Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Forward (+)

11875149 .. 11877246

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G127100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGATGGAGATGAGCTGTGCTGAGCACCACAATTACGCGGCGGCTTCTCAGTTTATCACTCTCACAGTTGGGAGGGTGTTGGGGGCGTTGAAATTGGAGTCTACGCCGATAAATACAACAGGGTATGAGGCATTGTTGGGTTTGGTGGAGAATACATCTTCTGGGGATAGCTTTGATTTGTATTATGAGTTGTTTATGCACCACGAAAATGCTTTGGAGATATTGGAGAGGTTGGGCTTGGCTTTTGATGCCCTGAAGAATCAGCTTTTTGGGTATTTGCACCAGTTTGTGGGAAACCAATTGTTTGGCAATGGAAATGCAGATAAAGTAGCAGCACCTTTGCAGGAAGATCAAAATGGAACTGCATTGGTATCTTCTTCAACATCAAAAGCTATGGGATGGCAGAATGCTGCTCAGCCACAGGACCACAAGGCGCAGATTTCAGATCGTTTTGTTGACAAATCAAGGCTCAAGATTGCAATTGTTGGTTTTGGAAACTTCGGTCAGTTCCTCGCTAAAACAATGGTGCGTCAAGGCCATTTAGTTCTAGCCTACTCTCGATCGGATTACCCCAATGTGGCTCAAAAATTAGGGGTTTCATACTTCTCCAATGCAGAGGATCTTTTCGAAAATCGTCCAGAAGTAGTACTGATTTGTACTTCCATTCTTTCAACTGAGAAAGTCCTTAGGTCATTGCCATTGCAAAGGTTGAAGAAGAATACTTTGTTTGTTGATGTCCTTTCGGTAAAAGAATTTCCAAGAAATCTGTTACTTCAAAATTTGCCGCTGGATTGTGATATACTCTGTACGCATCCTATGTTTGGACCAGAGAGTGGAAAAAATGGGTGGAATGGTCTTCCTTTTGTTTATGACAAGGTCAGGGTCGGAGGTGACGAATCAAGAGTGTCACGGTGCAACAAATTTCTGGACATATTTGCACGGGAAGGGTGCAAAATGGTTGAAATGTCTTGCGCAGAACATGATATGCATGCAGCAGAGTCACAGTTCATTACACACACTGTGGGCAGGGTTCTGGGAAAGTTGGGTTTGAAATCGACAGCAGTCGACACAAATGGTTACAAGACTTTGTTGAGTTTGGTGGAGACTACGGCAGGAGATAGCTTTGATCTCTACTATGGGTTGTTCCTGTACAATATGAATGCAATGGAACAGCTAAAAATGTTGGACATGGCTTTTGAATCATTAAAGAAGCAACTTTTTAGGCGTTTGCATGGTGTTATTCATAATCAAATTTTTGAGGAAACACCAGATAAGTCTCAAGTTATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01230 map00400 map01100 map01110 map01230

Pfam Domains

Protein Families

F420_oxidored PDH

Protein Analysis

431

Amino Acids

48.08

Weight (kDa)

6.02

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	973
AccB7I	CCANNNNNTGG	2 cut(s)	289, 833
AccI	GTMKAC	2 cut(s)	101, 1065
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	38, 41, 785
AclWI	GGATC	1 cut(s)	627
AcsI	RAATTY	4 cut(s)	752, 778, 920, 1251
AcuI	CTGAAG	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	1021
AfaI	GTAC	4 cut(s)	648, 658, 808, 1151
AfiI	CCNNNNNNNGG	4 cut(s)	289, 577, 821, 833
AgsI	TTSAA	8 cut(s)	91, 381, 672, 712, 776, 962, 1051, 1199
AluBI	AGCT	6 cut(s)	15, 171, 265, 392, 1122, 1174
AluI	AGCT	6 cut(s)	15, 171, 265, 392, 1122, 1174
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	1097, 1281
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	3 cut(s)	332, 410, 992
ApoI	RAATTY	4 cut(s)	752, 778, 920, 1251
ArsI	GACNNNNNNTTYG	2 cut(s)	1178, 1210
AspLEI	GCGC	2 cut(s)	436, 974
AspS9I	GGNCC	2 cut(s)	424, 824
AsuHPI	GGTGA	1 cut(s)	902
AsuII	TTCGAA	1 cut(s)	627
AvaII	GGWCC	2 cut(s)	424, 824
AxyI	CCTNAGG	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	344, 397, 1004
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	1125
BcoDI	GTCTC	2 cut(s)	1097, 1281
BfaI	CTAG	1 cut(s)	548
BisI	GCNGC	6 cut(s)	39, 42, 333, 411, 785, 993
BlpI	GCTNAGC	2 cut(s)	21, 414
BlsI	GCNGC	6 cut(s)	40, 43, 334, 412, 786, 994
BmcAI	AGTACT	1 cut(s)	648
Bme18I	GGWCC	2 cut(s)	424, 824
BmgT120I	GGNCC	2 cut(s)	424, 824
BmsI	GCATC	2 cut(s)	238, 820
BoxI	GACNNNNGTC	1 cut(s)	1061
BpiI	GAAGAC	1 cut(s)	848
Bpu1102I	GCTNAGC	2 cut(s)	21, 414
Bpu14I	TTCGAA	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	455, 1263
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 577, 821, 833
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	686
Bse3DI	GCAATG	4 cut(s)	316, 692, 698, 1170
BseGI	GGATG	2 cut(s)	404, 811
BseLI	CCNNNNNNNGG	4 cut(s)	289, 577, 821, 833
BseMI	GCAATG	4 cut(s)	316, 692, 698, 1170
BseMII	CTCAG	4 cut(s)	12, 62, 428, 666
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	3 cut(s)	344, 397, 1004
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	27
BslI	CCNNNNNNNGG	4 cut(s)	289, 577, 821, 833
BsmAI	GTCTC	2 cut(s)	1097, 1281
BsmI	GAATGC	2 cut(s)	412, 1165
BsnI	GGCC	1 cut(s)	537
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	5 cut(s)	349, 445, 560, 619, 1126
Bsp1720I	GCTNAGC	2 cut(s)	21, 414
BspACI	CCGC	3 cut(s)	38, 41, 785
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	4 cut(s)	13, 61, 427, 667
BspFNI	CGCG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	627
BsrDI	GCAATG	4 cut(s)	316, 692, 698, 1170
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	5 cut(s)	349, 445, 560, 619, 1126
Bst4CI	ACNGT	4 cut(s)	67, 912, 1005, 1021
BstAUI	TGTACA	1 cut(s)	1149
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	990
BstDEI	CTNAG	5 cut(s)	21, 48, 414, 675, 686
BstF5I	GGATG	2 cut(s)	404, 811
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	436, 974
BstKTI	GATC	5 cut(s)	352, 448, 563, 622, 1129
BstMAI	GTCTC	2 cut(s)	1097, 1281
BstMBI	GATC	5 cut(s)	349, 445, 560, 619, 1126
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	992
BstPAI	GACNNNNGTC	1 cut(s)	1061
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	344, 397, 1004
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	404, 811
BtsIMutI	CAGTG	1 cut(s)	1017
Cac8I	GCNNGC	1 cut(s)	990
CfoI	GCGC	2 cut(s)	436, 974
Cfr13I	GGNCC	2 cut(s)	424, 824
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	4 cut(s)	647, 657, 807, 1150
CviAII	CATG	4 cut(s)	980, 989, 1189, 1232
CviQI	GTAC	4 cut(s)	647, 657, 807, 1150
DdeI	CTNAG	5 cut(s)	21, 48, 414, 675, 686
DpnI	GATC	5 cut(s)	351, 447, 562, 621, 1128
DpnII	GATC	5 cut(s)	349, 445, 560, 619, 1126
DraIII	CACNNNGTG	1 cut(s)	1021
Eco47I	GGWCC	2 cut(s)	424, 824
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	686
EcoT22I	ATGCAT	1 cut(s)	990
FaeI	CATG	4 cut(s)	983, 992, 1192, 1235
FatI	CATG	4 cut(s)	979, 988, 1188, 1231
FblI	GTMKAC	2 cut(s)	101, 1065
Fnu4HI	GCNGC	6 cut(s)	39, 42, 333, 411, 785, 993
FokI	GGATG	2 cut(s)	411, 798
Fsp4HI	GCNGC	6 cut(s)	39, 42, 333, 411, 785, 993
FspBI	CTAG	1 cut(s)	548
FspI	TGCGCA	1 cut(s)	973
GlaI	GCGC	2 cut(s)	435, 973
GluI	GCNGC	6 cut(s)	39, 42, 333, 411, 785, 993
HaeIII	GGCC	1 cut(s)	537
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	2 cut(s)	436, 974
Hin1II	CATG	4 cut(s)	983, 992, 1192, 1235
Hin6I	GCGC	2 cut(s)	434, 972
HinP1I	GCGC	2 cut(s)	434, 972
HincII	GTYRAC	2 cut(s)	457, 1066
HindII	GTYRAC	2 cut(s)	457, 1066
HinfI	GANTC	5 cut(s)	98, 259, 896, 998, 1199
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	3 cut(s)	102, 457, 1066
Hpy188I	TCNGA	3 cut(s)	445, 565, 887
Hpy188III	TCNNGA	5 cut(s)	472, 558, 638, 900, 926
Hpy8I	GTNNAC	3 cut(s)	102, 457, 1066
HpyAV	CCTTC	1 cut(s)	938
HpyCH4III	ACNGT	4 cut(s)	67, 912, 1005, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	5 cut(s)	21, 48, 414, 675, 686
Hsp92II	CATG	4 cut(s)	983, 992, 1192, 1235
HspAI	GCGC	2 cut(s)	434, 972
Kzo9I	GATC	5 cut(s)	349, 445, 560, 619, 1126
Lsp1109I	GCAGC	3 cut(s)	344, 397, 1004
LweI	GCATC	2 cut(s)	238, 820
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	5 cut(s)	768, 890, 906, 999, 1076
MalI	GATC	5 cut(s)	351, 447, 562, 621, 1128
MboI	GATC	5 cut(s)	349, 445, 560, 619, 1126
MboII	GAAGA	8 cut(s)	150, 268, 359, 366, 369, 724, 727, 848
MfeI	CAATTG	2 cut(s)	299, 480
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	9 cut(s)	31, 92, 299, 480, 587, 752, 778, 920, 1251
MlyI	GAGTC	2 cut(s)	107, 1007
MmeI	TCCRAC	2 cut(s)	865, 1164
MnlI	CCTC	7 cut(s)	66, 121, 222, 521, 610, 881, 1252
Mph1103I	ATGCAT	1 cut(s)	990
MseI	TTAA	1 cut(s)	1205
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	787
MunI	CAATTG	2 cut(s)	299, 480
Mva1269I	GAATGC	2 cut(s)	412, 1165
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	5 cut(s)	349, 445, 560, 619, 1126
NlaIII	CATG	4 cut(s)	983, 992, 1192, 1235
NmuCI	GTSAC	3 cut(s)	890, 906, 999
NsbI	TGCGCA	1 cut(s)	973
NsiI	ATGCAT	1 cut(s)	990
NspI	RCATGY	1 cut(s)	992
NspV	TTCGAA	1 cut(s)	627
PaeI	GCATGC	1 cut(s)	992
PcsI	WCGNNNNNNNCGW	1 cut(s)	891
PctI	GAATGC	2 cut(s)	412, 1165
PfeI	GAWTC	3 cut(s)	259, 896, 1199
PflFI	GACNNNGTC	1 cut(s)	875
PflMI	CCANNNNNTGG	2 cut(s)	289, 833
PkrI	GCNGC	6 cut(s)	40, 43, 334, 412, 786, 994
Ple19I	CGATCG	1 cut(s)	563
PleI	GAGTC	2 cut(s)	106, 1006
PpsI	GAGTC	2 cut(s)	106, 1006
PshAI	GACNNNNGTC	1 cut(s)	1061
PspPI	GGNCC	2 cut(s)	424, 824
PsuI	RGATCY	1 cut(s)	619
PsyI	GACNNNGTC	1 cut(s)	875
PvuI	CGATCG	1 cut(s)	563
RsaI	GTAC	4 cut(s)	648, 658, 808, 1151
RsaNI	GTAC	4 cut(s)	647, 657, 807, 1150
RseI	CAYNNNNRTG	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	1064
SaqAI	TTAA	1 cut(s)	1205
SatI	GCNGC	6 cut(s)	39, 42, 333, 411, 785, 993
Sau3AI	GATC	5 cut(s)	349, 445, 560, 619, 1126
Sau96I	GGNCC	2 cut(s)	424, 824
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	2 cut(s)	107, 1007
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	238, 820
SfuI	TTCGAA	1 cut(s)	627
SinI	GGWCC	2 cut(s)	424, 824
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	470, 1278
SmoI	CTYRAG	2 cut(s)	470, 1278
SphI	GCATGC	1 cut(s)	992
Sse9I	AATT	9 cut(s)	31, 92, 299, 480, 587, 752, 778, 920, 1251
SsiI	CCGC	3 cut(s)	38, 41, 785
SspMI	CTAG	1 cut(s)	548
TaaI	ACNGT	4 cut(s)	67, 912, 1005, 1021
TaqI	TCGA	4 cut(s)	559, 627, 1055, 1065
TaqII	GACCGA	1 cut(s)	491
TasI	AATT	9 cut(s)	31, 92, 299, 480, 587, 752, 778, 920, 1251
TatI	WGTACW	3 cut(s)	646, 656, 1149
TauI	GCSGC	3 cut(s)	41, 44, 787
TfiI	GAWTC	3 cut(s)	259, 896, 1199
Tru1I	TTAA	1 cut(s)	1205
Tru9I	TTAA	1 cut(s)	1205
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	3 cut(s)	890, 906, 999
TseI	GCWGC	3 cut(s)	332, 410, 992
Tsp45I	GTSAC	3 cut(s)	890, 906, 999
TspDTI	ATGAA	4 cut(s)	588, 997, 1172, 1232
TspRI	CASTG	1 cut(s)	1024
Tth111I	GACNNNGTC	1 cut(s)	875
Van91I	CCANNNNNTGG	2 cut(s)	289, 833
VpaK11BI	GGWCC	2 cut(s)	424, 824
XapI	RAATTY	4 cut(s)	752, 778, 920, 1251
XceI	RCATGY	1 cut(s)	992
XmiI	GTMKAC	2 cut(s)	101, 1065
XspI	CTAG	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	648
Zsp2I	ATGCAT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.