Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Forward (+)

34319618 .. 34320391

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTACTTCGATTATGCCAGTGAAAAGGTAATCAAAACCTTCCCATTTCAGAGACTTCTTCGAAATACCTTATTTGTTGATGTTCTTTCAGTAAAGGAGTTCCCAAGAAATTTGTTCCTCAATTACTTGCCTGCTGAGTTTGACATTCTTTGCACACACCCAATGTTTGGTCCACAGAGTGGTAAGGACTCGTGGGTTGGTCTTCCTTTTGTGTATGACAAGGTTAGGATTGGGGATTATGGTTTTAGGCTCAATAGGTGTGAGAAGTTTTTGGACATTTTCGCAAGGGAAGGGTGTAGAATGGTGGAAATGTCGTGTGCCGAGCACGATAGGGATGCTGCAGGATCACAATTTGTGACACACACAATGGGGAGAGTGTTGGACAAATTCAGATTGGAGTCCTCGCCGATTAATACTAAAGGGTATGAGACTTTGTTGAACTTGGTGGAGAATACGGCTGGGGATAGCTTTGACTTGTACTATGGGTTATTTATGTATAACAAGAATGCAATGGAGCAGCTGGAGAGGCTGGACATGGCATTCGAGGATCTTAAGAAAGAGTTGTTTGGGAATTTGCATGAGGTTTGTAGGAGACAGTTGTTTGGGAGTGCTGAACGGGTCGAAGCCTTAAGAGAAGAAGAGGATGCAGAACCGCAGAAGTTGCTTTCGACTGGTGGTCAAATCGGAAGCAATGAGGATCCTCGGAATGGTGCTAAAAAAGATTACGAAAACGGTCAGGCTTCTCTGAATTCAGCTCTTGTGTCTCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

257

Amino Acids

29.55

Weight (kDa)

5.2

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TYRAAT1_C	PF26213	126 - 199	7.7e-36	TYRAAT1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	167, 179
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	4 cut(s)	352, 555, 692, 705
AcsI	RAATTY	4 cut(s)	109, 386, 571, 748
AdeI	CACNNNGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	5, 479
AfiI	CCNNNNNNNGG	3 cut(s)	167, 179, 707
AflII	CTTAAG	2 cut(s)	551, 628
AgsI	TTSAA	1 cut(s)	439
AhdI	GACNNNNNGTC	1 cut(s)	675
AluBI	AGCT	3 cut(s)	468, 520, 755
AluI	AGCT	3 cut(s)	468, 520, 755
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	4 cut(s)	46, 422, 586, 768
AlwI	GGATC	4 cut(s)	352, 555, 692, 705
ApeKI	GCWGC	2 cut(s)	338, 517
ApoI	RAATTY	4 cut(s)	109, 386, 571, 748
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	697
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	325, 529
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BcoDI	GTCTC	4 cut(s)	46, 422, 586, 768
BfmI	CTRYAG	1 cut(s)	339
BfrI	CTTAAG	2 cut(s)	551, 628
BisI	GCNGC	2 cut(s)	339, 518
BlsI	GCNGC	2 cut(s)	340, 519
Bme18I	GGWCC	1 cut(s)	170
BmeRI	GACNNNNNGTC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	699
BmsI	GCATC	2 cut(s)	325, 634
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 179, 707
Bse1I	ACTGG	2 cut(s)	18, 676
Bse3DI	GCAATG	2 cut(s)	516, 697
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	2 cut(s)	340, 649
BseLI	CCNNNNNNNGG	3 cut(s)	167, 179, 707
BseMI	GCAATG	2 cut(s)	516, 697
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	18, 676
BseXI	GCAGC	2 cut(s)	325, 529
BseYI	CCCAGC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	327
BslI	CCNNNNNNNGG	3 cut(s)	167, 179, 707
BsmAI	GTCTC	4 cut(s)	46, 422, 586, 768
BsmI	GAATGC	2 cut(s)	511, 539
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	344, 547, 697
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	699
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	4 cut(s)	352, 555, 692, 705
BspT104I	TTCGAA	1 cut(s)	61
BspTI	CTTAAG	2 cut(s)	551, 628
BsrDI	GCAATG	2 cut(s)	516, 697
BsrI	ACTGG	2 cut(s)	18, 676
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	3 cut(s)	344, 547, 697
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	597, 734
Bst6I	CTCTTC	1 cut(s)	633
BstAFI	CTTAAG	2 cut(s)	551, 628
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	135, 767
BstF5I	GGATG	2 cut(s)	340, 649
BstKTI	GATC	3 cut(s)	347, 550, 700
BstMAI	GTCTC	4 cut(s)	46, 422, 586, 768
BstMBI	GATC	3 cut(s)	344, 547, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	526, 661
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	325, 529
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	547, 697
BstYI	RGATCY	2 cut(s)	547, 697
BtsCI	GGATG	2 cut(s)	340, 649
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	4, 478
CviAII	CATG	2 cut(s)	535, 578
CviJI	RGCY	8 cut(s)	250, 458, 468, 520, 529, 626, 740, 755
CviKI_1	RGCY	8 cut(s)	250, 458, 468, 520, 529, 626, 740, 755
CviQI	GTAC	2 cut(s)	4, 478
DdeI	CTNAG	2 cut(s)	135, 767
DpnI	GATC	3 cut(s)	346, 549, 699
DpnII	GATC	3 cut(s)	344, 547, 697
DraIII	CACNNNGTG	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	633
Eam1105I	GACNNNNNGTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	748
FaeI	CATG	2 cut(s)	538, 581
FaiI	YATR	9 cut(s)	15, 216, 240, 426, 483, 494, 498, 536, 579
FatI	CATG	2 cut(s)	534, 577
Fnu4HI	GCNGC	2 cut(s)	339, 518
FokI	GGATG	2 cut(s)	347, 656
Fsp4HI	GCNGC	2 cut(s)	339, 518
GluI	GCNGC	2 cut(s)	339, 518
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	542
Hin1II	CATG	2 cut(s)	538, 581
HinfI	GANTC	2 cut(s)	188, 398
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	5 cut(s)	51, 392, 686, 705, 747
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	49, 284
HpyCH4III	ACNGT	2 cut(s)	597, 734
HpyCH4V	TGCA	5 cut(s)	153, 341, 509, 577, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	526, 661
HpyF3I	CTNAG	2 cut(s)	135, 767
Hsp92II	CATG	2 cut(s)	538, 581
Kzo9I	GATC	3 cut(s)	344, 547, 697
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	8 cut(s)	31, 144, 327, 444, 506, 515, 657, 722
Lsp1109I	GCAGC	2 cut(s)	325, 529
LweI	GCATC	2 cut(s)	325, 634
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	346, 549, 699
MboI	GATC	3 cut(s)	344, 547, 697
MboII	GAAGA	4 cut(s)	50, 194, 647, 650
MflI	RGATCY	2 cut(s)	547, 697
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	6 cut(s)	109, 121, 350, 386, 571, 748
MlyI	GAGTC	2 cut(s)	182, 407
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	8 cut(s)	128, 412, 519, 538, 574, 634, 688, 711
MseI	TTAA	3 cut(s)	411, 552, 629
MspA1I	CMGCKG	1 cut(s)	520
MspCI	CTTAAG	2 cut(s)	551, 628
Mva1269I	GAATGC	2 cut(s)	511, 539
MwoI	GCNNNNNNNGC	2 cut(s)	526, 661
NdeII	GATC	3 cut(s)	344, 547, 697
NlaIII	CATG	2 cut(s)	538, 581
NlaIV	GGNNCC	1 cut(s)	699
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	61
PctI	GAATGC	2 cut(s)	511, 539
PflMI	CCANNNNNTGG	2 cut(s)	167, 179
PkrI	GCNGC	2 cut(s)	340, 519
PleI	GAGTC	2 cut(s)	182, 406
PpsI	GAGTC	2 cut(s)	182, 406
PshBI	ATTAAT	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	547, 697
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	5, 479
RsaNI	GTAC	2 cut(s)	4, 478
SaqAI	TTAA	3 cut(s)	411, 552, 629
SatI	GCNGC	2 cut(s)	339, 518
Sau3AI	GATC	3 cut(s)	344, 547, 697
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	2 cut(s)	182, 407
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	30, 41, 71, 225, 260, 470, 522, 585, 757
SfaNI	GCATC	2 cut(s)	325, 634
SfcI	CTRYAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	61
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	551, 628
SmoI	CTYRAG	2 cut(s)	551, 628
Sse9I	AATT	6 cut(s)	109, 121, 350, 386, 571, 748
SsiI	CCGC	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	597, 734
TaqI	TCGA	5 cut(s)	9, 61, 543, 621, 668
TasI	AATT	6 cut(s)	109, 121, 350, 386, 571, 748
TatI	WGTACW	2 cut(s)	3, 477
Tru1I	TTAA	3 cut(s)	411, 552, 629
Tru9I	TTAA	3 cut(s)	411, 552, 629
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	338, 517
Tsp45I	GTSAC	1 cut(s)	355
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	2 cut(s)	167, 179
Vha464I	CTTAAG	2 cut(s)	551, 628
VpaK11BI	GGWCC	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	4 cut(s)	109, 386, 571, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.