Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Forward (+)

26286677 .. 26289462

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1215800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGCTCCCATTCTCTTCCACACAAACCACCCCCTCACCTCCCCCTCCAAATCTCTACCCTTCTTCCCACTCAATCTCTCACTCTCTCCCCTCACCTCCTTCCACTCTCAAGCTCCCCAAAAACCACACCCACCTCCATCCCCATCGCCTCCGAATCCGAGCCATGGATGCAGCTCAGCCCTTCGACTACGAAACCCAGATCAAAACCCATTACCAAAAATCCAACGCCCTCAAAATCGCCATTCTTGGCTTCGGAAACTTCGGTCAGTTCCTTGCCAAAGCCTTCGTCCGGCAAGGCCACACAGTCCTCGCACAATCTCGCTCCGACTACACCAAAGCAGCACAAAGCCTCGGGGTTTTGTTCTACACCGACCCCAATGATCTCTGCGAGCAACACCCAGAAGTTGTTATCTTGTGCACTTCGATTTTGTCCTCTGAAAAGGTAATCAGATCGTTCCCATTCCAGAGGCTTAGAAGAAACACTCTTTTTGTTGATGTTCTTTCGGTCAAGGAATTTCCGAGGGATTTGTTGTTGAAGTACTTGCCTGTTGAATTTGATATTCTGTGCACCCATCCAATGTTTGGACCAGAGAGTGGGAAGAACTCGTGGGCTAATCTTCCTTTTGTGTACGATAAAGTTCGGATTGGGAATAATGGCTTTAGGCTCAATAGGTGTGAGAAATTTCTAGGCATTTTTGCTAAGGAGGGGTGTAGGATGGTTGAAATGTCGTGTGCCGAACATGATAGGCATGCGGCAGGGTCACAATTTGTGACACACACAATGGGGAGGGTGTTGGAGAAGTTTAATTTGGAGTCTTCACCAATTAATACAAAAGGGTACGAGACATTGTTGAATTTGGTGGAGAATACATCCGGGGACAGCTTTGATTTGTATTACGGGTTGTTTATGTATAACAAGAATGCAATGGAGCAGTTGGAGAGATTGGACAATGCGTTTGAGGCTCTTAAGCAAGAGTTGTTTGGGAATTTGCACGAGGTTTGTAGGAAGCAGTTGTTTGGGACTGCAGAAGCAGCAGAAGCTCCAAGAGAAGAGCCTGCCCAGCCCCAGAAATTGCTTATGGTTGATGCTCAAAACGGACGTGATGAGACTCCTAAGAAAGGTCACGAAAATGGAACAAAGCAGCTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase PDH

Protein Analysis

384

Amino Acids

43.4

Weight (kDa)

8.1

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	78 - 167	1.6e-10	NADP oxidoreductase coenzyme F420-dependent
PDH_N	PF02153	92 - 199	1.2e-08	Prephenate dehydrogenase, nucleotide-binding domain
TYRAAT1_C	PF26213	264 - 337	1.2e-35	TYRAAT1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	581, 593
AciI	CCGC	1 cut(s)	752
AcsI	RAATTY	5 cut(s)	512, 551, 680, 853, 985
AfaI	GTAC	3 cut(s)	539, 629, 839
AfiI	CCNNNNNNNGG	5 cut(s)	163, 288, 581, 593, 1118
AflII	CTTAAG	1 cut(s)	965
AgsI	TTSAA	4 cut(s)	535, 551, 722, 853
AjiI	CACGTC	1 cut(s)	1100
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	5 cut(s)	112, 173, 882, 1040, 1144
AluI	AGCT	5 cut(s)	112, 173, 882, 1040, 1144
Alw21I	GWGCWC	2 cut(s)	419, 569
Alw26I	GTCTC	2 cut(s)	836, 1100
Alw44I	GTGCAC	2 cut(s)	415, 565
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	2 cut(s)	415, 565
ApeKI	GCWGC	5 cut(s)	170, 338, 1031, 1141, 1144
ApoI	RAATTY	5 cut(s)	512, 551, 680, 853, 985
ArsI	GACNNNNNNTTYG	4 cut(s)	270, 302, 938, 970
AseI	ATTAAT	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	874
AsuHPI	GGTGA	3 cut(s)	27, 84, 810
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	2 cut(s)	419, 569
BauI	CACGAG	2 cut(s)	604, 992
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	419, 569
BbvI	GCAGC	4 cut(s)	182, 350, 1043, 1131
BccI	CCATC	4 cut(s)	144, 150, 579, 709
BcnI	CCSGG	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	836, 1100
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	1023
BfrI	CTTAAG	1 cut(s)	965
BisI	GCNGC	6 cut(s)	171, 339, 753, 1032, 1142, 1145
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	6 cut(s)	172, 340, 754, 1033, 1143, 1146
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	874
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	1100
BmgT120I	GGNCC	1 cut(s)	584
BmrFI	CCNGG	1 cut(s)	874
BmsI	GCATC	2 cut(s)	157, 1075
BpiI	GAAGAC	1 cut(s)	807
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	874
BsaJI	CCNNGG	4 cut(s)	162, 349, 518, 873
Bsc4I	CCNNNNNNNGG	5 cut(s)	163, 288, 581, 593, 1118
Bse3DI	GCAATG	1 cut(s)	930
BseDI	CCNNGG	4 cut(s)	162, 349, 518, 873
BseGI	GGATG	5 cut(s)	136, 172, 571, 720, 869
BseLI	CCNNNNNNNGG	5 cut(s)	163, 288, 581, 593, 1118
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	2 cut(s)	419, 569
BseXI	GCAGC	4 cut(s)	182, 350, 1043, 1131
BseYI	CCCAGC	1 cut(s)	1059
BsgI	GTGCAG	1 cut(s)	1130
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	419, 569
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	289, 873
BslFI	GGGAC	2 cut(s)	890, 1033
BslI	CCNNNNNNNGG	5 cut(s)	163, 288, 581, 593, 1118
BsmAI	GTCTC	2 cut(s)	836, 1100
BsmFI	GGGAC	2 cut(s)	890, 1033
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	419, 569
Bsp143I	GATC	3 cut(s)	198, 379, 449
Bsp1720I	GCTNAGC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	1027
BspQI	GCTCTTC	1 cut(s)	1044
BspTI	CTTAAG	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	930
BssECI	CCNNGG	4 cut(s)	162, 349, 518, 873
BssMI	GATC	3 cut(s)	198, 379, 449
BssSI	CACGAG	2 cut(s)	604, 992
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	2 cut(s)	604, 992
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	19, 1044
BstAFI	CTTAAG	1 cut(s)	965
BstC8I	GCNNGC	3 cut(s)	389, 750, 1056
BstDEI	CTNAG	4 cut(s)	174, 470, 699, 1113
BstDSI	CCRYGG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	1116
BstF5I	GGATG	5 cut(s)	136, 172, 571, 720, 869
BstKTI	GATC	3 cut(s)	201, 382, 452
BstMAI	GTCTC	2 cut(s)	836, 1100
BstMBI	GATC	3 cut(s)	198, 379, 449
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 959, 1031, 1037, 1060
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	872
BstSFI	CTRYAG	1 cut(s)	1023
BstSLI	GKGCMC	2 cut(s)	419, 569
BstV1I	GCAGC	4 cut(s)	182, 350, 1043, 1131
BstV2I	GAAGAC	1 cut(s)	807
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	128
BtrI	CACGTC	1 cut(s)	1100
BtsCI	GGATG	5 cut(s)	136, 172, 571, 720, 869
Cac8I	GCNNGC	3 cut(s)	389, 750, 1056
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	3 cut(s)	538, 628, 838
CviAII	CATG	3 cut(s)	163, 740, 749
CviQI	GTAC	3 cut(s)	538, 628, 838
DdeI	CTNAG	4 cut(s)	174, 470, 699, 1113
DpnI	GATC	3 cut(s)	200, 381, 451
DpnII	GATC	3 cut(s)	198, 379, 449
Eam1104I	CTCTTC	2 cut(s)	19, 1044
EarI	CTCTTC	2 cut(s)	19, 1044
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	1116
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	166, 743, 752
FaiI	YATR	6 cut(s)	164, 741, 750, 908, 912, 1079
FaqI	GGGAC	2 cut(s)	890, 1033
FatI	CATG	3 cut(s)	162, 739, 748
Fnu4HI	GCNGC	6 cut(s)	171, 339, 753, 1032, 1142, 1145
FokI	GGATG	5 cut(s)	123, 179, 558, 727, 856
Fsp4HI	GCNGC	6 cut(s)	171, 339, 753, 1032, 1142, 1145
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	6 cut(s)	171, 339, 753, 1032, 1142, 1145
GsaI	CCCAGC	1 cut(s)	1063
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	2 cut(s)	289, 873
Hin1II	CATG	3 cut(s)	166, 743, 752
HinfI	GANTC	3 cut(s)	153, 812, 1108
HpaII	CCGG	2 cut(s)	289, 873
HphI	GGTGA	3 cut(s)	27, 84, 810
Hpy166II	GTNNAC	3 cut(s)	417, 567, 628
Hpy188I	TCNGA	8 cut(s)	152, 158, 254, 325, 436, 449, 519, 642
Hpy188III	TCNNGA	2 cut(s)	463, 1124
Hpy8I	GTNNAC	3 cut(s)	417, 567, 628
HpyAV	CCTTC	4 cut(s)	69, 108, 190, 292
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	1099
HpyCH4V	TGCA	7 cut(s)	170, 417, 567, 923, 991, 1025, 1147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 959, 1031, 1037, 1060
HpyF3I	CTNAG	4 cut(s)	174, 470, 699, 1113
HpySE526I	ACGT	1 cut(s)	1099
Hsp92II	CATG	3 cut(s)	166, 743, 752
Kzo9I	GATC	3 cut(s)	198, 379, 449
LguI	GCTCTTC	1 cut(s)	1044
LmnI	GCTCC	5 cut(s)	9, 117, 326, 928, 1045
Lsp1109I	GCAGC	4 cut(s)	182, 350, 1043, 1131
LweI	GCATC	2 cut(s)	157, 1075
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	1099
MaeIII	GTNAC	3 cut(s)	759, 769, 1121
MalI	GATC	3 cut(s)	200, 381, 451
MboI	GATC	3 cut(s)	198, 379, 449
MboII	GAAGA	7 cut(s)	6, 54, 486, 608, 610, 807, 1061
MhlI	GDGCHC	2 cut(s)	419, 569
MluCI	AATT	9 cut(s)	512, 551, 680, 764, 805, 822, 853, 985, 1070
MlyI	GAGTC	2 cut(s)	821, 1102
MmeI	TCCRAC	4 cut(s)	246, 348, 774, 915
MseI	TTAA	3 cut(s)	804, 825, 966
MslI	CAYNNNNRTG	1 cut(s)	1128
MspA1I	CMGCKG	1 cut(s)	1144
MspCI	CTTAAG	1 cut(s)	965
MspI	CCGG	2 cut(s)	289, 873
MspR9I	CCNGG	1 cut(s)	874
Mva1269I	GAATGC	1 cut(s)	925
MwoI	GCNNNNNNNGC	5 cut(s)	167, 959, 1031, 1037, 1060
NciI	CCSGG	1 cut(s)	874
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	198, 379, 449
NlaIII	CATG	3 cut(s)	166, 743, 752
NmuCI	GTSAC	3 cut(s)	759, 769, 1121
NspI	RCATGY	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	752
PciSI	GCTCTTC	1 cut(s)	1044
PctI	GAATGC	1 cut(s)	925
PfeI	GAWTC	1 cut(s)	153
PflMI	CCANNNNNTGG	2 cut(s)	581, 593
PkrI	GCNGC	6 cut(s)	172, 340, 754, 1033, 1143, 1146
PleI	GAGTC	2 cut(s)	820, 1102
PpsI	GAGTC	2 cut(s)	820, 1102
PshBI	ATTAAT	1 cut(s)	825
PspFI	CCCAGC	1 cut(s)	1059
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	1027
PvuII	CAGCTG	1 cut(s)	1144
RsaI	GTAC	3 cut(s)	539, 629, 839
RsaNI	GTAC	3 cut(s)	538, 628, 838
RseI	CAYNNNNRTG	1 cut(s)	1128
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	3 cut(s)	804, 825, 966
SatI	GCNGC	6 cut(s)	171, 339, 753, 1032, 1142, 1145
Sau3AI	GATC	3 cut(s)	198, 379, 449
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	2 cut(s)	821, 1102
ScrFI	CCNGG	1 cut(s)	874
SduI	GDGCHC	2 cut(s)	419, 569
SfaNI	GCATC	2 cut(s)	157, 1075
SfcI	CTRYAG	1 cut(s)	1023
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	1128
SmlI	CTYRAG	2 cut(s)	107, 965
SmoI	CTYRAG	2 cut(s)	107, 965
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	9 cut(s)	512, 551, 680, 764, 805, 822, 853, 985, 1070
SsiI	CCGC	1 cut(s)	752
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	872
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	1102
TaqI	TCGA	2 cut(s)	183, 422
TaqII	GACCGA	2 cut(s)	251, 493
TasI	AATT	9 cut(s)	512, 551, 680, 764, 805, 822, 853, 985, 1070
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	3 cut(s)	804, 825, 966
Tru9I	TTAA	3 cut(s)	804, 825, 966
TseFI	GTSAC	3 cut(s)	759, 769, 1121
TseI	GCWGC	5 cut(s)	170, 338, 1031, 1141, 1144
Tsp45I	GTSAC	3 cut(s)	759, 769, 1121
TspGWI	ACGGA	1 cut(s)	1110
Van91I	CCANNNNNTGG	2 cut(s)	581, 593
Vha464I	CTTAAG	1 cut(s)	965
VneI	GTGCAC	2 cut(s)	415, 565
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	825
XagI	CCTNNNNNAGG	1 cut(s)	1116
XapI	RAATTY	5 cut(s)	512, 551, 680, 853, 985
XceI	RCATGY	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.