatgcaatggagcagttggagaggctggaaatcgcattcgaggatcttaagaaagagttacgaaatcggtcagaaccgcagaagttgctttcgattggtagccaaatcggaagcaatgaggatcctcagaatgatactcaaaaggtgaatgatagtcttgacacagcactagacttggaggacattgaagacgagattgaggagaaaagtgataaggttttgactgctatagccggtaagactgctgcacaacttccagaagctgtcaggaaggagaagttgaagcaacctgctagtgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

403

Amino Acids

45.5

Weight (kDa)

5.48

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1207
AccB7I	CCANNNNNTGG	3 cut(s)	262, 572, 584
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	744, 986
AclWI	GGATC	3 cut(s)	960, 1025, 1038
AcoI	YGGCCR	2 cut(s)	253, 264
AcsI	RAATTY	2 cut(s)	503, 791
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	4 cut(s)	262, 394, 572, 584
AflII	CTTAAG	1 cut(s)	956
AgsI	TTSAA	5 cut(s)	134, 455, 844, 1097, 1192
AhdI	GACNNNNNGTC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	3 cut(s)	152, 873, 1172
AluI	AGCT	3 cut(s)	152, 873, 1172
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	2 cut(s)	507, 827
AlwI	GGATC	3 cut(s)	960, 1025, 1038
AlwNI	CAGNNNCTG	1 cut(s)	1172
AoxI	GGCC	2 cut(s)	253, 264
ApeKI	GCWGC	2 cut(s)	161, 1154
ApoI	RAATTY	2 cut(s)	503, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	1066
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	1030
BauI	CACGAG	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	798, 1104
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	148, 1141
BccI	CCATC	2 cut(s)	67, 129
BceAI	ACGGC	2 cut(s)	268, 876
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	507, 827
BfaI	CTAG	4 cut(s)	206, 690, 1079, 1203
BfmI	CTRYAG	1 cut(s)	1137
BfrI	CTTAAG	1 cut(s)	956
BfuAI	ACCTGC	1 cut(s)	1207
BisI	GCNGC	3 cut(s)	162, 744, 1155
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	3 cut(s)	163, 745, 1156
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	575
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	1032
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	148, 240
BpiI	GAAGAC	2 cut(s)	798, 1104
Bpu10I	CCTNAGC	1 cut(s)	864
Bpu1102I	GCTNAGC	1 cut(s)	726
Bsa29I	ATCGAT	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 394, 572, 584
Bse118I	RCCGGY	1 cut(s)	1142
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	2 cut(s)	921, 1030
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	262, 394, 572, 584
BseMI	GCAATG	2 cut(s)	921, 1030
BseMII	CTCAG	4 cut(s)	531, 717, 878, 1049
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	3 cut(s)	9, 29, 1124
BseXI	GCAGC	2 cut(s)	148, 1141
BsgI	GTGCAG	2 cut(s)	147, 1140
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	255, 266
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	1143
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	262, 394, 572, 584
BsmAI	GTCTC	2 cut(s)	507, 827
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	2 cut(s)	916, 944
BsnI	GGCC	2 cut(s)	255, 266
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	952, 1030
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	2 cut(s)	744, 986
BspANI	GGCC	2 cut(s)	255, 266
BspCNI	CTCAG	4 cut(s)	532, 718, 877, 1048
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	1032
BspMI	ACCTGC	1 cut(s)	1207
BspPI	GGATC	3 cut(s)	960, 1025, 1038
BspTI	CTTAAG	1 cut(s)	956
BsrDI	GCAATG	2 cut(s)	921, 1030
BsrFI	RCCGGY	1 cut(s)	1142
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	1142
BssMI	GATC	2 cut(s)	952, 1030
BssSI	CACGAG	1 cut(s)	595
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	168, 295
Bst6I	CTCTTC	2 cut(s)	19, 90
BstAFI	CTTAAG	1 cut(s)	956
BstAPI	GCANNNNNTGC	1 cut(s)	994
BstC8I	GCNNGC	2 cut(s)	537, 741
BstDEI	CTNAG	5 cut(s)	540, 726, 822, 864, 1035
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	955, 1033
BstMAI	GTCTC	2 cut(s)	507, 827
BstMBI	GATC	2 cut(s)	952, 1030
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 237, 252, 736, 994
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	1137
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	148, 1141
BstV2I	GAAGAC	2 cut(s)	798, 1104
BstX2I	RGATCY	2 cut(s)	952, 1030
BstYI	RGATCY	2 cut(s)	952, 1030
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	255, 266
BsuTUI	ATCGAT	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	164, 291, 357
BveI	ACCTGC	1 cut(s)	1207
Cac8I	GCNNGC	2 cut(s)	537, 741
CaiI	CAGNNNCTG	1 cut(s)	1172
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	1142
Cfr13I	GGNCC	1 cut(s)	575
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	883
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	5 cut(s)	540, 726, 822, 864, 1035
DpnI	GATC	2 cut(s)	954, 1032
DpnII	GATC	2 cut(s)	952, 1030
DraIII	CACNNNGTG	1 cut(s)	584
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	253, 264
Eam1104I	CTCTTC	2 cut(s)	19, 90
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EarI	CTCTTC	2 cut(s)	19, 90
Eco47I	GGWCC	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	266
FaeI	CATG	1 cut(s)	743
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	162, 744, 1155
Fsp4HI	GCNGC	3 cut(s)	162, 744, 1155
FspBI	CTAG	4 cut(s)	206, 690, 1079, 1203
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	3 cut(s)	162, 744, 1155
HaeIII	GGCC	2 cut(s)	255, 266
HapII	CCGG	1 cut(s)	1143
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	4 cut(s)	182, 209, 338, 803
HpaII	CCGG	1 cut(s)	1143
HphI	GGTGA	1 cut(s)	1066
Hpy166II	GTNNAC	2 cut(s)	423, 578
Hpy188I	TCNGA	5 cut(s)	316, 797, 982, 1019, 1038
Hpy188III	TCNNGA	4 cut(s)	866, 1067, 1166, 1177
Hpy8I	GTNNAC	2 cut(s)	423, 578
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	4 cut(s)	454, 560, 689, 1174
HpyCH4III	ACNGT	2 cut(s)	168, 295
HpyCH4V	TGCA	5 cut(s)	164, 408, 558, 914, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 237, 252, 736, 994
HpyF3I	CTNAG	5 cut(s)	540, 726, 822, 864, 1035
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	952, 1030
LmnI	GCTCC	2 cut(s)	317, 919
Lsp1109I	GCAGC	2 cut(s)	148, 1141
LweI	GCATC	2 cut(s)	148, 240
MaeI	CTAG	4 cut(s)	206, 690, 1079, 1203
MaeIII	GTNAC	5 cut(s)	287, 519, 750, 760, 966
MalI	GATC	2 cut(s)	954, 1032
MboI	GATC	2 cut(s)	952, 1030
MboII	GAAGA	9 cut(s)	6, 54, 77, 80, 116, 122, 346, 798, 1109
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	2 cut(s)	952, 1030
MhlI	GDGCHC	1 cut(s)	732
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	6 cut(s)	225, 503, 633, 755, 771, 791
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	191, 332, 812
MmeI	TCCRAC	5 cut(s)	237, 304, 339, 765, 906
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	3 cut(s)	498, 816, 957
Msp20I	TGGCCA	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	956
MspI	CCGG	1 cut(s)	1143
MspR9I	CCNGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	916, 944
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	5 cut(s)	158, 237, 252, 736, 994
NdeII	GATC	2 cut(s)	952, 1030
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	1 cut(s)	1032
NmuCI	GTSAC	3 cut(s)	287, 750, 760
NspI	RCATGY	1 cut(s)	743
PaeI	GCATGC	1 cut(s)	743
PctI	GAATGC	2 cut(s)	916, 944
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	209
PflFI	GACNNNGTC	1 cut(s)	462
PflMI	CCANNNNNTGG	3 cut(s)	262, 572, 584
PkrI	GCNGC	3 cut(s)	163, 745, 1156
PleI	GAGTC	3 cut(s)	190, 332, 811
PpsI	GAGTC	3 cut(s)	190, 332, 811
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	1032
PspPI	GGNCC	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	2 cut(s)	952, 1030
PsyI	GACNNNGTC	1 cut(s)	462
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
SaqAI	TTAA	3 cut(s)	498, 816, 957
SatI	GCNGC	3 cut(s)	162, 744, 1155
Sau3AI	GATC	2 cut(s)	952, 1030
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	3 cut(s)	191, 332, 812
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	2 cut(s)	148, 240
SfcI	CTRYAG	1 cut(s)	1137
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	743
Sse9I	AATT	6 cut(s)	225, 503, 633, 755, 771, 791
SsiI	CCGC	2 cut(s)	744, 986
SspMI	CTAG	4 cut(s)	206, 690, 1079, 1203
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	168, 295
TaqI	TCGA	6 cut(s)	156, 413, 466, 703, 948, 1001
TaqII	GACCGA	1 cut(s)	966
TasI	AATT	6 cut(s)	225, 503, 633, 755, 771, 791
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	498, 816, 957
Tru9I	TTAA	3 cut(s)	498, 816, 957
TscAI	CASTG	3 cut(s)	171, 298, 364
TseFI	GTSAC	3 cut(s)	287, 750, 760
TseI	GCWGC	2 cut(s)	161, 1154
Tsp45I	GTSAC	3 cut(s)	287, 750, 760
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	3 cut(s)	171, 298, 364
Tth111I	GACNNNGTC	1 cut(s)	462
Van91I	CCANNNNNTGG	3 cut(s)	262, 572, 584
Vha464I	CTTAAG	1 cut(s)	956
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	2 cut(s)	503, 791
XceI	RCATGY	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	4 cut(s)	206, 690, 1079, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.