Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Reverse (-)

44430050 .. 44431496

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018999

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGGCTCAAGATTGCAATTGTTGGTTTTGGGAACTTTGGTCAGTTTCTTGCTAAAACTATTATACGTCAAGGTCAGATAGTTCTAGCCTATTCTCGGTCAGATTACTATGATGTGGCCCAAAAGTTGGGGGTAATTTACTTCTCTGATGTCGAGGAACTTTGCAAAGAGCATCCAGAAGTGATACTTTTTTGTACCTCTATTCTTTCAACTGAGAAAGTTCTCAGGTCATTTCCAGTTCAGAGGTTGATGAGGAATACTTTGTTTGTTGATGTTCTTTCAGTTAAAGAATTTCCAAAAAACTTGTTTCTTCAAAAATTGCCATTGAATTTTGATATTCTCTGTACGCATCCTATGTTTGGACCAGAGAGTGGTAAAAATGGGTGGGAGGCTCTTCCTTTTGTTTATGATAAGGTTAGGGTGGGAAGTGACGAATCAAGGGTATCACTCTGTGACCGATTTCTTGATATCTTTGCTCTTGAAGGGTGTCGAATGGTTGAAATGTCTTGTGCAGAGCATGATAGGCATGCAGCAGGGTCACAATTCCTTACGCACACAGTAGGAAGGGTTTTGGAAAAGCTGGGTTTGGAGTCGACACCTATCGTTACAAATGGTTACAAGACTTTATTGAATTTGGTGGAGACTACAGTAGGAGATAGTTTTGATCTTTACTATGGCTTGTTCATGTATAATGTAAATGCAATGGACCAGCTAAATAGATTGGGCATGGCTTTTGACTCATTAGAGGAGCAGTTTTTGGGCCGTTTGCATGGTTTTTCTGAGAATGCAAGCAAAACCTTGTTGCCAAATCATCCAAGAGTGCAGCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

F420_oxidored PDH

Protein Analysis

278

Amino Acids

31.48

Weight (kDa)

6.07

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	4 - 93	1.8e-08	NADP oxidoreductase coenzyme F420-dependent
PDH_N	PF02153	18 - 126	4.1e-08	Prephenate dehydrogenase, nucleotide-binding domain
TYRAAT1_C	PF26213	190 - 259	2.8e-30	TYRAAT1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	127, 371
AccI	GTMKAC	1 cut(s)	593
AcsI	RAATTY	3 cut(s)	290, 328, 631
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	196, 346
AfiI	CCNNNNNNNGG	4 cut(s)	96, 127, 359, 371
AgsI	TTSAA	6 cut(s)	210, 314, 328, 482, 500, 631
AluBI	AGCT	3 cut(s)	580, 712, 826
AluI	AGCT	3 cut(s)	580, 712, 826
Alw26I	GTCTC	1 cut(s)	635
AoxI	GGCC	2 cut(s)	117, 760
ApeKI	GCWGC	2 cut(s)	530, 823
ApoI	RAATTY	3 cut(s)	290, 328, 631
AspS9I	GGNCC	4 cut(s)	118, 362, 706, 760
AvaII	GGWCC	2 cut(s)	362, 706
BbvI	GCAGC	1 cut(s)	542
BceAI	ACGGC	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	531, 824
BlsI	GCNGC	2 cut(s)	532, 825
Bme18I	GGWCC	2 cut(s)	362, 706
BmgT120I	GGNCC	4 cut(s)	118, 362, 706, 760
BmsI	GCATC	2 cut(s)	181, 358
BplI	GAGNNNNNCTC	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 127, 359, 371
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	708
BseGI	GGATG	3 cut(s)	172, 349, 811
BseLI	CCNNNNNNNGG	4 cut(s)	96, 127, 359, 371
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	3 cut(s)	204, 238, 771
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	1 cut(s)	542
BseYI	CCCAGC	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	119, 762
BslI	CCNNNNNNNGG	4 cut(s)	96, 127, 359, 371
BsmAI	GTCTC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	2 cut(s)	119, 762
Bsp143I	GATC	1 cut(s)	664
BspANI	GGCC	2 cut(s)	119, 762
BspCNI	CTCAG	3 cut(s)	205, 237, 772
BspQI	GCTCTTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	236
BssMI	GATC	1 cut(s)	664
Bst4CI	ACNGT	2 cut(s)	559, 649
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	528, 790
BstDEI	CTNAG	3 cut(s)	213, 224, 780
BstF5I	GGATG	3 cut(s)	172, 349, 811
BstKTI	GATC	1 cut(s)	667
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	1 cut(s)	664
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNSI	RCATGY	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	119, 762
BtsCI	GGATG	3 cut(s)	172, 349, 811
Cac8I	GCNNGC	2 cut(s)	528, 790
Cfr13I	GGNCC	4 cut(s)	118, 362, 706, 760
Csp6I	GTAC	2 cut(s)	195, 345
CviAII	CATG	5 cut(s)	518, 527, 685, 727, 770
CviQI	GTAC	2 cut(s)	195, 345
DdeI	CTNAG	3 cut(s)	213, 224, 780
DpnI	GATC	1 cut(s)	666
DpnII	GATC	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	2 cut(s)	362, 706
EcoRV	GATATC	1 cut(s)	469
FaeI	CATG	5 cut(s)	521, 530, 688, 730, 773
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	5 cut(s)	517, 526, 684, 726, 769
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	2 cut(s)	531, 824
FokI	GGATG	3 cut(s)	159, 336, 798
Fsp4HI	GCNGC	2 cut(s)	531, 824
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	531, 824
GsaI	CCCAGC	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	119, 762
Hin1II	CATG	5 cut(s)	521, 530, 688, 730, 773
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	3 cut(s)	434, 590, 737
Hpy166II	GTNNAC	1 cut(s)	594
Hpy188I	TCNGA	5 cut(s)	78, 103, 148, 243, 781
Hpy188III	TCNNGA	4 cut(s)	10, 176, 464, 479
Hpy8I	GTNNAC	1 cut(s)	594
HpyAV	CCTTC	2 cut(s)	476, 558
HpyCH4III	ACNGT	2 cut(s)	559, 649
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	8 cut(s)	17, 165, 512, 530, 701, 769, 788, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	3 cut(s)	213, 224, 780
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	521, 530, 688, 730, 773
Kzo9I	GATC	1 cut(s)	664
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	748, 831
LpnPI	CCDG	7 cut(s)	189, 211, 249, 378, 519, 566, 722
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	2 cut(s)	181, 358
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	5 cut(s)	428, 452, 537, 604, 614
MalI	GATC	1 cut(s)	666
MboI	GATC	1 cut(s)	664
MboII	GAAGA	2 cut(s)	302, 386
MfeI	CAATTG	1 cut(s)	18
MluCI	AATT	7 cut(s)	18, 135, 290, 317, 328, 542, 631
MlyI	GAGTC	2 cut(s)	599, 731
MnlI	CCTC	6 cut(s)	148, 208, 237, 246, 382, 739
MseI	TTAA	1 cut(s)	285
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	790
MwoI	GCNNNNNNNGC	1 cut(s)	523
NdeII	GATC	1 cut(s)	664
NlaIII	CATG	5 cut(s)	521, 530, 688, 730, 773
NmuCI	GTSAC	3 cut(s)	428, 452, 537
NspI	RCATGY	1 cut(s)	530
PaeI	GCATGC	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	790
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	2 cut(s)	127, 371
PkrI	GCNGC	2 cut(s)	532, 825
PleI	GAGTC	2 cut(s)	598, 731
PpsI	GAGTC	2 cut(s)	598, 731
PspFI	CCCAGC	1 cut(s)	580
PspPI	GGNCC	4 cut(s)	118, 362, 706, 760
RsaI	GTAC	2 cut(s)	196, 346
RsaNI	GTAC	2 cut(s)	195, 345
SalI	GTCGAC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	531, 824
Sau3AI	GATC	1 cut(s)	664
Sau96I	GGNCC	4 cut(s)	118, 362, 706, 760
SchI	GAGTC	2 cut(s)	599, 731
SfaNI	GCATC	2 cut(s)	181, 358
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	2 cut(s)	362, 706
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	7 cut(s)	18, 135, 290, 317, 328, 542, 631
SspMI	CTAG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	559, 649
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	153, 490, 593
TaqII	GACCGA	2 cut(s)	87, 471
TasI	AATT	7 cut(s)	18, 135, 290, 317, 328, 542, 631
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	3 cut(s)	428, 452, 537
TseI	GCWGC	2 cut(s)	530, 823
Tsp45I	GTSAC	3 cut(s)	428, 452, 537
TspDTI	ATGAA	1 cut(s)	673
Van91I	CCANNNNNTGG	2 cut(s)	127, 371
VpaK11BI	GGWCC	2 cut(s)	362, 706
XapI	RAATTY	3 cut(s)	290, 328, 631
XceI	RCATGY	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	593
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.