Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Forward (+)

6887921 .. 6890398

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G092000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTCTCATTCTCTTCCACACAAACCAAACCTTCTCCTCTCACTCCAAATCTCTACCCATCCTCTCACTCAATCTCTCACTCTCTTATGACACCTTCTTCCACTCGCAAACCCCAAAAAAACCAGACCCATCTTAATCTCCAACGCCTCAGAGTTCGAGCCATCGACGCAGCTCAGCCTTTTGACTACGAGACCCGAATCAAAACCCATTACCAAAAATCCAACACTCTCAAAATCGCCATTATTGGGTTCGGCAATTTCGGCCAGTTCTTGGCCAAAACTTTCGTCCAACAAGGCCACACAGTCCTCGCCCAATCTCGCTCTGACTACTCCAAAGTTGCAGAAAACGTCGGCGTTTCATTCTTCACAGACCCACATGACCTCTGTGAGCAACACCCAGAAGTTGTTCTTCTCTGCACTTCAATTTTGTCCACTGAAAAGGTAATCAAGTCGTTCCCTTTTCAGAGGCTGAGAAGAAATACCCTGTTTGTTGATGTTCTTTCAGTCAAAGAATTTCCAAGAGATTTGTTGTTGAAGTATTTGCCTGATGAGTTTGATATTCTTTGCACACACCCAATGTTTGGACCACAGAGTGGTAAAAACTCATGGGTTAATCTTCCTTTTGTGTATGACAAGGTTAGAATTGGAAATAATGGGTTTAGGTTCAATAGGTGTGAGAAATTTTTAGACATTTTTGGTAGGGAAGGTTGCAGGATGGTTGAAATGTCATGTGCAGAACATGACAAGCATGCAGCAGGGTCACAATTTGTGACCCATACAATGGGGAGGGTGTTGGAGAAGTTTAAATTGGAGTCTTCACCAATTAATACAAAAGGGTATGAGACTTTGTTGAATTTGGTGGAGAATACATCTGGGGACAGCTTTGATTTGTATTATGGGTTGTTTATGTATAACAAGAATGCAATGGAGCAGTTGGAGAGGTTGGATATGGCATTTGAGGCTCTTAAGAAAGAGTTGTTTGGGCATTTGCATGAGGTTTGTAGGAAGCAATTGTTTGGGACTGCAGAAGCAGTTGAAATTCCAAGAGAAGAAGAGCCTGCCAAGTCACATAAATTGCTTCCAGTTGGTGCTCAAAATGGAAGCAATGTTGTTACTCAAAATCGAAGCGGTGAGGCTCCTCAGAGCGGTGCTCATGAAGGTTACGAAGATAGTGCTCCTCTTGATTCTGCTTCTGTGTCTCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

403

Amino Acids

45.45

Weight (kDa)

7.68

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	271, 581, 593, 781
AccBSI	CCGCTC	1 cut(s)	1146
AciI	CCGC	2 cut(s)	1128, 1146
AcoI	YGGCCR	2 cut(s)	262, 273
AcsI	RAATTY	4 cut(s)	512, 680, 853, 1038
AdeI	CACNNNGTG	1 cut(s)	593
AfiI	CCNNNNNNNGG	6 cut(s)	246, 271, 581, 593, 781, 1145
AflII	CTTAAG	1 cut(s)	965
AgsI	TTSAA	6 cut(s)	423, 535, 667, 722, 853, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	2 cut(s)	173, 882
AluI	AGCT	2 cut(s)	173, 882
Alw21I	GWGCWC	3 cut(s)	1093, 1153, 1177
Alw26I	GTCTC	3 cut(s)	185, 836, 1203
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	3 cut(s)	262, 273, 295
ApeKI	GCWGC	2 cut(s)	170, 752
ApoI	RAATTY	4 cut(s)	512, 680, 853, 1038
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AseI	ATTAAT	1 cut(s)	825
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	2 cut(s)	810, 1142
AvaII	GGWCC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	3 cut(s)	1093, 1153, 1177
BbvI	GCAGC	2 cut(s)	182, 764
BccI	CCATC	4 cut(s)	67, 138, 170, 709
BcgI	CGANNNNNNTGC	2 cut(s)	1154, 1188
BcoDI	GTCTC	3 cut(s)	185, 836, 1203
BfmI	CTRYAG	1 cut(s)	1023
BfrI	CTTAAG	1 cut(s)	965
BisI	GCNGC	2 cut(s)	171, 753
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	2 cut(s)	172, 754
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	1137
BpiI	GAAGAC	1 cut(s)	807
BplI	GAGNNNNNCTC	2 cut(s)	1135, 1167
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	6 cut(s)	246, 271, 581, 593, 781, 1145
Bse1I	ACTGG	2 cut(s)	265, 1082
Bse3DI	GCAATG	2 cut(s)	930, 1111
BseGI	GGATG	2 cut(s)	59, 720
BseLI	CCNNNNNNNGG	6 cut(s)	246, 271, 581, 593, 781, 1145
BseMI	GCAATG	2 cut(s)	930, 1111
BseMII	CTCAG	4 cut(s)	163, 188, 461, 1154
BseNI	ACTGG	2 cut(s)	265, 1082
BseRI	GAGGAG	3 cut(s)	27, 1128, 1167
BseXI	GCAGC	2 cut(s)	182, 764
BsgI	GTGCAG	2 cut(s)	400, 753
BshFI	GGCC	3 cut(s)	264, 275, 297
BsiHKAI	GWGCWC	3 cut(s)	1093, 1153, 1177
BslFI	GGGAC	2 cut(s)	890, 1033
BslI	CCNNNNNNNGG	6 cut(s)	246, 271, 581, 593, 781, 1145
BsmAI	GTCTC	3 cut(s)	185, 836, 1203
BsmFI	GGGAC	2 cut(s)	890, 1033
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	3 cut(s)	264, 275, 297
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	1093, 1153, 1177
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	1128, 1146
BspANI	GGCC	3 cut(s)	264, 275, 297
BspCNI	CTCAG	4 cut(s)	162, 187, 462, 1153
BspHI	TCATGA	1 cut(s)	1153
BspLI	GGNNCC	1 cut(s)	1137
BspMAI	CTGCAG	1 cut(s)	1027
BspQI	GCTCTTC	1 cut(s)	1047
BspTI	CTTAAG	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	1146
BsrDI	GCAATG	2 cut(s)	930, 1111
BsrI	ACTGG	2 cut(s)	265, 1082
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	19, 1047
BstAFI	CTTAAG	1 cut(s)	965
BstC8I	GCNNGC	2 cut(s)	750, 1059
BstDEI	CTNAG	5 cut(s)	149, 174, 470, 1140, 1202
BstF5I	GGATG	2 cut(s)	59, 720
BstMAI	GTCTC	3 cut(s)	185, 836, 1203
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 261, 959
BstNSI	RCATGY	1 cut(s)	752
BstSFI	CTRYAG	1 cut(s)	1023
BstV1I	GCAGC	2 cut(s)	182, 764
BstV2I	GAAGAC	1 cut(s)	807
BsuRI	GGCC	3 cut(s)	264, 275, 297
BtsCI	GGATG	2 cut(s)	59, 720
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	750, 1059
CaiI	CAGNNNCTG	1 cut(s)	469
CciI	TCATGA	1 cut(s)	1153
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	176
CviAII	CATG	7 cut(s)	377, 606, 729, 740, 749, 992, 1154
DdeI	CTNAG	5 cut(s)	149, 174, 470, 1140, 1202
DraI	TTTAAA	1 cut(s)	805
DraIII	CACNNNGTG	1 cut(s)	593
EaeI	YGGCCR	2 cut(s)	262, 273
Eam1104I	CTCTTC	2 cut(s)	19, 1047
EarI	CTCTTC	2 cut(s)	19, 1047
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	584
FaeI	CATG	7 cut(s)	380, 609, 732, 743, 752, 995, 1157
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	2 cut(s)	890, 1033
FatI	CATG	7 cut(s)	376, 605, 728, 739, 748, 991, 1153
Fnu4HI	GCNGC	2 cut(s)	171, 753
FokI	GGATG	2 cut(s)	46, 727
Fsp4HI	GCNGC	2 cut(s)	171, 753
GluI	GCNGC	2 cut(s)	171, 753
HaeIII	GGCC	3 cut(s)	264, 275, 297
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	7 cut(s)	380, 609, 732, 743, 752, 995, 1157
HinfI	GANTC	3 cut(s)	198, 812, 1184
HphI	GGTGA	2 cut(s)	810, 1142
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	4 cut(s)	152, 325, 465, 1143
Hpy188III	TCNNGA	2 cut(s)	1154, 1181
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	2 cut(s)	170, 353
HpyAV	CCTTC	4 cut(s)	42, 105, 698, 1151
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	9 cut(s)	341, 417, 567, 711, 734, 752, 923, 991, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 261, 959
HpyF3I	CTNAG	5 cut(s)	149, 174, 470, 1140, 1202
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	7 cut(s)	380, 609, 732, 743, 752, 995, 1157
LguI	GCTCTTC	1 cut(s)	1047
LmnI	GCTCC	3 cut(s)	928, 1141, 1180
Lsp1109I	GCAGC	2 cut(s)	182, 764
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	5 cut(s)	759, 769, 1065, 1111, 1160
MbiI	CCGCTC	1 cut(s)	1146
MfeI	CAATTG	1 cut(s)	1010
MhlI	GDGCHC	3 cut(s)	1093, 1153, 1177
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	6 cut(s)	166, 246, 313, 774, 915, 924
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	5 cut(s)	135, 612, 804, 825, 966
MslI	CAYNNNNRTG	1 cut(s)	990
Msp20I	TGGCCA	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	965
MunI	CAATTG	1 cut(s)	1010
Mva1269I	GAATGC	1 cut(s)	925
MwoI	GCNNNNNNNGC	3 cut(s)	167, 261, 959
NlaIII	CATG	7 cut(s)	380, 609, 732, 743, 752, 995, 1157
NlaIV	GGNNCC	1 cut(s)	1137
NmuCI	GTSAC	3 cut(s)	759, 769, 1065
NspI	RCATGY	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	1153
PciSI	GCTCTTC	1 cut(s)	1047
PctI	GAATGC	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	198, 1184
PflMI	CCANNNNNTGG	4 cut(s)	271, 581, 593, 781
PkrI	GCNGC	2 cut(s)	172, 754
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PshBI	ATTAAT	1 cut(s)	825
PspN4I	GGNNCC	1 cut(s)	1137
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	990
SapI	GCTCTTC	1 cut(s)	1047
SaqAI	TTAA	5 cut(s)	135, 612, 804, 825, 966
SatI	GCNGC	2 cut(s)	171, 753
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	821
SduI	GDGCHC	3 cut(s)	1093, 1153, 1177
SfcI	CTRYAG	1 cut(s)	1023
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
SphI	GCATGC	1 cut(s)	752
SsiI	CCGC	2 cut(s)	1128, 1146
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	157, 165, 1123
TfiI	GAWTC	2 cut(s)	198, 1184
Tru1I	TTAA	5 cut(s)	135, 612, 804, 825, 966
Tru9I	TTAA	5 cut(s)	135, 612, 804, 825, 966
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	3 cut(s)	759, 769, 1065
TseI	GCWGC	2 cut(s)	170, 752
Tsp45I	GTSAC	3 cut(s)	759, 769, 1065
TspDTI	ATGAA	2 cut(s)	348, 1170
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	4 cut(s)	271, 581, 593, 781
Vha464I	CTTAAG	1 cut(s)	965
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	4 cut(s)	512, 680, 853, 1038
XceI	RCATGY	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.